CsaV3_1G004930 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G004930
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Descriptionrho GDP-dissociation inhibitor 1-like
Locationchr1 : 3246329 .. 3246697 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGTTGGGAAGCAGTTGAGGAGGAAGCAGTGTCTGTCTGCCAGAAAAGTCGATGAGTTCTGGCAGGAAAAGAAGAGTGAGGAATTAGAGGTTGATGATAAAGATGGGTTCACTCTAGGGCCTCTCCTTTCACTCAAGGAACAACTTGATAAGGACAAGGATGGTGAAAGCCTGAGAAGGTGGAAAGAAAAGTTGCTTGGTTGCTTAGAAAGAGTGAACAAAGGGAACCTGAAGTCAAGTTTCATTCCATTGGAATTATTTCTGATGAATTTGTGGAAGTCAATACTCCATTGCCTGTACAGGAAAATCAAAGTGGTCATGTTCTATTTACTCGTCAAGAGGGATCTTGATATCAACTTTGGTTGA

mRNA sequence

ATGGAGGTTGGGAAGCAGTTGAGGAGGAAGCAGTGTCTGTCTGCCAGAAAAGTCGATGAGTTCTGGCAGGAAAAGAAGAGTGAGGAATTAGAGGTTGATGATAAAGATGGGTTCACTCTAGGGCCTCTCCTTTCACTCAAGGAACAACTTGATAAGGACAAGGATGGTGAAAGCCTGAGAAGGTGGAAAGAAAAGTTGCTTGGTTGCTTAGAAAGAGTGAACAAAGGGAACCTGAAGTCAAGTTTCATTCCATTGGAATTATTTCTGATGAATTTGTGGAAGTCAATACTCCATTGCCTGTACAGGAAAATCAAAGTGGTCATGTTCTATTTACTCGTCAAGAGGGATCTTGATATCAACTTTGGTTGA

Coding sequence (CDS)

ATGGAGGTTGGGAAGCAGTTGAGGAGGAAGCAGTGTCTGTCTGCCAGAAAAGTCGATGAGTTCTGGCAGGAAAAGAAGAGTGAGGAATTAGAGGTTGATGATAAAGATGGGTTCACTCTAGGGCCTCTCCTTTCACTCAAGGAACAACTTGATAAGGACAAGGATGGTGAAAGCCTGAGAAGGTGGAAAGAAAAGTTGCTTGGTTGCTTAGAAAGAGTGAACAAAGGGAACCTGAAGTCAAGTTTCATTCCATTGGAATTATTTCTGATGAATTTGTGGAAGTCAATACTCCATTGCCTGTACAGGAAAATCAAAGTGGTCATGTTCTATTTACTCGTCAAGAGGGATCTTGATATCAACTTTGGTTGA

Protein sequence

MEVGKQLRRKQCLSARKVDEFWQEKKSEELEVDDKDGFTLGPLLSLKEQLDKDKDGESLRRWKEKLLGCLERVNKGNLKSSFIPLELFLMNLWKSILHCLYRKIKVVMFYLLVKRDLDINFG
Homology
[Close]
BLAST of CsaV3_1G004930 vs. NCBI nr
Match: KGN63942.1 (hypothetical protein Csa_1G030680 [Cucumis sativus])

HSP 1 Score: 240.4 bits (612), Expect = 3.3e-60
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0 

Query: 3   VGKQLRRKQCLSARKVDEFWQEKKSEELEVDDKDGFTLGPLLSLKEQLDKDKDGESLRRW 62
           VGKQLRRKQCLSARKVDEFWQEKKSEELEVDDKDGFTLGPLLSLKEQLDKDKDGESLRRW
Sbjct: 556 VGKQLRRKQCLSARKVDEFWQEKKSEELEVDDKDGFTLGPLLSLKEQLDKDKDGESLRRW 615

Query: 63  KEKLLGCLERVNKGNLKSSFIPLELFLMNLWKSILHCLYRKIKVVMFYLLVKRDLDINFG 122
           KEKLLGCLERVNKGNLKSSFIPLELFLMNLWKSILHCLYRKIKVVMFYLLVKRDLDINFG
Sbjct: 616 KEKLLGCLERVNKGNLKSSFIPLELFLMNLWKSILHCLYRKIKVVMFYLLVKRDLDINFG 675

[Close]
BLAST of CsaV3_1G004930 vs. NCBI nr
Match: XP_011651610.1 (PREDICTED: rho GDP-dissociation inhibitor 1-like [Cucumis sativus] >KGN58282.1 hypothetical protein Csa_3G607630 [Cucumis sativus])

HSP 1 Score: 102.1 bits (253), Expect = 1.4e-18
Identity = 56/72 (77.78%), Postives = 60/72 (83.33%), Query Frame = 0 

Query: 1  MEVGKQLRRKQ-CLSARKVDEFWQEKKSEELEVDDKDGFTLGPLLSLKEQLDKDKDGESL 60
          MEVGK+L  +    SA KVDEF  EK+SEE EVDDKDGFT GPLLSLKEQL+KDKD ESL
Sbjct: 1  MEVGKRLEEEAGPSSAGKVDEFRHEKESEESEVDDKDGFTPGPLLSLKEQLEKDKDDESL 60

Query: 61 RRWKEKLLGCLE 72
          RRWKEKLLGCLE
Sbjct: 61 RRWKEKLLGCLE 72

[Close]
BLAST of CsaV3_1G004930 vs. NCBI nr
Match: XP_008447394.1 (PREDICTED: rho GDP-dissociation inhibitor 1-like isoform X1 [Cucumis melo])

HSP 1 Score: 101.7 bits (252), Expect = 1.9e-18
Identity = 56/72 (77.78%), Postives = 60/72 (83.33%), Query Frame = 0 

Query: 1  MEVGKQLRRKQ-CLSARKVDEFWQEKKSEELEVDDKDGFTLGPLLSLKEQLDKDKDGESL 60
          MEVGK L  +    SA KVDEF +EK+SEE EVDDKDGFT GPLLSLKEQL+KDKD ESL
Sbjct: 1  MEVGKTLEEEAGPSSAGKVDEFRREKESEESEVDDKDGFTPGPLLSLKEQLEKDKDDESL 60

Query: 61 RRWKEKLLGCLE 72
          RRWKEKLLGCLE
Sbjct: 61 RRWKEKLLGCLE 72

[Close]
BLAST of CsaV3_1G004930 vs. NCBI nr
Match: XP_008447395.1 (PREDICTED: rho GDP-dissociation inhibitor 1-like isoform X2 [Cucumis melo])

HSP 1 Score: 101.7 bits (252), Expect = 1.9e-18
Identity = 56/72 (77.78%), Postives = 60/72 (83.33%), Query Frame = 0 

Query: 1  MEVGKQLRRKQ-CLSARKVDEFWQEKKSEELEVDDKDGFTLGPLLSLKEQLDKDKDGESL 60
          MEVGK L  +    SA KVDEF +EK+SEE EVDDKDGFT GPLLSLKEQL+KDKD ESL
Sbjct: 1  MEVGKTLEEEAGPSSAGKVDEFRREKESEESEVDDKDGFTPGPLLSLKEQLEKDKDDESL 60

Query: 61 RRWKEKLLGCLE 72
          RRWKEKLLGCLE
Sbjct: 61 RRWKEKLLGCLE 72

[Close]
BLAST of CsaV3_1G004930 vs. NCBI nr
Match: XP_022996428.1 (rho GDP-dissociation inhibitor 1-like [Cucurbita maxima])

HSP 1 Score: 83.2 bits (204), Expect = 6.8e-13
Identity = 52/85 (61.18%), Postives = 59/85 (69.41%), Query Frame = 0 

Query: 1  MEVGKQLRRKQ-CLSARKVDEFWQE--------KKSEEL-----EVDDKDGFTLGPLLSL 60
          MEVGK++  +    SA K+DE   E        K+SEE      EVDDK+GFT GPLLSL
Sbjct: 1  MEVGKRVEEEAGPSSAGKIDELRGEKLPQTASGKQSEESEVGEEEVDDKEGFTPGPLLSL 60

Query: 61 KEQLDKDKDGESLRRWKEKLLGCLE 72
          KEQ+DKDKD ESLRRWKEKLLGCLE
Sbjct: 61 KEQIDKDKDDESLRRWKEKLLGCLE 85

[Close]
BLAST of CsaV3_1G004930 vs. TAIR10
Match: AT1G62450.1 (Immunoglobulin E-set superfamily protein)

HSP 1 Score: 55.8 bits (133), Expect = 2.1e-08
Identity = 26/50 (52.00%), Postives = 38/50 (76.00%), Query Frame = 0 

Query: 27 SEELEVDDKDGFTLGPLLSLKEQLDKDKDGESLRRWKEKLLGCLERVNKG 77
          +E+ E D+     LGP+++LKEQL++DKD ESLRRWKE+LLG ++  + G
Sbjct: 34 TEDDEEDEDKKLELGPMIALKEQLERDKDDESLRRWKEQLLGVVDLEDVG 83

[Close]
BLAST of CsaV3_1G004930 vs. TAIR10
Match: AT1G12070.1 (Immunoglobulin E-set superfamily protein)

HSP 1 Score: 54.3 bits (129), Expect = 6.2e-08
Identity = 24/46 (52.17%), Postives = 33/46 (71.74%), Query Frame = 0 

Query: 40 LGPLLSLKEQLDKDKDGESLRRWKEKLLGCLERVNKGNLKSSFIPL 86
          LGP+++LKEQL+KDKD ESLRRWKE+LLG ++    G      + +
Sbjct: 47 LGPMIALKEQLEKDKDDESLRRWKEQLLGSVDLEEVGETPDPLVKI 92

[Close]
BLAST of CsaV3_1G004930 vs. TAIR10
Match: AT3G07880.1 (Immunoglobulin E-set superfamily protein)

HSP 1 Score: 49.7 bits (117), Expect = 1.5e-06
Identity = 22/37 (59.46%), Postives = 29/37 (78.38%), Query Frame = 0 

Query: 40  LGPLLSLKEQLDKDKDGESLRRWKEKLLGCLERVNKG 77
           LGP  ++KE L+KDKD ESLR+WKE+LLG ++  N G
Sbjct: 64  LGPQYTIKEHLEKDKDDESLRKWKEQLLGSVDVTNIG 100

[Close]
BLAST of CsaV3_1G004930 vs. Swiss-Prot
Match: sp|Q9SFC6|GDIR_ARATH (Rho GDP-dissociation inhibitor 1 OS=Arabidopsis thaliana OX=3702 GN=GDI1 PE=1 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 2.7e-05
Identity = 22/37 (59.46%), Postives = 29/37 (78.38%), Query Frame = 0 

Query: 40  LGPLLSLKEQLDKDKDGESLRRWKEKLLGCLERVNKG 77
           LGP  ++KE L+KDKD ESLR+WKE+LLG ++  N G
Sbjct: 64  LGPQYTIKEHLEKDKDDESLRKWKEQLLGSVDVTNIG 100

[Close]
BLAST of CsaV3_1G004930 vs. TrEMBL
Match: tr|A0A0A0LT43|A0A0A0LT43_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G030680 PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 2.2e-60
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0 

Query: 3   VGKQLRRKQCLSARKVDEFWQEKKSEELEVDDKDGFTLGPLLSLKEQLDKDKDGESLRRW 62
           VGKQLRRKQCLSARKVDEFWQEKKSEELEVDDKDGFTLGPLLSLKEQLDKDKDGESLRRW
Sbjct: 556 VGKQLRRKQCLSARKVDEFWQEKKSEELEVDDKDGFTLGPLLSLKEQLDKDKDGESLRRW 615

Query: 63  KEKLLGCLERVNKGNLKSSFIPLELFLMNLWKSILHCLYRKIKVVMFYLLVKRDLDINFG 122
           KEKLLGCLERVNKGNLKSSFIPLELFLMNLWKSILHCLYRKIKVVMFYLLVKRDLDINFG
Sbjct: 616 KEKLLGCLERVNKGNLKSSFIPLELFLMNLWKSILHCLYRKIKVVMFYLLVKRDLDINFG 675

[Close]
BLAST of CsaV3_1G004930 vs. TrEMBL
Match: tr|A0A0A0LC51|A0A0A0LC51_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G607630 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 9.4e-19
Identity = 56/72 (77.78%), Postives = 60/72 (83.33%), Query Frame = 0 

Query: 1  MEVGKQLRRKQ-CLSARKVDEFWQEKKSEELEVDDKDGFTLGPLLSLKEQLDKDKDGESL 60
          MEVGK+L  +    SA KVDEF  EK+SEE EVDDKDGFT GPLLSLKEQL+KDKD ESL
Sbjct: 1  MEVGKRLEEEAGPSSAGKVDEFRHEKESEESEVDDKDGFTPGPLLSLKEQLEKDKDDESL 60

Query: 61 RRWKEKLLGCLE 72
          RRWKEKLLGCLE
Sbjct: 61 RRWKEKLLGCLE 72

[Close]
BLAST of CsaV3_1G004930 vs. TrEMBL
Match: tr|A0A1S3BI82|A0A1S3BI82_CUCME (rho GDP-dissociation inhibitor 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489856 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.2e-18
Identity = 56/72 (77.78%), Postives = 60/72 (83.33%), Query Frame = 0 

Query: 1  MEVGKQLRRKQ-CLSARKVDEFWQEKKSEELEVDDKDGFTLGPLLSLKEQLDKDKDGESL 60
          MEVGK L  +    SA KVDEF +EK+SEE EVDDKDGFT GPLLSLKEQL+KDKD ESL
Sbjct: 1  MEVGKTLEEEAGPSSAGKVDEFRREKESEESEVDDKDGFTPGPLLSLKEQLEKDKDDESL 60

Query: 61 RRWKEKLLGCLE 72
          RRWKEKLLGCLE
Sbjct: 61 RRWKEKLLGCLE 72

[Close]
BLAST of CsaV3_1G004930 vs. TrEMBL
Match: tr|A0A1S3BGS7|A0A1S3BGS7_CUCME (rho GDP-dissociation inhibitor 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103489856 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.2e-18
Identity = 56/72 (77.78%), Postives = 60/72 (83.33%), Query Frame = 0 

Query: 1  MEVGKQLRRKQ-CLSARKVDEFWQEKKSEELEVDDKDGFTLGPLLSLKEQLDKDKDGESL 60
          MEVGK L  +    SA KVDEF +EK+SEE EVDDKDGFT GPLLSLKEQL+KDKD ESL
Sbjct: 1  MEVGKTLEEEAGPSSAGKVDEFRREKESEESEVDDKDGFTPGPLLSLKEQLEKDKDDESL 60

Query: 61 RRWKEKLLGCLE 72
          RRWKEKLLGCLE
Sbjct: 61 RRWKEKLLGCLE 72

[Close]
BLAST of CsaV3_1G004930 vs. TrEMBL
Match: tr|A0A2H3YBJ2|A0A2H3YBJ2_PHODC (rho GDP-dissociation inhibitor 1-like OS=Phoenix dactylifera OX=42345 GN=LOC103711835 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.2e-08
Identity = 35/57 (61.40%), Postives = 41/57 (71.93%), Query Frame = 0 

Query: 23  QEKKSEELEVDDKDGFTLGPLLSLKEQLDKDKDGESLRRWKEKLLGCLERVNKGNLK 80
           +E + EE E    DGF  GPL+ LKEQL+KDKD ESLRRWKEKLLGCLE    G ++
Sbjct: 44  EEVEGEEDEEGAADGFVPGPLIPLKEQLEKDKDDESLRRWKEKLLGCLEGEFNGQME 100

The following BLAST results are available for this feature:
BLAST of CsaV3_1G004930 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN63942.13.3e-60100.00hypothetical protein Csa_1G030680 [Cucumis sativus][more]
XP_011651610.11.4e-1877.78PREDICTED: rho GDP-dissociation inhibitor 1-like [Cucumis sativus] >KGN58282.1 h... [more]
XP_008447394.11.9e-1877.78PREDICTED: rho GDP-dissociation inhibitor 1-like isoform X1 [Cucumis melo][more]
XP_008447395.11.9e-1877.78PREDICTED: rho GDP-dissociation inhibitor 1-like isoform X2 [Cucumis melo][more]
XP_022996428.16.8e-1361.18rho GDP-dissociation inhibitor 1-like [Cucurbita maxima][more]
BLAST of CsaV3_1G004930 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G62450.12.1e-0852.00Immunoglobulin E-set superfamily protein[more]
AT1G12070.16.2e-0852.17Immunoglobulin E-set superfamily protein[more]
AT3G07880.11.5e-0659.46Immunoglobulin E-set superfamily protein[more]
BLAST of CsaV3_1G004930 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9SFC6|GDIR_ARATH2.7e-0559.46Rho GDP-dissociation inhibitor 1 OS=Arabidopsis thaliana OX=3702 GN=GDI1 PE=1 SV... [more]
BLAST of CsaV3_1G004930 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LT43|A0A0A0LT43_CUCSA2.2e-60100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G030680 PE=4 SV=1[more]
tr|A0A0A0LC51|A0A0A0LC51_CUCSA9.4e-1977.78Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G607630 PE=4 SV=1[more]
tr|A0A1S3BI82|A0A1S3BI82_CUCME1.2e-1877.78rho GDP-dissociation inhibitor 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC1... [more]
tr|A0A1S3BGS7|A0A1S3BGS7_CUCME1.2e-1877.78rho GDP-dissociation inhibitor 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC1... [more]
tr|A0A2H3YBJ2|A0A2H3YBJ2_PHODC1.2e-0861.40rho GDP-dissociation inhibitor 1-like OS=Phoenix dactylifera OX=42345 GN=LOC1037... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005094Rho GDP-dissociation inhibitor activity
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR014756Ig_E-set
IPR024792RhoGDI_dom_sf
IPR000406Rho_GDI
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0007186 G-protein coupled receptor signaling pathway
biological_process GO:0050790 regulation of catalytic activity
cellular_component GO:0005737 cytoplasm
molecular_function GO:0005094 Rho GDP-dissociation inhibitor activity
molecular_function GO:0031683 G-protein beta/gamma-subunit complex binding
molecular_function GO:0003924 GTPase activity
molecular_function GO:0019001 guanyl nucleotide binding
molecular_function GO:0004871 signal transducer activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G004930.1CsaV3_1G004930.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000406Rho protein GDP-dissociation inhibitorPFAMPF02115Rho_GDIcoord: 24..71
e-value: 7.7E-11
score: 42.0
IPR000406Rho protein GDP-dissociation inhibitorPANTHERPTHR10980RHO GDP-DISSOCIATION INHIBITORcoord: 19..79
IPR024792Rho GDP-dissociation inhibitor domain superfamilyGENE3DG3DSA:2.70.50.30coord: 36..96
e-value: 1.0E-6
score: 30.6
NoneNo IPR availablePANTHERPTHR10980:SF16SUBFAMILY NOT NAMEDcoord: 19..79
IPR014756Immunoglobulin E-setSUPERFAMILYSSF81296E set domainscoord: 18..79

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G004930CSPI01G05000Wild cucumber (PI 183967)cpicucB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G004930Silver-seed gourdcarcucB0552
CsaV3_1G004930Silver-seed gourdcarcucB0555
CsaV3_1G004930Cucumber (Gy14) v2cgybcucB002
CsaV3_1G004930Cucumber (Gy14) v1cgycucB143
CsaV3_1G004930Cucurbita maxima (Rimu)cmacucB0247
CsaV3_1G004930Cucurbita maxima (Rimu)cmacucB0513
CsaV3_1G004930Cucurbita maxima (Rimu)cmacucB0519
CsaV3_1G004930Cucurbita moschata (Rifu)cmocucB0233
CsaV3_1G004930Cucurbita moschata (Rifu)cmocucB0501
CsaV3_1G004930Cucurbita moschata (Rifu)cmocucB0506
CsaV3_1G004930Cucurbita pepo (Zucchini)cpecucB0660
CsaV3_1G004930Cucurbita pepo (Zucchini)cpecucB0665
CsaV3_1G004930Bottle gourd (USVL1VR-Ls)cuclsiB037
CsaV3_1G004930Bottle gourd (USVL1VR-Ls)cuclsiB022
CsaV3_1G004930Melon (DHL92) v3.5.1cucmeB018
CsaV3_1G004930Melon (DHL92) v3.6.1cucmedB016
CsaV3_1G004930Watermelon (Charleston Gray)cucwcgB061
CsaV3_1G004930Watermelon (Charleston Gray)cucwcgB063
CsaV3_1G004930Watermelon (97103) v1cucwmB068
CsaV3_1G004930Watermelon (97103) v1cucwmB070
CsaV3_1G004930Watermelon (97103) v2cucwmbB052
CsaV3_1G004930Watermelon (97103) v2cucwmbB054
CsaV3_1G004930Wax gourdcucwgoB036
CsaV3_1G004930Wax gourdcucwgoB059