CsaV3_1G004490 (gene) Cucumber (Chinese Long) v3

NameCsaV3_1G004490
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 2834685 .. 2834954 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACATCGACTCAAATCCGATGTTGGCAATGATAAGGCCTGATGGCGCTGTTGCCTATGCAAAGCACATCAATAAGCAAGACTGCTCATGGATTCCTATACCAAATATACCTCGGGTTTGTTGTGTGTGTGTGTTTTGTAGCTCACTGAAGGCATGGAGCAGCCTACCAAAAAAGAAAAGAAAAAAAGACAAAAAAGGACTTCTACAACAGGTTACACCATCAAAGCCATCCAAACCAATCGAGGGAAGTCGTATCCAAACCGGCTAA

mRNA sequence

ATGGACATCGACTCAAATCCGATGTTGGCAATGATAAGGCCTGATGGCGCTGTTGCCTATGCAAAGCACATCAATAAGCAAGACTGCTCATGGATTCCTATACCAAATATACCTCGGGTTACACCATCAAAGCCATCCAAACCAATCGAGGGAAGTCGTATCCAAACCGGCTAA

Coding sequence (CDS)

ATGGACATCGACTCAAATCCGATGTTGGCAATGATAAGGCCTGATGGCGCTGTTGCCTATGCAAAGCACATCAATAAGCAAGACTGCTCATGGATTCCTATACCAAATATACCTCGGGTTACACCATCAAAGCCATCCAAACCAATCGAGGGAAGTCGTATCCAAACCGGCTAA

Protein sequence

MDIDSNPMLAMIRPDGAVAYAKHINKQDCSWIPIPNIPRVTPSKPSKPIEGSRIQTG
BLAST of CsaV3_1G004490 vs. NCBI nr
Match: KGN63890.1 (hypothetical protein Csa_1G025230 [Cucumis sativus])

HSP 1 Score: 124.8 bits (312), Expect = 9.7e-26
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0

Query: 1  MDIDSNPMLAMIRPDGAVAYAKHINKQDCSWIPIPNIPRVTPSKPSKPIEGSRIQTG 58
          MDIDSNPMLAMIRPDGAVAYAKHINKQDCSWIPIPNIPRVTPSKPSKPIEGSRIQTG
Sbjct: 1  MDIDSNPMLAMIRPDGAVAYAKHINKQDCSWIPIPNIPRVTPSKPSKPIEGSRIQTG 57

BLAST of CsaV3_1G004490 vs. TrEMBL
Match: tr|A0A0A0LPR6|A0A0A0LPR6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025230 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 6.4e-26
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0

Query: 1  MDIDSNPMLAMIRPDGAVAYAKHINKQDCSWIPIPNIPRVTPSKPSKPIEGSRIQTG 58
          MDIDSNPMLAMIRPDGAVAYAKHINKQDCSWIPIPNIPRVTPSKPSKPIEGSRIQTG
Sbjct: 1  MDIDSNPMLAMIRPDGAVAYAKHINKQDCSWIPIPNIPRVTPSKPSKPIEGSRIQTG 57

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN63890.19.7e-26100.00hypothetical protein Csa_1G025230 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0LPR6|A0A0A0LPR6_CUCSA6.4e-26100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025230 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G004490.1CsaV3_1G004490.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 36..57

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None