CsaV3_1G002480 (gene) Cucumber (Chinese Long) v3

NameCsaV3_1G002480
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 1555256 .. 1555599 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCATTTCAACAATTTACAAAGGCGCAGCCATAGCAGCAAGCAGCAGCAGCCATGCCCCCAACGCCCCAATGCCTCAACGAACCAACGGCGGAGCGTCATCGACGGACGTCGGGGTCCACCACTACCTGATAATATGACGGGATTTTTGTCCATTTACGATTACGCCCCCCTTCCTCTAACGGTCGACACGCAATCAGCGGGGCCCGCATTTCTTTTCACCCGCCATTCTCCAATTGGACGTGGAAGGTTCACGTCGTTGCTGCTGCTGCCGTCACCACCATATAATAGCCGTCAAAACAACGTCGTTTTTCTCCCCACCCCCTCCCTCTCTCTGCCCTAA

mRNA sequence

GGGCATTTCAACAATTTACAAAGGCGCAGCCATAGCAGCAAGCAGCAGCAGCCATGCCCCCAACGCCCCAATGCCTCAACGAACCAACGGCGGAGCGTCATCGACGGACGTCGGGGTCCACCACTACCTGATAATATGACGGGATTTTTGTCCATTTACGATTACGCCCCCCTTCCTCTAACGGTCGACACGCAATCAGCGGGGCCCGCATTTCTTTTCACCCGCCATTCTCCAATTGGACGTGGAAGGTTCACGTCGTTGCTGCTGCTGCCGTCACCACCATATAATAGCCGTCAAAACAACGTCGTTTTTCTCCCCACCCCCTCCCTCTCTCTGCCCTA

Coding sequence (CDS)

GGGCATTTCAACAATTTACAAAGGCGCAGCCATAGCAGCAAGCAGCAGCAGCCATGCCCCCAACGCCCCAATGCCTCAACGAACCAACGGCGGAGCGTCATCGACGGACGTCGGGGTCCACCACTACCTGATAATATGACGGGATTTTTGTCCATTTACGATTACGCCCCCCTTCCTCTAACGGTCGACACGCAATCAGCGGGGCCCGCATTTCTTTTCACCCGCCATTCTCCAATTGGACGTGGAAGGTTCACGTCGTTGCTGCTGCTGCCGTCACCACCATATAATAGCCGTCAAAACAACGTCGTTTTTCTCCCCACCCCCTCCCTCTCTCTGCCCTA

Protein sequence

GHFNNLQRRSHSSKQQQPCPQRPNASTNQRRSVIDGRRGPPLPDNMTGFLSIYDYAPLPLTVDTQSAGPAFLFTRHSPIGRGRFTSLLLLPSPPYNSRQNNVVFLPTPSLSLPX
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G002480.1CsaV3_1G002480.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..46
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..33

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G002480CSPI01G02430Wild cucumber (PI 183967)cpicucB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G002480Cucumber (Chinese Long) v3cuccucB000
CsaV3_1G002480Cucumber (Chinese Long) v3cuccucB035
CsaV3_1G002480Silver-seed gourdcarcucB0059
CsaV3_1G002480Silver-seed gourdcarcucB0496
CsaV3_1G002480Silver-seed gourdcarcucB0646
CsaV3_1G002480Melon (DHL92) v3.5.1cucmeB053
CsaV3_1G002480Cucumber (Gy14) v2cgybcucB002
CsaV3_1G002480Cucumber (Gy14) v2cgybcucB003
CsaV3_1G002480Cucumber (Gy14) v1cgycucB144
CsaV3_1G002480Cucumber (Gy14) v1cgycucB314
CsaV3_1G002480Cucumber (Gy14) v1cgycucB435
CsaV3_1G002480Cucurbita maxima (Rimu)cmacucB0058
CsaV3_1G002480Cucurbita maxima (Rimu)cmacucB0112
CsaV3_1G002480Cucurbita maxima (Rimu)cmacucB0482
CsaV3_1G002480Cucurbita maxima (Rimu)cmacucB0514
CsaV3_1G002480Cucurbita maxima (Rimu)cmacucB0814
CsaV3_1G002480Cucurbita moschata (Rifu)cmocucB0044
CsaV3_1G002480Cucurbita moschata (Rifu)cmocucB0091
CsaV3_1G002480Cucurbita moschata (Rifu)cmocucB0502
CsaV3_1G002480Cucurbita moschata (Rifu)cmocucB0798
CsaV3_1G002480Cucurbita pepo (Zucchini)cpecucB0027
CsaV3_1G002480Cucurbita pepo (Zucchini)cpecucB0442
CsaV3_1G002480Cucurbita pepo (Zucchini)cpecucB0470
CsaV3_1G002480Cucurbita pepo (Zucchini)cpecucB0667
CsaV3_1G002480Cucurbita pepo (Zucchini)cpecucB0814
CsaV3_1G002480Wild cucumber (PI 183967)cpicucB002
CsaV3_1G002480Wild cucumber (PI 183967)cpicucB254
CsaV3_1G002480Bottle gourd (USVL1VR-Ls)cuclsiB061
CsaV3_1G002480Bottle gourd (USVL1VR-Ls)cuclsiB024
CsaV3_1G002480Bottle gourd (USVL1VR-Ls)cuclsiB081
CsaV3_1G002480Melon (DHL92) v3.5.1cucmeB005
CsaV3_1G002480Melon (DHL92) v3.5.1cucmeB026
CsaV3_1G002480Melon (DHL92) v3.6.1cucmedB005
CsaV3_1G002480Melon (DHL92) v3.6.1cucmedB024
CsaV3_1G002480Melon (DHL92) v3.6.1cucmedB050
CsaV3_1G002480Watermelon (Charleston Gray)cucwcgB064
CsaV3_1G002480Watermelon (Charleston Gray)cucwcgB070
CsaV3_1G002480Watermelon (Charleston Gray)cucwcgB088
CsaV3_1G002480Watermelon (97103) v1cucwmB044
CsaV3_1G002480Watermelon (97103) v1cucwmB071
CsaV3_1G002480Watermelon (97103) v1cucwmB105
CsaV3_1G002480Watermelon (97103) v2cucwmbB055
CsaV3_1G002480Watermelon (97103) v2cucwmbB059
CsaV3_1G002480Watermelon (97103) v2cucwmbB076
CsaV3_1G002480Wax gourdcucwgoB056
CsaV3_1G002480Wax gourdcucwgoB076
CsaV3_1G002480Wax gourdcucwgoB103
CsaV3_1G002480Wax gourdcucwgoB125