CsaV3_1G002170 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G002170
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 1405481 .. 1405736 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACAGTACAGGGGAGCTTCTAAGAAAATTCAGAAAGTTAAAAGATAATAAGAATAAGAAAAGGTGATGGTTGAAATTGAATAACAATATATATATATATATATATATAGTAATTATATTTATATAGATAGTAATAATAATAATTTAGTAGAGGAATGGGAGATGAACCGACCCGACCCGGTCCAGTAGGGCAACCAAGTTTGCTGGCTAACCTCGGGATCAAGGCCGTTGACTCCATATTATTAAGGATATAA

mRNA sequence

ATGTACAGTACAGGGGAGCTTCTAAGAAAATTCAGAAAGTTAAAAGATAATAAGAATAAGAAAAGTAGAGGAATGGGAGATGAACCGACCCGACCCGGTCCAGTAGGGCAACCAAGTTTGCTGGCTAACCTCGGGATCAAGGCCGTTGACTCCATATTATTAAGGATATAA

Coding sequence (CDS)

ATGTACAGTACAGGGGAGCTTCTAAGAAAATTCAGAAAGTTAAAAGATAATAAGAATAAGAAAAGTAGAGGAATGGGAGATGAACCGACCCGACCCGGTCCAGTAGGGCAACCAAGTTTGCTGGCTAACCTCGGGATCAAGGCCGTTGACTCCATATTATTAAGGATATAA

Protein sequence

MYSTGELLRKFRKLKDNKNKKSRGMGDEPTRPGPVGQPSLLANLGIKAVDSILLRI
Homology
[Close]
BLAST of CsaV3_1G002170 vs. NCBI nr
Match: KGN63653.1 (hypothetical protein Csa_1G009080 [Cucumis sativus])

HSP 1 Score: 113.2 bits (282), Expect = 2.9e-22
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0 

Query: 1  MYSTGELLRKFRKLKDNKNKKSRGMGDEPTRPGPVGQPSLLANLGIKAVDSILLRI 57
          MYSTGELLRKFRKLKDNKNKKSRGMGDEPTRPGPVGQPSLLANLGIKAVDSILLRI
Sbjct: 1  MYSTGELLRKFRKLKDNKNKKSRGMGDEPTRPGPVGQPSLLANLGIKAVDSILLRI 56

[Close]
BLAST of CsaV3_1G002170 vs. TrEMBL
Match: tr|A0A0A0LPC2|A0A0A0LPC2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G009080 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.9e-22
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0 

Query: 1  MYSTGELLRKFRKLKDNKNKKSRGMGDEPTRPGPVGQPSLLANLGIKAVDSILLRI 57
          MYSTGELLRKFRKLKDNKNKKSRGMGDEPTRPGPVGQPSLLANLGIKAVDSILLRI
Sbjct: 1  MYSTGELLRKFRKLKDNKNKKSRGMGDEPTRPGPVGQPSLLANLGIKAVDSILLRI 56

The following BLAST results are available for this feature:
BLAST of CsaV3_1G002170 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN63653.12.9e-22100.00hypothetical protein Csa_1G009080 [Cucumis sativus][more]
BLAST of CsaV3_1G002170 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G002170 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G002170 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LPC2|A0A0A0LPC2_CUCSA1.9e-22100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G009080 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G002170.1CsaV3_1G002170.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 12..39

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G002170Watermelon (Charleston Gray)cucwcgB003
CsaV3_1G002170Watermelon (Charleston Gray)cucwcgB006
CsaV3_1G002170Watermelon (Charleston Gray)cucwcgB017
CsaV3_1G002170Watermelon (Charleston Gray)cucwcgB070
CsaV3_1G002170Watermelon (Charleston Gray)cucwcgB088
CsaV3_1G002170Watermelon (97103) v1cucwmB004
CsaV3_1G002170Watermelon (97103) v1cucwmB044
CsaV3_1G002170Watermelon (97103) v1cucwmB061
CsaV3_1G002170Watermelon (97103) v1cucwmB105
CsaV3_1G002170Watermelon (97103) v2cucwmbB004
CsaV3_1G002170Watermelon (97103) v2cucwmbB059
CsaV3_1G002170Watermelon (97103) v2cucwmbB076
CsaV3_1G002170Watermelon (97103) v2cucwmbB094
CsaV3_1G002170Wax gourdcucwgoB010
CsaV3_1G002170Wax gourdcucwgoB061
CsaV3_1G002170Wax gourdcucwgoB076
CsaV3_1G002170Wax gourdcucwgoB103
CsaV3_1G002170Wax gourdcucwgoB125
CsaV3_1G002170Cucumber (Chinese Long) v3cuccucB002
CsaV3_1G002170Cucumber (Chinese Long) v3cuccucB035
CsaV3_1G002170Cucumber (Chinese Long) v3cuccucB039
CsaV3_1G002170Silver-seed gourdcarcucB0395
CsaV3_1G002170Silver-seed gourdcarcucB0530
CsaV3_1G002170Silver-seed gourdcarcucB0646
CsaV3_1G002170Silver-seed gourdcarcucB0718
CsaV3_1G002170Silver-seed gourdcarcucB1047
CsaV3_1G002170Melon (DHL92) v3.5.1cucmeB053
CsaV3_1G002170Cucumber (Gy14) v2cgybcucB002
CsaV3_1G002170Cucumber (Gy14) v2cgybcucB008
CsaV3_1G002170Cucumber (Gy14) v2cgybcucB204
CsaV3_1G002170Cucumber (Gy14) v2cgybcucB205
CsaV3_1G002170Cucumber (Gy14) v1cgycucB110
CsaV3_1G002170Cucumber (Gy14) v1cgycucB314
CsaV3_1G002170Cucumber (Gy14) v1cgycucB435
CsaV3_1G002170Cucumber (Gy14) v1cgycucB520
CsaV3_1G002170Cucurbita maxima (Rimu)cmacucB0058
CsaV3_1G002170Cucurbita maxima (Rimu)cmacucB0112
CsaV3_1G002170Cucurbita maxima (Rimu)cmacucB0239
CsaV3_1G002170Cucurbita maxima (Rimu)cmacucB0272
CsaV3_1G002170Cucurbita maxima (Rimu)cmacucB0478
CsaV3_1G002170Cucurbita maxima (Rimu)cmacucB0482
CsaV3_1G002170Cucurbita maxima (Rimu)cmacucB0814
CsaV3_1G002170Cucurbita moschata (Rifu)cmocucB0044
CsaV3_1G002170Cucurbita moschata (Rifu)cmocucB0091
CsaV3_1G002170Cucurbita moschata (Rifu)cmocucB0227
CsaV3_1G002170Cucurbita moschata (Rifu)cmocucB0261
CsaV3_1G002170Cucurbita moschata (Rifu)cmocucB0473
CsaV3_1G002170Cucurbita moschata (Rifu)cmocucB0798
CsaV3_1G002170Cucurbita pepo (Zucchini)cpecucB0023
CsaV3_1G002170Cucurbita pepo (Zucchini)cpecucB0027
CsaV3_1G002170Cucurbita pepo (Zucchini)cpecucB0442
CsaV3_1G002170Cucurbita pepo (Zucchini)cpecucB0470
CsaV3_1G002170Cucurbita pepo (Zucchini)cpecucB0638
CsaV3_1G002170Cucurbita pepo (Zucchini)cpecucB0740
CsaV3_1G002170Cucurbita pepo (Zucchini)cpecucB0814
CsaV3_1G002170Wild cucumber (PI 183967)cpicucB001
CsaV3_1G002170Wild cucumber (PI 183967)cpicucB012
CsaV3_1G002170Wild cucumber (PI 183967)cpicucB131
CsaV3_1G002170Wild cucumber (PI 183967)cpicucB254
CsaV3_1G002170Bottle gourd (USVL1VR-Ls)cuclsiB061
CsaV3_1G002170Bottle gourd (USVL1VR-Ls)cuclsiB036
CsaV3_1G002170Bottle gourd (USVL1VR-Ls)cuclsiB047
CsaV3_1G002170Bottle gourd (USVL1VR-Ls)cuclsiB081
CsaV3_1G002170Melon (DHL92) v3.5.1cucmeB005
CsaV3_1G002170Melon (DHL92) v3.5.1cucmeB015
CsaV3_1G002170Melon (DHL92) v3.6.1cucmedB005
CsaV3_1G002170Melon (DHL92) v3.6.1cucmedB013
CsaV3_1G002170Melon (DHL92) v3.6.1cucmedB064
CsaV3_1G002170Melon (DHL92) v3.6.1cucmedB050