CsaV3_1G003900 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G003900
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 2416946 .. 2417233 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGACACTCTTCAAAGTGTTGGCGACAAGCATCAAACTGATGATACCAAATATTACCAAAGCTCATCTTTCTCCCTCTACAATCACACCCATCCGATTGAAAATTTTAGTTTTTTCAATTTTACTTTCTTGATTTTCAGCAAGAATCAAGATCCCAACTCATCACACGCTATTTTGACATTTGTTGCAATTGCAAAGACTGATCGAACCGACTCTTTTTGCTACTCTGTCACCTCGAGTCATTCTTCAAAATTCGGCGAATCGGCGCGGTGGGTTTGTAGATAA

mRNA sequence

ATGAAGGACACTCTTCAAAGTGTTGGCGACAAGCATCAAACTGATGATACCAAATATTACCAAAGCTCATCTTTCTCCCTCTACAATCACACCCATCCGATTGAAAATTTTAGTTTTTTCAATTTTACTTTCTTGATTTTCAGCAAGAATCAAGATCCCAACTCATCACACGCTATTTTGACATTTGTTGCAATTGCAAAGACTGATCGAACCGACTCTTTTTGCTACTCTGTCACCTCGAGTCATTCTTCAAAATTCGGCGAATCGGCGCGGTGGGTTTGTAGATAA

Coding sequence (CDS)

ATGAAGGACACTCTTCAAAGTGTTGGCGACAAGCATCAAACTGATGATACCAAATATTACCAAAGCTCATCTTTCTCCCTCTACAATCACACCCATCCGATTGAAAATTTTAGTTTTTTCAATTTTACTTTCTTGATTTTCAGCAAGAATCAAGATCCCAACTCATCACACGCTATTTTGACATTTGTTGCAATTGCAAAGACTGATCGAACCGACTCTTTTTGCTACTCTGTCACCTCGAGTCATTCTTCAAAATTCGGCGAATCGGCGCGGTGGGTTTGTAGATAA

Protein sequence

MKDTLQSVGDKHQTDDTKYYQSSSFSLYNHTHPIENFSFFNFTFLIFSKNQDPNSSHAILTFVAIAKTDRTDSFCYSVTSSHSSKFGESARWVCR
Homology
[Close]
BLAST of CsaV3_1G003900 vs. NCBI nr
Match: KGN63828.1 (hypothetical protein Csa_1G024140 [Cucumis sativus])

HSP 1 Score: 193.0 bits (489), Expect = 4.8e-46
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 1  MKDTLQSVGDKHQTDDTKYYQSSSFSLYNHTHPIENFSFFNFTFLIFSKNQDPNSSHAIL 60
          MKDTLQSVGDKHQTDDTKYYQSSSFSLYNHTHPIENFSFFNFTFLIFSKNQDPNSSHAIL
Sbjct: 1  MKDTLQSVGDKHQTDDTKYYQSSSFSLYNHTHPIENFSFFNFTFLIFSKNQDPNSSHAIL 60

Query: 61 TFVAIAKTDRTDSFCYSVTSSHSSKFGESARWVCR 96
          TFVAIAKTDRTDSFCYSVTSSHSSKFGESARWVCR
Sbjct: 61 TFVAIAKTDRTDSFCYSVTSSHSSKFGESARWVCR 95

[Close]
BLAST of CsaV3_1G003900 vs. TrEMBL
Match: tr|A0A0A0LPT4|A0A0A0LPT4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G024140 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 3.2e-46
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0 

Query: 1  MKDTLQSVGDKHQTDDTKYYQSSSFSLYNHTHPIENFSFFNFTFLIFSKNQDPNSSHAIL 60
          MKDTLQSVGDKHQTDDTKYYQSSSFSLYNHTHPIENFSFFNFTFLIFSKNQDPNSSHAIL
Sbjct: 1  MKDTLQSVGDKHQTDDTKYYQSSSFSLYNHTHPIENFSFFNFTFLIFSKNQDPNSSHAIL 60

Query: 61 TFVAIAKTDRTDSFCYSVTSSHSSKFGESARWVCR 96
          TFVAIAKTDRTDSFCYSVTSSHSSKFGESARWVCR
Sbjct: 61 TFVAIAKTDRTDSFCYSVTSSHSSKFGESARWVCR 95

The following BLAST results are available for this feature:
BLAST of CsaV3_1G003900 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN63828.14.8e-46100.00hypothetical protein Csa_1G024140 [Cucumis sativus][more]
BLAST of CsaV3_1G003900 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G003900 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G003900 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LPT4|A0A0A0LPT4_CUCSA3.2e-46100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G024140 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G003900.1CsaV3_1G003900.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G003900Silver-seed gourdcarcucB0419
CsaV3_1G003900Silver-seed gourdcarcucB0494
CsaV3_1G003900Silver-seed gourdcarcucB0549
CsaV3_1G003900Silver-seed gourdcarcucB0629
CsaV3_1G003900Silver-seed gourdcarcucB0880
CsaV3_1G003900Cucumber (Gy14) v2cgybcucB002
CsaV3_1G003900Cucumber (Gy14) v2cgybcucB003
CsaV3_1G003900Cucumber (Gy14) v2cgybcucB201
CsaV3_1G003900Cucumber (Gy14) v1cgycucB143
CsaV3_1G003900Cucumber (Gy14) v1cgycucB164
CsaV3_1G003900Cucumber (Gy14) v1cgycucB436
CsaV3_1G003900Cucurbita maxima (Rimu)cmacucB0071
CsaV3_1G003900Cucurbita maxima (Rimu)cmacucB0101
CsaV3_1G003900Cucurbita maxima (Rimu)cmacucB0252
CsaV3_1G003900Cucurbita maxima (Rimu)cmacucB0466
CsaV3_1G003900Cucurbita maxima (Rimu)cmacucB0481
CsaV3_1G003900Cucurbita maxima (Rimu)cmacucB0817
CsaV3_1G003900Cucurbita moschata (Rifu)cmocucB0057
CsaV3_1G003900Cucurbita moschata (Rifu)cmocucB0091
CsaV3_1G003900Cucurbita moschata (Rifu)cmocucB0238
CsaV3_1G003900Cucurbita moschata (Rifu)cmocucB0467
CsaV3_1G003900Cucurbita moschata (Rifu)cmocucB0803
CsaV3_1G003900Cucurbita pepo (Zucchini)cpecucB0033
CsaV3_1G003900Cucurbita pepo (Zucchini)cpecucB0026
CsaV3_1G003900Cucurbita pepo (Zucchini)cpecucB0431
CsaV3_1G003900Cucurbita pepo (Zucchini)cpecucB0474
CsaV3_1G003900Cucurbita pepo (Zucchini)cpecucB0627
CsaV3_1G003900Cucurbita pepo (Zucchini)cpecucB0815
CsaV3_1G003900Wild cucumber (PI 183967)cpicucB001
CsaV3_1G003900Wild cucumber (PI 183967)cpicucB002
CsaV3_1G003900Wild cucumber (PI 183967)cpicucB255
CsaV3_1G003900Bottle gourd (USVL1VR-Ls)cuclsiB024
CsaV3_1G003900Bottle gourd (USVL1VR-Ls)cuclsiB060
CsaV3_1G003900Bottle gourd (USVL1VR-Ls)cuclsiB082
CsaV3_1G003900Melon (DHL92) v3.5.1cucmeB006
CsaV3_1G003900Melon (DHL92) v3.5.1cucmeB026
CsaV3_1G003900Melon (DHL92) v3.5.1cucmeB055
CsaV3_1G003900Melon (DHL92) v3.6.1cucmedB006
CsaV3_1G003900Melon (DHL92) v3.6.1cucmedB024
CsaV3_1G003900Melon (DHL92) v3.6.1cucmedB051
CsaV3_1G003900Watermelon (Charleston Gray)cucwcgB064
CsaV3_1G003900Watermelon (Charleston Gray)cucwcgB071
CsaV3_1G003900Watermelon (Charleston Gray)cucwcgB089
CsaV3_1G003900Watermelon (97103) v1cucwmB045
CsaV3_1G003900Watermelon (97103) v1cucwmB071
CsaV3_1G003900Watermelon (97103) v1cucwmB106
CsaV3_1G003900Watermelon (97103) v2cucwmbB055
CsaV3_1G003900Watermelon (97103) v2cucwmbB060
CsaV3_1G003900Watermelon (97103) v2cucwmbB077
CsaV3_1G003900Wax gourdcucwgoB012
CsaV3_1G003900Wax gourdcucwgoB042
CsaV3_1G003900Wax gourdcucwgoB075
CsaV3_1G003900Cucumber (Chinese Long) v3cuccucB000
CsaV3_1G003900Cucumber (Chinese Long) v3cuccucB036