CsaV3_1G002830 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G002830
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Descriptionchaperone protein ClpB1
Locationchr1 : 1782096 .. 1783164 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCTATGAGAAAGCAATTCATTCAAAAGAGCCTTTCTAAAACTATGTATGCTTCCTCGATAAGAAATGCAAGAAACCCTAACCACTTCTCAACAATATAACTGCACCGAACAGAAAAGGGCAATATGGGTCTATTAGATGACTAATTTCACGATCTCAACAACAAGCTCCATCAAATCTGACAAAACAATAGAGTCGTTTTTCTTCCATACTATTTTCTATCCCATTCTATAAACAACAATAATAAAATGCTCAAAATGGCCGAATCCGCGCTTGAGACTTACGGCCACGATCTCGCCGAAACAGCAGAGAAACAAACTATCGATCCAATCTTCCGCCGCCGCCAAGAAATCCGCCATCTCCGGCGACGGAAAAACAGCTATCGTCGAAGCACTCGCACAGAAAATCGCCTCCGGAAATGTCCTGACCAAGCTCTCCGGCGCAAGAATCGTAGAACTGGACATGGGAGCCCTACACGCCGGAGCAATTTACGTAGGGCAATTGGAAGAGAGATTGAAGAATGTGGTGACGACGGAAGTGAGAAAGGATCGGAAGGAAATTACAGTGATAGTGCTTATAGTGTTTATAGACGAAATTCATATGTTGGTCCGACATGATCAAGGAACCGCCGCGGAGATTCTGAAACCGGCGCTGTGGAGAGGGAATTTCCGGTGCATTGGAGCGACGACGTTGAAGGAATACAAAAGGTATATTGGCGAGGAGATTTAAACAAGTTTATGTGAATGAACCAAGTGTTGAAGATTCGATTAGCATTCTCAGAGTATTGAAGGAGAGATATGAAAAACATCATGTTCTTAAAATTAAATATACTGCTCTTGTTGCTGCTGCTAAATTGTCACCATCACTACATCACAGGTATAATTAAAAAAAACTTTACTATAAAAATCTACGTAAGAAAAATACAGCTTAGATATGACATTGTTGTAAGCTATTTTGATTTACTTCAAAATATTTTAGTGATGCGGGGAGATTGATGCATCAAAATGTTTAATGCATTAAAAATATCACTTTTGGCATGCAGCATTTCTTTATTTCAATGTTAAACTCAG

mRNA sequence

ATGCTCAAAATGGCCGAATCCGCGCTTGAGACTTACGGCCACGATCTCGCCGAAACAGCAGAGAAACAAACTATCGATCCAATCTTCCGCCGCCGCCAAGAAATCCGCCATCTCCGGCGACGGAAAAACAGCTATCGTCGAAGCACTCGCACAGAAAATCGCCTCCGGAAATGTCCTGACCAAGCTCTCCGGCGCAAGAATCGTAGAACTGGACATGGGAGCCCTACACGCCGGAGCAATTTACGTAGGGCAATTGGAAGAGAGATTGAAGAATGTGGTGACGACGGAAGTGAGAAAGGATCGGAAGGAAATTACAGTGATAGTGCTTATAGTGTTTATAGACGAAATTCATATGTTGGTCCGACATGA

Coding sequence (CDS)

ATGCTCAAAATGGCCGAATCCGCGCTTGAGACTTACGGCCACGATCTCGCCGAAACAGCAGAGAAACAAACTATCGATCCAATCTTCCGCCGCCGCCAAGAAATCCGCCATCTCCGGCGACGGAAAAACAGCTATCGTCGAAGCACTCGCACAGAAAATCGCCTCCGGAAATGTCCTGACCAAGCTCTCCGGCGCAAGAATCGTAGAACTGGACATGGGAGCCCTACACGCCGGAGCAATTTACGTAGGGCAATTGGAAGAGAGATTGAAGAATGTGGTGACGACGGAAGTGAGAAAGGATCGGAAGGAAATTACAGTGATAGTGCTTATAGTGTTTATAGACGAAATTCATATGTTGGTCCGACATGA

Protein sequence

MLKMAESALETYGHDLAETAEKQTIDPIFRRRQEIRHLRRRKNSYRRSTRTENRLRKCPDQALRRKNRRTGHGSPTRRSNLRRAIGREIEECGDDGSEKGSEGNYSDSAYSVYRRNSYVGPT
Homology
[Close]
BLAST of CsaV3_1G002830 vs. NCBI nr
Match: KGN63719.1 (hypothetical protein Csa_1G013180 [Cucumis sativus])

HSP 1 Score: 184.1 bits (466), Expect = 2.8e-43
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 1  MLKMAESALETYGHDLAETAEKQTIDPIFRRRQEIRHLRRRKNSYRRSTRTENRLRKCPD 60
          MLKMAESALETYGHDLAETAEKQTIDPIFRRRQEIRHLRRRKNSYRRSTRTENRLRKCPD
Sbjct: 1  MLKMAESALETYGHDLAETAEKQTIDPIFRRRQEIRHLRRRKNSYRRSTRTENRLRKCPD 60

Query: 61 QALRRKNRRTGHGSPTRRSNLRRAIGREIEECGDDG 97
          QALRRKNRRTGHGSPTRRSNLRRAIGREIEECGDDG
Sbjct: 61 QALRRKNRRTGHGSPTRRSNLRRAIGREIEECGDDG 96

[Close]
BLAST of CsaV3_1G002830 vs. NCBI nr
Match: XP_008453261.1 (PREDICTED: chaperone protein ClpB1 [Cucumis melo])

HSP 1 Score: 57.4 bits (137), Expect = 4.0e-05
Identity = 28/35 (80.00%), Postives = 30/35 (85.71%), Query Frame = 0 

Query: 4  MAESALETYGHDLAETAEKQTIDPIFRRRQEIRHL 39
          MA+SALETYGHDL E AEKQT+DPIF R QEIR L
Sbjct: 1  MAKSALETYGHDLVEKAEKQTLDPIFGRHQEIRRL 35

[Close]
BLAST of CsaV3_1G002830 vs. NCBI nr
Match: XP_004138316.1 (PREDICTED: chaperone protein ClpB1 [Cucumis sativus] >KGN63718.1 hypothetical protein Csa_1G013170 [Cucumis sativus])

HSP 1 Score: 52.8 bits (125), Expect = 9.9e-04
Identity = 26/35 (74.29%), Postives = 29/35 (82.86%), Query Frame = 0 

Query: 4  MAESALETYGHDLAETAEKQTIDPIFRRRQEIRHL 39
          MA+SALETYGHDL E AEKQT+DPIF R +EI  L
Sbjct: 1  MAKSALETYGHDLVEKAEKQTLDPIFGRHKEICRL 35

[Close]
BLAST of CsaV3_1G002830 vs. TrEMBL
Match: tr|A0A0A0LRT5|A0A0A0LRT5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G013180 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.9e-43
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 1  MLKMAESALETYGHDLAETAEKQTIDPIFRRRQEIRHLRRRKNSYRRSTRTENRLRKCPD 60
          MLKMAESALETYGHDLAETAEKQTIDPIFRRRQEIRHLRRRKNSYRRSTRTENRLRKCPD
Sbjct: 1  MLKMAESALETYGHDLAETAEKQTIDPIFRRRQEIRHLRRRKNSYRRSTRTENRLRKCPD 60

Query: 61 QALRRKNRRTGHGSPTRRSNLRRAIGREIEECGDDG 97
          QALRRKNRRTGHGSPTRRSNLRRAIGREIEECGDDG
Sbjct: 61 QALRRKNRRTGHGSPTRRSNLRRAIGREIEECGDDG 96

[Close]
BLAST of CsaV3_1G002830 vs. TrEMBL
Match: tr|A0A1S3BWY7|A0A1S3BWY7_CUCME (chaperone protein ClpB1 OS=Cucumis melo OX=3656 GN=LOC103494035 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.7e-05
Identity = 28/35 (80.00%), Postives = 30/35 (85.71%), Query Frame = 0 

Query: 4  MAESALETYGHDLAETAEKQTIDPIFRRRQEIRHL 39
          MA+SALETYGHDL E AEKQT+DPIF R QEIR L
Sbjct: 1  MAKSALETYGHDLVEKAEKQTLDPIFGRHQEIRRL 35

[Close]
BLAST of CsaV3_1G002830 vs. TrEMBL
Match: tr|A0A0A0LPI1|A0A0A0LPI1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G013170 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 6.5e-04
Identity = 26/35 (74.29%), Postives = 29/35 (82.86%), Query Frame = 0 

Query: 4  MAESALETYGHDLAETAEKQTIDPIFRRRQEIRHL 39
          MA+SALETYGHDL E AEKQT+DPIF R +EI  L
Sbjct: 1  MAKSALETYGHDLVEKAEKQTLDPIFGRHKEICRL 35

The following BLAST results are available for this feature:
BLAST of CsaV3_1G002830 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN63719.12.8e-43100.00hypothetical protein Csa_1G013180 [Cucumis sativus][more]
XP_008453261.14.0e-0580.00PREDICTED: chaperone protein ClpB1 [Cucumis melo][more]
XP_004138316.19.9e-0474.29PREDICTED: chaperone protein ClpB1 [Cucumis sativus] >KGN63718.1 hypothetical pr... [more]
BLAST of CsaV3_1G002830 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G002830 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G002830 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LRT5|A0A0A0LRT5_CUCSA1.9e-43100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G013180 PE=4 SV=1[more]
tr|A0A1S3BWY7|A0A1S3BWY7_CUCME2.7e-0580.00chaperone protein ClpB1 OS=Cucumis melo OX=3656 GN=LOC103494035 PE=4 SV=1[more]
tr|A0A0A0LPI1|A0A0A0LPI1_CUCSA6.5e-0474.29Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G013170 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G002830.1CsaV3_1G002830.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 48..67
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 102..122
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 42..122
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 81..101

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G002830CSPI01G02790Wild cucumber (PI 183967)cpicucB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G002830Watermelon (97103) v2cucwmbB055
CsaV3_1G002830Watermelon (97103) v2cucwmbB059
CsaV3_1G002830Watermelon (97103) v2cucwmbB076
CsaV3_1G002830Wax gourdcucwgoB056
CsaV3_1G002830Wax gourdcucwgoB076
CsaV3_1G002830Wax gourdcucwgoB122
CsaV3_1G002830Cucumber (Chinese Long) v3cuccucB000
CsaV3_1G002830Cucumber (Chinese Long) v3cuccucB035
CsaV3_1G002830Silver-seed gourdcarcucB0419
CsaV3_1G002830Silver-seed gourdcarcucB0629
CsaV3_1G002830Melon (DHL92) v3.5.1cucmeB053
CsaV3_1G002830Cucumber (Gy14) v2cgybcucB002
CsaV3_1G002830Cucumber (Gy14) v2cgybcucB003
CsaV3_1G002830Cucumber (Gy14) v1cgycucB144
CsaV3_1G002830Cucumber (Gy14) v1cgycucB314
CsaV3_1G002830Cucumber (Gy14) v1cgycucB435
CsaV3_1G002830Cucurbita maxima (Rimu)cmacucB0101
CsaV3_1G002830Cucurbita maxima (Rimu)cmacucB0252
CsaV3_1G002830Cucurbita maxima (Rimu)cmacucB0482
CsaV3_1G002830Cucurbita maxima (Rimu)cmacucB0814
CsaV3_1G002830Cucurbita moschata (Rifu)cmocucB0242
CsaV3_1G002830Cucurbita moschata (Rifu)cmocucB0091
CsaV3_1G002830Cucurbita moschata (Rifu)cmocucB0798
CsaV3_1G002830Cucurbita pepo (Zucchini)cpecucB0027
CsaV3_1G002830Cucurbita pepo (Zucchini)cpecucB0470
CsaV3_1G002830Cucurbita pepo (Zucchini)cpecucB0627
CsaV3_1G002830Cucurbita pepo (Zucchini)cpecucB0814
CsaV3_1G002830Wild cucumber (PI 183967)cpicucB002
CsaV3_1G002830Wild cucumber (PI 183967)cpicucB254
CsaV3_1G002830Bottle gourd (USVL1VR-Ls)cuclsiB061
CsaV3_1G002830Bottle gourd (USVL1VR-Ls)cuclsiB024
CsaV3_1G002830Bottle gourd (USVL1VR-Ls)cuclsiB081
CsaV3_1G002830Melon (DHL92) v3.5.1cucmeB005
CsaV3_1G002830Melon (DHL92) v3.5.1cucmeB026
CsaV3_1G002830Melon (DHL92) v3.6.1cucmedB005
CsaV3_1G002830Melon (DHL92) v3.6.1cucmedB024
CsaV3_1G002830Melon (DHL92) v3.6.1cucmedB050
CsaV3_1G002830Watermelon (Charleston Gray)cucwcgB064
CsaV3_1G002830Watermelon (Charleston Gray)cucwcgB070
CsaV3_1G002830Watermelon (Charleston Gray)cucwcgB088
CsaV3_1G002830Watermelon (97103) v1cucwmB044
CsaV3_1G002830Watermelon (97103) v1cucwmB071
CsaV3_1G002830Watermelon (97103) v1cucwmB105