CsaV3_1G006030 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G006030
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 3869418 .. 3869741 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAGAATCCACGTGGTGATCAGTGGTGAGGGGTTCACATCGTGTACGGTTAGAGAGAAACGGAGGTTCTGGGTGAGTGTGGGTTTCAAGTTGCAGGTGGAGGCTCCAATCAGCCACTCCCACCACCTGCAAGTAGCCGTAATACTCGCCCCCCTTCTCCAATTTCTGGCAGGTGTTGCTGTTGTTATTGCTGTTAGTGTGAGTGTTTCTCTTTGTAATTTTCTTCAAAATTTCGTCTCAATTTCTTATTCAACTTTCCTTTCCCAACTTCTTTGCTTTGCTTTTTGTTATTACCCACGCACACTCCCTTCCCCCACCTAA

mRNA sequence

ATGGGAAGAATCCACGTGGTGATCAGTGGTGAGGGGTTCACATCGTGTACGGTTAGAGAGAAACGGAGGTTCTGGGTGAGTGTGGGTTTCAAGTTGCAGGTGGAGGCTCCAATCAGCCACTCCCACCACCTGCAAGTAGCCGTAATACTCGCCCCCCTTCTCCAATTTCTGGCAGGTGTTGCTGTTGTTATTGCTGTTAGTGTGAGTGTTTCTCTTTGTAATTTTCTTCAAAATTTCGTCTCAATTTCTTATTCAACTTTCCTTTCCCAACTTCTTTGCTTTGCTTTTTGTTATTACCCACGCACACTCCCTTCCCCCACCTAA

Coding sequence (CDS)

ATGGGAAGAATCCACGTGGTGATCAGTGGTGAGGGGTTCACATCGTGTACGGTTAGAGAGAAACGGAGGTTCTGGGTGAGTGTGGGTTTCAAGTTGCAGGTGGAGGCTCCAATCAGCCACTCCCACCACCTGCAAGTAGCCGTAATACTCGCCCCCCTTCTCCAATTTCTGGCAGGTGTTGCTGTTGTTATTGCTGTTAGTGTGAGTGTTTCTCTTTGTAATTTTCTTCAAAATTTCGTCTCAATTTCTTATTCAACTTTCCTTTCCCAACTTCTTTGCTTTGCTTTTTGTTATTACCCACGCACACTCCCTTCCCCCACCTAA

Protein sequence

MGRIHVVISGEGFTSCTVREKRRFWVSVGFKLQVEAPISHSHHLQVAVILAPLLQFLAGVAVVIAVSVSVSLCNFLQNFVSISYSTFLSQLLCFAFCYYPRTLPSPT
Homology
[Close]
BLAST of CsaV3_1G006030 vs. NCBI nr
Match: KGN64058.1 (hypothetical protein Csa_1G039235 [Cucumis sativus])

HSP 1 Score: 157.9 bits (398), Expect = 1.9e-35
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0 

Query: 1   MGRIHVVISGEGFTSCTVREKRRFWVSVGFKLQVEAPISHSHHLQVAVILAPLLQFLAGV 60
           MGRIHVVISGEGFTSCTVREKRRFWVSVGFKLQVEAPISHSHHLQVAVILAPLLQFLAGV
Sbjct: 1   MGRIHVVISGEGFTSCTVREKRRFWVSVGFKLQVEAPISHSHHLQVAVILAPLLQFLAGV 60

Query: 61  AVXXXXXXXXXXXXXXXXXXXXXXXXXXSQLLCFAFCYYPRTLPSPT 108
           AVXXXXXXXXXXXXXXXXXXXXXXXXXXSQLLCFAFCYYPRTLPSPT
Sbjct: 61  AVXXXXXXXXXXXXXXXXXXXXXXXXXXSQLLCFAFCYYPRTLPSPT 107

[Close]
BLAST of CsaV3_1G006030 vs. TrEMBL
Match: tr|A0A0A0LQM3|A0A0A0LQM3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G039235 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.3e-35
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0 

Query: 1   MGRIHVVISGEGFTSCTVREKRRFWVSVGFKLQVEAPISHSHHLQVAVILAPLLQFLAGV 60
           MGRIHVVISGEGFTSCTVREKRRFWVSVGFKLQVEAPISHSHHLQVAVILAPLLQFLAGV
Sbjct: 1   MGRIHVVISGEGFTSCTVREKRRFWVSVGFKLQVEAPISHSHHLQVAVILAPLLQFLAGV 60

Query: 61  AVXXXXXXXXXXXXXXXXXXXXXXXXXXSQLLCFAFCYYPRTLPSPT 108
           AVXXXXXXXXXXXXXXXXXXXXXXXXXXSQLLCFAFCYYPRTLPSPT
Sbjct: 61  AVXXXXXXXXXXXXXXXXXXXXXXXXXXSQLLCFAFCYYPRTLPSPT 107

The following BLAST results are available for this feature:
BLAST of CsaV3_1G006030 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN64058.11.9e-35100.00hypothetical protein Csa_1G039235 [Cucumis sativus][more]
BLAST of CsaV3_1G006030 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G006030 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G006030 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LQM3|A0A0A0LQM3_CUCSA1.3e-35100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G039235 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G006030.1CsaV3_1G006030.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G006030Cucumber (Chinese Long) v3cuccucB000
CsaV3_1G006030Cucumber (Chinese Long) v3cuccucB034
CsaV3_1G006030Cucumber (Chinese Long) v3cuccucB037
CsaV3_1G006030Cucumber (Chinese Long) v3cuccucB047
CsaV3_1G006030Silver-seed gourdcarcucB0115
CsaV3_1G006030Silver-seed gourdcarcucB0272
CsaV3_1G006030Silver-seed gourdcarcucB0418
CsaV3_1G006030Silver-seed gourdcarcucB0546
CsaV3_1G006030Silver-seed gourdcarcucB0630
CsaV3_1G006030Cucumber (Gy14) v2cgybcucB002
CsaV3_1G006030Cucumber (Gy14) v2cgybcucB004
CsaV3_1G006030Cucumber (Gy14) v2cgybcucB203
CsaV3_1G006030Cucumber (Gy14) v2cgybcucB200
CsaV3_1G006030Cucumber (Gy14) v2cgybcucB250
CsaV3_1G006030Cucumber (Gy14) v1cgycucB143
CsaV3_1G006030Cucumber (Gy14) v1cgycucB241
CsaV3_1G006030Cucumber (Gy14) v1cgycucB315
CsaV3_1G006030Cucumber (Gy14) v1cgycucB434
CsaV3_1G006030Cucumber (Gy14) v1cgycucB507
CsaV3_1G006030Cucurbita maxima (Rimu)cmacucB0076
CsaV3_1G006030Cucurbita maxima (Rimu)cmacucB0102
CsaV3_1G006030Cucurbita maxima (Rimu)cmacucB0185
CsaV3_1G006030Cucurbita maxima (Rimu)cmacucB0248
CsaV3_1G006030Cucurbita maxima (Rimu)cmacucB0324
CsaV3_1G006030Cucurbita maxima (Rimu)cmacucB0479
CsaV3_1G006030Cucurbita maxima (Rimu)cmacucB0815
CsaV3_1G006030Cucurbita maxima (Rimu)cmacucB0816
CsaV3_1G006030Cucurbita moschata (Rifu)cmocucB0063
CsaV3_1G006030Cucurbita moschata (Rifu)cmocucB0092
CsaV3_1G006030Cucurbita moschata (Rifu)cmocucB0170
CsaV3_1G006030Cucurbita moschata (Rifu)cmocucB0234
CsaV3_1G006030Cucurbita moschata (Rifu)cmocucB0466
CsaV3_1G006030Cucurbita moschata (Rifu)cmocucB0799
CsaV3_1G006030Cucurbita moschata (Rifu)cmocucB0800
CsaV3_1G006030Cucurbita pepo (Zucchini)cpecucB0020
CsaV3_1G006030Cucurbita pepo (Zucchini)cpecucB0030
CsaV3_1G006030Cucurbita pepo (Zucchini)cpecucB0436
CsaV3_1G006030Cucurbita pepo (Zucchini)cpecucB0471
CsaV3_1G006030Cucurbita pepo (Zucchini)cpecucB0472
CsaV3_1G006030Cucurbita pepo (Zucchini)cpecucB0623
CsaV3_1G006030Cucurbita pepo (Zucchini)cpecucB0816
CsaV3_1G006030Wild cucumber (PI 183967)cpicucB001
CsaV3_1G006030Wild cucumber (PI 183967)cpicucB003
CsaV3_1G006030Wild cucumber (PI 183967)cpicucB253
CsaV3_1G006030Wild cucumber (PI 183967)cpicucB256
CsaV3_1G006030Wild cucumber (PI 183967)cpicucB311
CsaV3_1G006030Bottle gourd (USVL1VR-Ls)cuclsiB022
CsaV3_1G006030Bottle gourd (USVL1VR-Ls)cuclsiB059
CsaV3_1G006030Bottle gourd (USVL1VR-Ls)cuclsiB083
CsaV3_1G006030Bottle gourd (USVL1VR-Ls)cuclsiB093
CsaV3_1G006030Melon (DHL92) v3.5.1cucmeB001
CsaV3_1G006030Melon (DHL92) v3.5.1cucmeB004
CsaV3_1G006030Melon (DHL92) v3.5.1cucmeB024
CsaV3_1G006030Melon (DHL92) v3.5.1cucmeB056
CsaV3_1G006030Melon (DHL92) v3.5.1cucmeB062
CsaV3_1G006030Melon (DHL92) v3.6.1cucmedB001
CsaV3_1G006030Melon (DHL92) v3.6.1cucmedB004
CsaV3_1G006030Melon (DHL92) v3.6.1cucmedB022
CsaV3_1G006030Melon (DHL92) v3.6.1cucmedB053
CsaV3_1G006030Melon (DHL92) v3.6.1cucmedB059
CsaV3_1G006030Watermelon (Charleston Gray)cucwcgB063
CsaV3_1G006030Watermelon (Charleston Gray)cucwcgB069
CsaV3_1G006030Watermelon (Charleston Gray)cucwcgB090
CsaV3_1G006030Watermelon (Charleston Gray)cucwcgB099
CsaV3_1G006030Watermelon (97103) v1cucwmB011
CsaV3_1G006030Watermelon (97103) v1cucwmB043
CsaV3_1G006030Watermelon (97103) v1cucwmB070
CsaV3_1G006030Watermelon (97103) v1cucwmB107
CsaV3_1G006030Watermelon (97103) v2cucwmbB054
CsaV3_1G006030Watermelon (97103) v2cucwmbB058
CsaV3_1G006030Watermelon (97103) v2cucwmbB078
CsaV3_1G006030Wax gourdcucwgoB008
CsaV3_1G006030Wax gourdcucwgoB052
CsaV3_1G006030Wax gourdcucwgoB074
CsaV3_1G006030Wax gourdcucwgoB117