CsaV3_1G006300 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G006300
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 4016668 .. 4017290 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCTCCAAGGCTTCGTCTCTTCTTTCTCTTCGCTTTCGTTTTACTACGAGGTAATCAAACAACAACATCAGTTTTTATAAATGTATGTGTCGACGTCTTTTGTGATGTAAGTTTGTTGTTGTTGATTACTTTTGTTAAATCATTACGGATATATCTCAAATACTCGAGTTTGTGAGTTTCTCACTCAGTTATATCGAACCAACTTGAAAATTTGTAGAAGGAATTTAAGAAGTAAAAGTGTATGTATGATAGCTTTTTGCTCAGCTTAAAATTTATGTAACTGTAGGTGGAGTTGCTGATGGAAGAAGCTATCCGGTTTCAACTCAAGTATTGGGTAAAGAAACGCAAGAAGATGTAATGAAAAAGATGGAAAGAATAAGAGTGAAAGAGCAAGATGGTTGTCGTTCTTCTCCAAGTACAACTGACTCGTCTGATAATCTTTATCAAAACAAGAAGAGAATTTTGAATGTAAAGTACAAATGGATTAACAAAAGAGATAAAAGTGAAGGTGGACATCTACTTAACGATGAAGGTTCGAGATTTATAGCTTATAATGCCGATTATTTTGTTGCTAAACCTCATCCTCCAAAGAATAATGGAGGAGGGAAATATCTCTAA

mRNA sequence

ATGGCTTCTCCAAGGCTTCGTCTCTTCTTTCTCTTCGCTTTCGTTTTACTACGAGGTGGAGTTGCTGATGGAAGAAGCTATCCGGTTTCAACTCAAGTATTGGGTAAAGAAACGCAAGAAGATGTAATGAAAAAGATGGAAAGAATAAGAGTGAAAGAGCAAGATGGTTGTCGTTCTTCTCCAAGTACAACTGACTCGTCTGATAATCTTTATCAAAACAAGAAGAGAATTTTGAATGTAAAGTACAAATGGATTAACAAAAGAGATAAAAGTGAAGGTGGACATCTACTTAACGATGAAGGTTCGAGATTTATAGCTTATAATGCCGATTATTTTGTTGCTAAACCTCATCCTCCAAAGAATAATGGAGGAGGGAAATATCTCTAA

Coding sequence (CDS)

ATGGCTTCTCCAAGGCTTCGTCTCTTCTTTCTCTTCGCTTTCGTTTTACTACGAGGTGGAGTTGCTGATGGAAGAAGCTATCCGGTTTCAACTCAAGTATTGGGTAAAGAAACGCAAGAAGATGTAATGAAAAAGATGGAAAGAATAAGAGTGAAAGAGCAAGATGGTTGTCGTTCTTCTCCAAGTACAACTGACTCGTCTGATAATCTTTATCAAAACAAGAAGAGAATTTTGAATGTAAAGTACAAATGGATTAACAAAAGAGATAAAAGTGAAGGTGGACATCTACTTAACGATGAAGGTTCGAGATTTATAGCTTATAATGCCGATTATTTTGTTGCTAAACCTCATCCTCCAAAGAATAATGGAGGAGGGAAATATCTCTAA

Protein sequence

MASPRLRLFFLFAFVLLRGGVADGRSYPVSTQVLGKETQEDVMKKMERIRVKEQDGCRSSPSTTDSSDNLYQNKKRILNVKYKWINKRDKSEGGHLLNDEGSRFIAYNADYFVAKPHPPKNNGGGKYL
Homology
[Close]
BLAST of CsaV3_1G006300 vs. NCBI nr
Match: KGN64086.1 (hypothetical protein Csa_1G040000 [Cucumis sativus])

HSP 1 Score: 262.7 bits (670), Expect = 6.6e-67
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0 

Query: 1   MASPRLRLFFLFAFVLLRGGVADGRSYPVSTQVLGKETQEDVMKKMERIRVKEQDGCRSS 60
           MASPRLRLFFLFAFVLLRGGVADGRSYPVSTQVLGKETQEDVMKKMERIRVKEQDGCRSS
Sbjct: 1   MASPRLRLFFLFAFVLLRGGVADGRSYPVSTQVLGKETQEDVMKKMERIRVKEQDGCRSS 60

Query: 61  PSTTDSSDNLYQNKKRILNVKYKWINKRDKSEGGHLLNDEGSRFIAYNADYFVAKPHPPK 120
           PSTTDSSDNLYQNKKRILNVKYKWINKRDKSEGGHLLNDEGSRFIAYNADYFVAKPHPPK
Sbjct: 61  PSTTDSSDNLYQNKKRILNVKYKWINKRDKSEGGHLLNDEGSRFIAYNADYFVAKPHPPK 120

Query: 121 NNGGGKYL 129
           NNGGGKYL
Sbjct: 121 NNGGGKYL 128

[Close]
BLAST of CsaV3_1G006300 vs. NCBI nr
Match: XP_022137288.1 (uncharacterized protein LOC111008786 [Momordica charantia])

HSP 1 Score: 90.1 bits (222), Expect = 5.9e-15
Identity = 58/133 (43.61%), Postives = 77/133 (57.89%), Query Frame = 0 

Query: 1   MASPRLRLFFLFAFVLLR-----GGVADGRSYPVSTQVLGKETQEDVMKKM---ERIRVK 60
           MAS R  + FL AF  L      G +A GR+YP     +G E Q + ++KM   E +R  
Sbjct: 1   MASTRRLVIFLLAFFSLHLNDQGGIIAYGRNYPFPMSRVGSEKQRESVRKMMGKEDLRRV 60

Query: 61  EQDGCRSSPSTTDSSDNLYQNKK-RILNVKYKWINKRDKSEGGHLLNDEGSRFIAYNADY 120
           +++G   S ST+ S+ NL   K     + K K I+KRD +   H L+ E S F+ +NADY
Sbjct: 61  KEEGHHFSGSTSISNGNLNPRKNAENWSAKPKLISKRDYNLNQHPLDVEASSFVTFNADY 120

Query: 121 FVAKPHPPKNNGG 125
           FVAKPHPPKNNGG
Sbjct: 121 FVAKPHPPKNNGG 133

[Close]
BLAST of CsaV3_1G006300 vs. TrEMBL
Match: tr|A0A0A0LVN9|A0A0A0LVN9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040000 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 4.4e-67
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0 

Query: 1   MASPRLRLFFLFAFVLLRGGVADGRSYPVSTQVLGKETQEDVMKKMERIRVKEQDGCRSS 60
           MASPRLRLFFLFAFVLLRGGVADGRSYPVSTQVLGKETQEDVMKKMERIRVKEQDGCRSS
Sbjct: 1   MASPRLRLFFLFAFVLLRGGVADGRSYPVSTQVLGKETQEDVMKKMERIRVKEQDGCRSS 60

Query: 61  PSTTDSSDNLYQNKKRILNVKYKWINKRDKSEGGHLLNDEGSRFIAYNADYFVAKPHPPK 120
           PSTTDSSDNLYQNKKRILNVKYKWINKRDKSEGGHLLNDEGSRFIAYNADYFVAKPHPPK
Sbjct: 61  PSTTDSSDNLYQNKKRILNVKYKWINKRDKSEGGHLLNDEGSRFIAYNADYFVAKPHPPK 120

Query: 121 NNGGGKYL 129
           NNGGGKYL
Sbjct: 121 NNGGGKYL 128

The following BLAST results are available for this feature:
BLAST of CsaV3_1G006300 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64086.16.6e-67100.00hypothetical protein Csa_1G040000 [Cucumis sativus][more]
XP_022137288.15.9e-1543.61uncharacterized protein LOC111008786 [Momordica charantia][more]
BLAST of CsaV3_1G006300 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G006300 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G006300 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LVN9|A0A0A0LVN9_CUCSA4.4e-67100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G040000 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G006300.1CsaV3_1G006300.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G006300CSPI01G06460Wild cucumber (PI 183967)cpicucB001
CsaV3_1G006300ClCG04G011510Watermelon (Charleston Gray)cucwcgB063
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G006300Cucumber (Chinese Long) v3cuccucB000
CsaV3_1G006300Cucumber (Chinese Long) v3cuccucB004
CsaV3_1G006300Cucumber (Chinese Long) v3cuccucB031
CsaV3_1G006300Cucumber (Chinese Long) v3cuccucB034
CsaV3_1G006300Silver-seed gourdcarcucB0418
CsaV3_1G006300Silver-seed gourdcarcucB0495
CsaV3_1G006300Silver-seed gourdcarcucB0545
CsaV3_1G006300Silver-seed gourdcarcucB0548
CsaV3_1G006300Silver-seed gourdcarcucB0630
CsaV3_1G006300Cucumber (Gy14) v2cgybcucB002
CsaV3_1G006300Cucumber (Gy14) v2cgybcucB004
CsaV3_1G006300Cucumber (Gy14) v2cgybcucB012
CsaV3_1G006300Cucumber (Gy14) v2cgybcucB164
CsaV3_1G006300Cucumber (Gy14) v2cgybcucB200
CsaV3_1G006300Cucumber (Gy14) v1cgycucB143
CsaV3_1G006300Cucumber (Gy14) v1cgycucB315
CsaV3_1G006300Cucumber (Gy14) v1cgycucB317
CsaV3_1G006300Cucumber (Gy14) v1cgycucB434
CsaV3_1G006300Cucurbita maxima (Rimu)cmacucB0076
CsaV3_1G006300Cucurbita maxima (Rimu)cmacucB0102
CsaV3_1G006300Cucurbita maxima (Rimu)cmacucB0248
CsaV3_1G006300Cucurbita maxima (Rimu)cmacucB0464
CsaV3_1G006300Cucurbita maxima (Rimu)cmacucB0483
CsaV3_1G006300Cucurbita maxima (Rimu)cmacucB0516
CsaV3_1G006300Cucurbita maxima (Rimu)cmacucB0816
CsaV3_1G006300Cucurbita moschata (Rifu)cmocucB0063
CsaV3_1G006300Cucurbita moschata (Rifu)cmocucB0092
CsaV3_1G006300Cucurbita moschata (Rifu)cmocucB0234
CsaV3_1G006300Cucurbita moschata (Rifu)cmocucB0457
CsaV3_1G006300Cucurbita moschata (Rifu)cmocucB0466
CsaV3_1G006300Cucurbita moschata (Rifu)cmocucB0471
CsaV3_1G006300Cucurbita pepo (Zucchini)cpecucB0020
CsaV3_1G006300Cucurbita pepo (Zucchini)cpecucB0028
CsaV3_1G006300Cucurbita pepo (Zucchini)cpecucB0031
CsaV3_1G006300Cucurbita pepo (Zucchini)cpecucB0436
CsaV3_1G006300Cucurbita pepo (Zucchini)cpecucB0472
CsaV3_1G006300Cucurbita pepo (Zucchini)cpecucB0623
CsaV3_1G006300Cucurbita pepo (Zucchini)cpecucB0742
CsaV3_1G006300Cucurbita pepo (Zucchini)cpecucB0816
CsaV3_1G006300Wild cucumber (PI 183967)cpicucB004
CsaV3_1G006300Wild cucumber (PI 183967)cpicucB203
CsaV3_1G006300Wild cucumber (PI 183967)cpicucB253
CsaV3_1G006300Bottle gourd (USVL1VR-Ls)cuclsiB022
CsaV3_1G006300Bottle gourd (USVL1VR-Ls)cuclsiB083
CsaV3_1G006300Bottle gourd (USVL1VR-Ls)cuclsiB091
CsaV3_1G006300Melon (DHL92) v3.5.1cucmeB001
CsaV3_1G006300Melon (DHL92) v3.5.1cucmeB004
CsaV3_1G006300Melon (DHL92) v3.5.1cucmeB024
CsaV3_1G006300Melon (DHL92) v3.5.1cucmeB056
CsaV3_1G006300Melon (DHL92) v3.5.1cucmeB085
CsaV3_1G006300Melon (DHL92) v3.6.1cucmedB004
CsaV3_1G006300Melon (DHL92) v3.6.1cucmedB022
CsaV3_1G006300Melon (DHL92) v3.6.1cucmedB053
CsaV3_1G006300Melon (DHL92) v3.6.1cucmedB080
CsaV3_1G006300Watermelon (Charleston Gray)cucwcgB069
CsaV3_1G006300Watermelon (Charleston Gray)cucwcgB090
CsaV3_1G006300Watermelon (Charleston Gray)cucwcgB097
CsaV3_1G006300Watermelon (97103) v1cucwmB043
CsaV3_1G006300Watermelon (97103) v1cucwmB070
CsaV3_1G006300Watermelon (97103) v1cucwmB107
CsaV3_1G006300Watermelon (97103) v2cucwmbB054
CsaV3_1G006300Watermelon (97103) v2cucwmbB058
CsaV3_1G006300Watermelon (97103) v2cucwmbB078
CsaV3_1G006300Watermelon (97103) v2cucwmbB085
CsaV3_1G006300Wax gourdcucwgoB052
CsaV3_1G006300Wax gourdcucwgoB117