CsaV3_1G002040 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G002040
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionProtein nuclear fusion defective 4
Locationchr1 : 1318885 .. 1319076 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCATAGGCTATATCATAATTGCTTCAGGCTTCACTGGGAATTTATACATAGGATCAGTGACTGTAGGAATCTGCTATGGAGCTCAAAACTCACTAATGCCTGCAGCAGTTACATCAGAGATATTTGGGATAAAGCATATGGACACCATTTACAACACCATTAATGTAGCATATCCCGATGGATCTTAG

mRNA sequence

ATGGGCATAGGCTATATCATAATTGCTTCAGGCTTCACTGGGAATTTATACATAGGATCAGTGACTGTAGGAATCTGCTATGGAGCTCAAAACTCACTAATGCCTGCAGCAGTTACATCAGAGATATTTGGGATAAAGCATATGGACACCATTTACAACACCATTAATGTAGCATATCCCGATGGATCTTAG

Coding sequence (CDS)

ATGGGCATAGGCTATATCATAATTGCTTCAGGCTTCACTGGGAATTTATACATAGGATCAGTGACTGTAGGAATCTGCTATGGAGCTCAAAACTCACTAATGCCTGCAGCAGTTACATCAGAGATATTTGGGATAAAGCATATGGACACCATTTACAACACCATTAATGTAGCATATCCCGATGGATCTTAG

Protein sequence

MGIGYIIIASGFTGNLYIGSVTVGICYGAQNSLMPAAVTSEIFGIKHMDTIYNTINVAYPDGS
Homology
[Close]
BLAST of CsaV3_1G002040 vs. NCBI nr
Match: KGN63640.1 (hypothetical protein Csa_1G008465 [Cucumis sativus])

HSP 1 Score: 129.0 bits (323), Expect = 5.6e-27
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0 

Query: 1  MGIGYIIIASGFTGNLYIGSVTVGICYGAQNSLMPAAVTSEIFGIKHMDTIYNTINVAYP 60
          MGIGYIIIASGFTGNLYIGSVTVGICYGAQNSLMPAAVTSEIFGIKHMDTIYNTINVAYP
Sbjct: 1  MGIGYIIIASGFTGNLYIGSVTVGICYGAQNSLMPAAVTSEIFGIKHMDTIYNTINVAYP 60

Query: 61 DGS 64
          DGS
Sbjct: 61 DGS 63

[Close]
BLAST of CsaV3_1G002040 vs. NCBI nr
Match: XP_022933362.1 (uncharacterized protein LOC111440723 [Cucurbita moschata])

HSP 1 Score: 94.0 bits (232), Expect = 2.0e-16
Identity = 47/63 (74.60%), Postives = 55/63 (87.30%), Query Frame = 0 

Query: 1   MGIGYIIIASGFTGNLYIGSVTVGICYGAQNSLMPAAVTSEIFGIKHMDTIYNTINVAYP 60
           M +G+IIIASGF+GNLY+GSV VGICYG+Q SLMP A+T+EIFGI+HM TIYNTI VA P
Sbjct: 384 MSVGHIIIASGFSGNLYLGSVIVGICYGSQWSLMP-AITAEIFGIRHMGTIYNTITVASP 443

Query: 61  DGS 64
            GS
Sbjct: 444 IGS 445

[Close]
BLAST of CsaV3_1G002040 vs. NCBI nr
Match: XP_018481036.1 (PREDICTED: uncharacterized protein LOC108852043 [Raphanus sativus])

HSP 1 Score: 92.0 bits (227), Expect = 7.7e-16
Identity = 45/63 (71.43%), Postives = 54/63 (85.71%), Query Frame = 0 

Query: 1   MGIGYIIIASGFTGNLYIGSVTVGICYGAQNSLMPAAVTSEIFGIKHMDTIYNTINVAYP 60
           M IG++IIASGF GNLY+GSV VGICYG+Q SLMP  +TSE+FG+KHM TIYNTI++A P
Sbjct: 393 MTIGHLIIASGFEGNLYVGSVIVGICYGSQWSLMP-TITSELFGVKHMGTIYNTISIASP 452

Query: 61  DGS 64
            GS
Sbjct: 453 MGS 454

[Close]
BLAST of CsaV3_1G002040 vs. NCBI nr
Match: XP_022973074.1 (uncharacterized protein LOC111471579 [Cucurbita maxima])

HSP 1 Score: 91.3 bits (225), Expect = 1.3e-15
Identity = 45/63 (71.43%), Postives = 55/63 (87.30%), Query Frame = 0 

Query: 1   MGIGYIIIASGFTGNLYIGSVTVGICYGAQNSLMPAAVTSEIFGIKHMDTIYNTINVAYP 60
           + +G+IIIASGF+GNLY+GS+ VGICYG+Q SLMP A+T+EIFGI+HM TIYNTI VA P
Sbjct: 98  ISVGHIIIASGFSGNLYLGSMIVGICYGSQWSLMP-AITAEIFGIRHMGTIYNTITVASP 157

Query: 61  DGS 64
            GS
Sbjct: 158 VGS 159

[Close]
BLAST of CsaV3_1G002040 vs. NCBI nr
Match: XP_010539949.1 (PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Tarenaya hassleriana])

HSP 1 Score: 90.9 bits (224), Expect = 1.7e-15
Identity = 45/63 (71.43%), Postives = 54/63 (85.71%), Query Frame = 0 

Query: 1   MGIGYIIIASGFTGNLYIGSVTVGICYGAQNSLMPAAVTSEIFGIKHMDTIYNTINVAYP 60
           M IG++IIASGF GNLYIGSV VGICYG+Q SLMP  +TSE+FG++HM TI+NTI+VA P
Sbjct: 408 MSIGHLIIASGFRGNLYIGSVIVGICYGSQWSLMP-TITSELFGVRHMGTIFNTISVASP 467

Query: 61  DGS 64
            GS
Sbjct: 468 VGS 469

[Close]
BLAST of CsaV3_1G002040 vs. TAIR10
Match: AT1G74780.1 (Nodulin-like / Major Facilitator Superfamily protein)

HSP 1 Score: 90.5 bits (223), Expect = 4.0e-19
Identity = 44/63 (69.84%), Postives = 54/63 (85.71%), Query Frame = 0 

Query: 1   MGIGYIIIASGFTGNLYIGSVTVGICYGAQNSLMPAAVTSEIFGIKHMDTIYNTINVAYP 60
           M IG++IIASGF GNLY+GSV VG+CYG+Q SLMP  +TSE+FGI+HM TI+NTI+VA P
Sbjct: 403 MSIGHLIIASGFQGNLYVGSVIVGVCYGSQWSLMP-TITSELFGIRHMGTIFNTISVASP 462

Query: 61  DGS 64
            GS
Sbjct: 463 IGS 464

[Close]
BLAST of CsaV3_1G002040 vs. TAIR10
Match: AT1G18940.1 (Nodulin-like / Major Facilitator Superfamily protein)

HSP 1 Score: 89.4 bits (220), Expect = 9.0e-19
Identity = 44/63 (69.84%), Postives = 53/63 (84.13%), Query Frame = 0 

Query: 1   MGIGYIIIASGFTGNLYIGSVTVGICYGAQNSLMPAAVTSEIFGIKHMDTIYNTINVAYP 60
           M IG++IIASGF GNLY GS+ VGICYG+Q SLMP  +TSE+FG+KHM TIYNTI++A P
Sbjct: 396 MTIGHLIIASGFQGNLYPGSIIVGICYGSQWSLMP-TITSELFGVKHMGTIYNTISIASP 455

Query: 61  DGS 64
            GS
Sbjct: 456 MGS 457

[Close]
BLAST of CsaV3_1G002040 vs. TAIR10
Match: AT2G34355.1 (Major facilitator superfamily protein)

HSP 1 Score: 78.2 bits (191), Expect = 2.1e-15
Identity = 40/63 (63.49%), Postives = 50/63 (79.37%), Query Frame = 0 

Query: 1   MGIGYIIIASGFTGNLYIGSVTVGICYGAQNSLMPAAVTSEIFGIKHMDTIYNTINVAYP 60
           M IG+II+ASG  G+LY GSV +G+ YG+Q SLMP  +TSEIFGI+HM TIY TI++A P
Sbjct: 394 MAIGHIIVASGVQGSLYAGSVLIGMAYGSQWSLMP-TITSEIFGIRHMGTIYFTISIAGP 453

Query: 61  DGS 64
            GS
Sbjct: 454 IGS 455

[Close]
BLAST of CsaV3_1G002040 vs. TAIR10
Match: AT2G34350.1 (Nodulin-like / Major Facilitator Superfamily protein)

HSP 1 Score: 76.3 bits (186), Expect = 7.9e-15
Identity = 38/63 (60.32%), Postives = 50/63 (79.37%), Query Frame = 0 

Query: 1   MGIGYIIIASGFTGNLYIGSVTVGICYGAQNSLMPAAVTSEIFGIKHMDTIYNTINVAYP 60
           M IG+I++ASG  G+LYIGS+ VG+ YG+Q SLMP  +TSEIFG+ HM TI+ TI++A P
Sbjct: 396 MAIGHIVMASGLLGSLYIGSLLVGLAYGSQWSLMP-TITSEIFGVLHMGTIFYTISIASP 455

Query: 61  DGS 64
            GS
Sbjct: 456 VGS 457

[Close]
BLAST of CsaV3_1G002040 vs. TAIR10
Match: AT2G39210.1 (Major facilitator superfamily protein)

HSP 1 Score: 57.4 bits (137), Expect = 3.8e-09
Identity = 29/60 (48.33%), Postives = 41/60 (68.33%), Query Frame = 0 

Query: 4   GYIIIASGFTGNLYIGSVTVGICYGAQNSLMPAAVTSEIFGIKHMDTIYNTINVAYPDGS 63
           G+++IA    G LY+ SV +G C+GAQ  L+  A+ SEIFG+K+  T+YN  +VA P GS
Sbjct: 427 GHLLIAFNVPGGLYVASVIIGFCFGAQWPLL-FAIISEIFGLKYYSTLYNFGSVASPIGS 485

[Close]
BLAST of CsaV3_1G002040 vs. TrEMBL
Match: tr|A0A0A0LP14|A0A0A0LP14_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G008465 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 3.7e-27
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0 

Query: 1  MGIGYIIIASGFTGNLYIGSVTVGICYGAQNSLMPAAVTSEIFGIKHMDTIYNTINVAYP 60
          MGIGYIIIASGFTGNLYIGSVTVGICYGAQNSLMPAAVTSEIFGIKHMDTIYNTINVAYP
Sbjct: 1  MGIGYIIIASGFTGNLYIGSVTVGICYGAQNSLMPAAVTSEIFGIKHMDTIYNTINVAYP 60

Query: 61 DGS 64
          DGS
Sbjct: 61 DGS 63

[Close]
BLAST of CsaV3_1G002040 vs. TrEMBL
Match: tr|Q84R22|Q84R22_ARATH (Uncharacterized protein At1g74780 OS=Arabidopsis thaliana OX=3702 GN=At1g74780 PE=2 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.5e-15
Identity = 44/63 (69.84%), Postives = 54/63 (85.71%), Query Frame = 0 

Query: 1   MGIGYIIIASGFTGNLYIGSVTVGICYGAQNSLMPAAVTSEIFGIKHMDTIYNTINVAYP 60
           M IG++IIASGF GNLY+GSV VG+CYG+Q SLMP  +TSE+FGI+HM TI+NTI+VA P
Sbjct: 403 MSIGHLIIASGFQGNLYVGSVIVGVCYGSQWSLMP-TITSELFGIRHMGTIFNTISVASP 462

Query: 61  DGS 64
            GS
Sbjct: 463 IGS 464

[Close]
BLAST of CsaV3_1G002040 vs. TrEMBL
Match: tr|Q9SSG2|Q9SSG2_ARATH (F25A4.25 protein OS=Arabidopsis thaliana OX=3702 GN=At1g74780 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.5e-15
Identity = 44/63 (69.84%), Postives = 54/63 (85.71%), Query Frame = 0 

Query: 1   MGIGYIIIASGFTGNLYIGSVTVGICYGAQNSLMPAAVTSEIFGIKHMDTIYNTINVAYP 60
           M IG++IIASGF GNLY+GSV VG+CYG+Q SLMP  +TSE+FGI+HM TI+NTI+VA P
Sbjct: 403 MSIGHLIIASGFQGNLYVGSVIVGVCYGSQWSLMP-TITSELFGIRHMGTIFNTISVASP 462

Query: 61  DGS 64
            GS
Sbjct: 463 IGS 464

[Close]
BLAST of CsaV3_1G002040 vs. TrEMBL
Match: tr|A0A178WDE9|A0A178WDE9_ARATH (Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=AXX17_At1g69160 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.5e-15
Identity = 44/63 (69.84%), Postives = 54/63 (85.71%), Query Frame = 0 

Query: 1   MGIGYIIIASGFTGNLYIGSVTVGICYGAQNSLMPAAVTSEIFGIKHMDTIYNTINVAYP 60
           M IG++IIASGF GNLY+GSV VG+CYG+Q SLMP  +TSE+FGI+HM TI+NTI+VA P
Sbjct: 403 MSIGHLIIASGFQGNLYVGSVIVGVCYGSQWSLMP-TITSELFGIRHMGTIFNTISVASP 462

Query: 61  DGS 64
            GS
Sbjct: 463 IGS 464

[Close]
BLAST of CsaV3_1G002040 vs. TrEMBL
Match: tr|A0A2P4N3H3|A0A2P4N3H3_QUESU (Protein nuclear fusion defective 4 OS=Quercus suber OX=58331 GN=CFP56_27534 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.5e-15
Identity = 43/63 (68.25%), Postives = 53/63 (84.13%), Query Frame = 0 

Query: 1   MGIGYIIIASGFTGNLYIGSVTVGICYGAQNSLMPAAVTSEIFGIKHMDTIYNTINVAYP 60
           M +G+I+IASGF GNLY+GSV VGICYG+Q SLMP  +TSE+FG++HM TI+NTI VA P
Sbjct: 383 MAVGHIVIASGFPGNLYVGSVLVGICYGSQWSLMP-TITSELFGVRHMGTIFNTIAVANP 442

Query: 61  DGS 64
            GS
Sbjct: 443 AGS 444

The following BLAST results are available for this feature:
BLAST of CsaV3_1G002040 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN63640.15.6e-27100.00hypothetical protein Csa_1G008465 [Cucumis sativus][more]
XP_022933362.12.0e-1674.60uncharacterized protein LOC111440723 [Cucurbita moschata][more]
XP_018481036.17.7e-1671.43PREDICTED: uncharacterized protein LOC108852043 [Raphanus sativus][more]
XP_022973074.11.3e-1571.43uncharacterized protein LOC111471579 [Cucurbita maxima][more]
XP_010539949.11.7e-1571.43PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Tarenaya hassleriana][more]
BLAST of CsaV3_1G002040 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G74780.14.0e-1969.84Nodulin-like / Major Facilitator Superfamily protein[more]
AT1G18940.19.0e-1969.84Nodulin-like / Major Facilitator Superfamily protein[more]
AT2G34355.12.1e-1563.49Major facilitator superfamily protein[more]
AT2G34350.17.9e-1560.32Nodulin-like / Major Facilitator Superfamily protein[more]
AT2G39210.13.8e-0948.33Major facilitator superfamily protein[more]
BLAST of CsaV3_1G002040 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G002040 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LP14|A0A0A0LP14_CUCSA3.7e-27100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G008465 PE=4 SV=1[more]
tr|Q84R22|Q84R22_ARATH1.5e-1569.84Uncharacterized protein At1g74780 OS=Arabidopsis thaliana OX=3702 GN=At1g74780 P... [more]
tr|Q9SSG2|Q9SSG2_ARATH1.5e-1569.84F25A4.25 protein OS=Arabidopsis thaliana OX=3702 GN=At1g74780 PE=4 SV=1[more]
tr|A0A178WDE9|A0A178WDE9_ARATH1.5e-1569.84Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=AXX17_At1g69160 PE=4 ... [more]
tr|A0A2P4N3H3|A0A2P4N3H3_QUESU2.5e-1568.25Protein nuclear fusion defective 4 OS=Quercus suber OX=58331 GN=CFP56_27534 PE=4... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G002040.1CsaV3_1G002040.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR21576:SF33F14D16.8-RELATEDcoord: 1..63
NoneNo IPR availablePANTHERPTHR21576UNCHARACTERIZED NODULIN-LIKE PROTEINcoord: 1..63

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G002040Cucumber (Chinese Long) v3cuccucB002
CsaV3_1G002040Cucumber (Chinese Long) v3cuccucB035
CsaV3_1G002040Silver-seed gourdcarcucB0395
CsaV3_1G002040Silver-seed gourdcarcucB0530
CsaV3_1G002040Silver-seed gourdcarcucB0646
CsaV3_1G002040Silver-seed gourdcarcucB1047
CsaV3_1G002040Melon (DHL92) v3.5.1cucmeB053
CsaV3_1G002040Cucumber (Gy14) v2cgybcucB002
CsaV3_1G002040Cucumber (Gy14) v2cgybcucB008
CsaV3_1G002040Cucumber (Gy14) v1cgycucB110
CsaV3_1G002040Cucumber (Gy14) v1cgycucB314
CsaV3_1G002040Cucumber (Gy14) v1cgycucB435
CsaV3_1G002040Cucumber (Gy14) v1cgycucB520
CsaV3_1G002040Cucurbita maxima (Rimu)cmacucB0058
CsaV3_1G002040Cucurbita maxima (Rimu)cmacucB0112
CsaV3_1G002040Cucurbita maxima (Rimu)cmacucB0239
CsaV3_1G002040Cucurbita maxima (Rimu)cmacucB0272
CsaV3_1G002040Cucurbita maxima (Rimu)cmacucB0478
CsaV3_1G002040Cucurbita maxima (Rimu)cmacucB0814
CsaV3_1G002040Cucurbita moschata (Rifu)cmocucB0044
CsaV3_1G002040Cucurbita moschata (Rifu)cmocucB0091
CsaV3_1G002040Cucurbita moschata (Rifu)cmocucB0094
CsaV3_1G002040Cucurbita moschata (Rifu)cmocucB0227
CsaV3_1G002040Cucurbita moschata (Rifu)cmocucB0261
CsaV3_1G002040Cucurbita moschata (Rifu)cmocucB0468
CsaV3_1G002040Cucurbita moschata (Rifu)cmocucB0798
CsaV3_1G002040Cucurbita pepo (Zucchini)cpecucB0023
CsaV3_1G002040Cucurbita pepo (Zucchini)cpecucB0442
CsaV3_1G002040Cucurbita pepo (Zucchini)cpecucB0470
CsaV3_1G002040Cucurbita pepo (Zucchini)cpecucB0638
CsaV3_1G002040Cucurbita pepo (Zucchini)cpecucB0740
CsaV3_1G002040Cucurbita pepo (Zucchini)cpecucB0814
CsaV3_1G002040Wild cucumber (PI 183967)cpicucB001
CsaV3_1G002040Wild cucumber (PI 183967)cpicucB012
CsaV3_1G002040Wild cucumber (PI 183967)cpicucB131
CsaV3_1G002040Wild cucumber (PI 183967)cpicucB254
CsaV3_1G002040Bottle gourd (USVL1VR-Ls)cuclsiB036
CsaV3_1G002040Bottle gourd (USVL1VR-Ls)cuclsiB081
CsaV3_1G002040Melon (DHL92) v3.5.1cucmeB005
CsaV3_1G002040Melon (DHL92) v3.5.1cucmeB015
CsaV3_1G002040Melon (DHL92) v3.6.1cucmedB005
CsaV3_1G002040Melon (DHL92) v3.6.1cucmedB013
CsaV3_1G002040Melon (DHL92) v3.6.1cucmedB064
CsaV3_1G002040Melon (DHL92) v3.6.1cucmedB050
CsaV3_1G002040Watermelon (Charleston Gray)cucwcgB006
CsaV3_1G002040Watermelon (Charleston Gray)cucwcgB017
CsaV3_1G002040Watermelon (Charleston Gray)cucwcgB070
CsaV3_1G002040Watermelon (Charleston Gray)cucwcgB088
CsaV3_1G002040Watermelon (97103) v1cucwmB044
CsaV3_1G002040Watermelon (97103) v1cucwmB061
CsaV3_1G002040Watermelon (97103) v1cucwmB105
CsaV3_1G002040Watermelon (97103) v2cucwmbB004
CsaV3_1G002040Watermelon (97103) v2cucwmbB059
CsaV3_1G002040Watermelon (97103) v2cucwmbB076
CsaV3_1G002040Wax gourdcucwgoB061
CsaV3_1G002040Wax gourdcucwgoB076
CsaV3_1G002040Wax gourdcucwgoB103