CsaV3_1G006330 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G006330
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 4038986 .. 4039151 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTATGGGAATCTTTAAAGGGTGAAGAAGAGAGTGGAGACGGCAGTGGCCGTGGGGGGAGGAAACTGACGATGGCGGCGGAGATGGTGGAGGAATGGAAGGAGATGATAGTAGCATTGTGTGTATCATCAGCCATGGGGATAGCAACAGTGTCTGTTCAAATATAA

mRNA sequence

TTATGGGAATCTTTAAAGGGTGAAGAAGAGAGTGGAGACGGCAGTGGCCGTGGGGGGAGGAAACTGACGATGGCGGCGGAGATGGTGGAGGAATGGAAGGAGATGATAGTAGCATTGTGTGTATCATCAGCCATGGGGATAGCAACAGTGTCTGTTCAAATATA

Coding sequence (CDS)

TTATGGGAATCTTTAAAGGGTGAAGAAGAGAGTGGAGACGGCAGTGGCCGTGGGGGGAGGAAACTGACGATGGCGGCGGAGATGGTGGAGGAATGGAAGGAGATGATAGTAGCATTGTGTGTATCATCAGCCATGGGGATAGCAACAGTGTCTGTTCAAATATA

Protein sequence

LWESLKGEEESGDGSGRGGRKLTMAAEMVEEWKEMIVALCVSSAMGIATVSVQIX
Homology
[Close]
BLAST of CsaV3_1G006330 vs. NCBI nr
Match: KGN64090.1 (hypothetical protein Csa_1G041520 [Cucumis sativus])

HSP 1 Score: 96.3 bits (238), Expect = 3.5e-17
Identity = 49/54 (90.74%), Postives = 50/54 (92.59%), Query Frame = 0 

Query: 1  LWESLKGEEESGDGSGRGGRKLTMAAEMVEEWKEMIVALCVSSAMGIATVSVQI 55
          LWESLKGEEESGD  G GGRKLTM AEMVEEWKEMIVALCVSSA+GIATVSVQI
Sbjct: 16 LWESLKGEEESGDSGGHGGRKLTMVAEMVEEWKEMIVALCVSSAIGIATVSVQI 69

[Close]
BLAST of CsaV3_1G006330 vs. NCBI nr
Match: KGN64089.1 (hypothetical protein Csa_1G040520 [Cucumis sativus])

HSP 1 Score: 51.6 bits (122), Expect = 9.8e-04
Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 0 

Query: 20 RKLTMAAEMVEEWKEMIVALCVSSAMGIATVSVQI 55
          R   +AAEMVEEWK+MI+  CVSSA+GIATVSV I
Sbjct: 21 RSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHI 55

[Close]
BLAST of CsaV3_1G006330 vs. TrEMBL
Match: tr|A0A0A0LQB6|A0A0A0LQB6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G041520 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.3e-17
Identity = 49/54 (90.74%), Postives = 50/54 (92.59%), Query Frame = 0 

Query: 1  LWESLKGEEESGDGSGRGGRKLTMAAEMVEEWKEMIVALCVSSAMGIATVSVQI 55
          LWESLKGEEESGD  G GGRKLTM AEMVEEWKEMIVALCVSSA+GIATVSVQI
Sbjct: 16 LWESLKGEEESGDSGGHGGRKLTMVAEMVEEWKEMIVALCVSSAIGIATVSVQI 69

[Close]
BLAST of CsaV3_1G006330 vs. TrEMBL
Match: tr|A0A0A0LSX4|A0A0A0LSX4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040520 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 6.5e-04
Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 0 

Query: 20 RKLTMAAEMVEEWKEMIVALCVSSAMGIATVSVQI 55
          R   +AAEMVEEWK+MI+  CVSSA+GIATVSV I
Sbjct: 21 RSFEVAAEMVEEWKDMIIGFCVSSAIGIATVSVHI 55

The following BLAST results are available for this feature:
BLAST of CsaV3_1G006330 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64090.13.5e-1790.74hypothetical protein Csa_1G041520 [Cucumis sativus][more]
KGN64089.19.8e-0471.43hypothetical protein Csa_1G040520 [Cucumis sativus][more]
BLAST of CsaV3_1G006330 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G006330 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G006330 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LQB6|A0A0A0LQB6_CUCSA2.3e-1790.74Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G041520 PE=4 SV=1[more]
tr|A0A0A0LSX4|A0A0A0LSX4_CUCSA6.5e-0471.43Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040520 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G006330.1CsaV3_1G006330.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..16
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G006330Watermelon (97103) v1cucwmB043
CsaV3_1G006330Watermelon (97103) v1cucwmB070
CsaV3_1G006330Watermelon (97103) v1cucwmB107
CsaV3_1G006330Watermelon (97103) v2cucwmbB054
CsaV3_1G006330Watermelon (97103) v2cucwmbB058
CsaV3_1G006330Watermelon (97103) v2cucwmbB078
CsaV3_1G006330Wax gourdcucwgoB052
CsaV3_1G006330Wax gourdcucwgoB077
CsaV3_1G006330Wax gourdcucwgoB117
CsaV3_1G006330Cucumber (Chinese Long) v3cuccucB000
CsaV3_1G006330Cucumber (Chinese Long) v3cuccucB004
CsaV3_1G006330Cucumber (Chinese Long) v3cuccucB034
CsaV3_1G006330Silver-seed gourdcarcucB0418
CsaV3_1G006330Silver-seed gourdcarcucB0495
CsaV3_1G006330Silver-seed gourdcarcucB0545
CsaV3_1G006330Silver-seed gourdcarcucB0548
CsaV3_1G006330Silver-seed gourdcarcucB0630
CsaV3_1G006330Cucumber (Gy14) v2cgybcucB002
CsaV3_1G006330Cucumber (Gy14) v2cgybcucB004
CsaV3_1G006330Cucumber (Gy14) v2cgybcucB012
CsaV3_1G006330Cucumber (Gy14) v2cgybcucB200
CsaV3_1G006330Cucumber (Gy14) v1cgycucB143
CsaV3_1G006330Cucumber (Gy14) v1cgycucB315
CsaV3_1G006330Cucumber (Gy14) v1cgycucB317
CsaV3_1G006330Cucumber (Gy14) v1cgycucB434
CsaV3_1G006330Cucurbita maxima (Rimu)cmacucB0076
CsaV3_1G006330Cucurbita maxima (Rimu)cmacucB0102
CsaV3_1G006330Cucurbita maxima (Rimu)cmacucB0248
CsaV3_1G006330Cucurbita maxima (Rimu)cmacucB0464
CsaV3_1G006330Cucurbita maxima (Rimu)cmacucB0483
CsaV3_1G006330Cucurbita maxima (Rimu)cmacucB0816
CsaV3_1G006330Cucurbita moschata (Rifu)cmocucB0063
CsaV3_1G006330Cucurbita moschata (Rifu)cmocucB0092
CsaV3_1G006330Cucurbita moschata (Rifu)cmocucB0234
CsaV3_1G006330Cucurbita moschata (Rifu)cmocucB0457
CsaV3_1G006330Cucurbita moschata (Rifu)cmocucB0466
CsaV3_1G006330Cucurbita moschata (Rifu)cmocucB0471
CsaV3_1G006330Cucurbita pepo (Zucchini)cpecucB0020
CsaV3_1G006330Cucurbita pepo (Zucchini)cpecucB0028
CsaV3_1G006330Cucurbita pepo (Zucchini)cpecucB0031
CsaV3_1G006330Cucurbita pepo (Zucchini)cpecucB0436
CsaV3_1G006330Cucurbita pepo (Zucchini)cpecucB0472
CsaV3_1G006330Cucurbita pepo (Zucchini)cpecucB0623
CsaV3_1G006330Cucurbita pepo (Zucchini)cpecucB0816
CsaV3_1G006330Wild cucumber (PI 183967)cpicucB001
CsaV3_1G006330Wild cucumber (PI 183967)cpicucB004
CsaV3_1G006330Wild cucumber (PI 183967)cpicucB253
CsaV3_1G006330Bottle gourd (USVL1VR-Ls)cuclsiB022
CsaV3_1G006330Bottle gourd (USVL1VR-Ls)cuclsiB063
CsaV3_1G006330Bottle gourd (USVL1VR-Ls)cuclsiB083
CsaV3_1G006330Melon (DHL92) v3.5.1cucmeB004
CsaV3_1G006330Melon (DHL92) v3.5.1cucmeB024
CsaV3_1G006330Melon (DHL92) v3.5.1cucmeB056
CsaV3_1G006330Melon (DHL92) v3.6.1cucmedB004
CsaV3_1G006330Melon (DHL92) v3.6.1cucmedB022
CsaV3_1G006330Melon (DHL92) v3.6.1cucmedB053
CsaV3_1G006330Watermelon (Charleston Gray)cucwcgB063
CsaV3_1G006330Watermelon (Charleston Gray)cucwcgB069
CsaV3_1G006330Watermelon (Charleston Gray)cucwcgB090