CsaV3_1G001370 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G001370
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 817423 .. 820479 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGGCTTCTGCACCTCAAATTTCCATGGTTACATTTCATTCAGCTGATGGCTTGAATTGAATTCAAGCAGTCAGTAGCTTTCTAAAGGAAGAGGCAAGTGATCTTTAACTTCATCCACTTTCATAAAGTCAATTACACGAGTCTCTATTCACAAAAATAACCTGAAATTCATTCATACTCCACACCTGGAGCCACACCCTTTTTTCTTCAACTCTATCTACGATCTCATAGATCTGGTCTGTTTGGATTCTTTCCCTTTTCCCTTTTTGCTGTAGAGATTGGATTAGCTTCTTGCATTTTAGATTCCTACTTTATGGGTTTTCGATATTTTTAGGGGTTCTTCTAATTGGTAGTTTAAATTGTAGCTGACGGTAGAGTTTCTTTTCTTGGTGATTTGTTTTCTGTTAAAATTTTCAGTATGGAAGAACCCAATGAAGCTGGACATGAGAGTACTACAGATAAGTCAAATTATTGATATGGGTATCCAAGTTCATTCATTACTGAACACCAATGGTTTTACGTTCCTTCAGGTCAAGTTAGGATATGAAATCTAGTCGGAGAACATTTTATAACAACTTGGGAAAACAATGTAGATAACCATTGTCTTTTTTTCTAGAAGATGGAAATAAGCTTGTTTGTTGAAATGATACTAACACTCTAGAGATAATAAAGGAAACAAAACAGAAATAACCAACAAACAAAATCAAGTATGTTGCAGATACTTAGTAAGAGATTACAAGCTATCTATTTGAAGAAGAAAATAAAATGACTTCAATTTAAACTGATGTCTTGAATTGAATAGTCTATAAAAGTTTGAAAAGACGGCACGGAGAGAAGGTTTTAACTTGAGTAATCTCTTAAGAAACTTTTTTGCTCGCGGTAGTATCTCTATGGTTAGCATTTGATGGAGCTTTGTTTACATTTTCACTCGGATATACGAAATTGCATTTGTGGGGTTGATCGCAATAAAAATGGACGTTTACTGTTAGAATTTGACAGAAATGGAATGTTGATTACTATTATGTAATGTAACATGCTCATAAGGATGCATAATGCCTTCCCACTAGATTTTGGAGATGTAACTAGACATAAGGCATATGGGTAATGTGTGTAATGCTGATTAATGCCTACAGACGAATGTATATTCTATTTCTTAAACTTATATATATTCTTCTTATGGATGCTTCCAAGAAGGGGACGTGGCCCGAACTTCAATACTTAGTTGTGGCTTTAAATCTTCAAATTGGTAAAGCTCATCTCATTCTTCTACCATGGAAGGACCTTGAAGGCATAAATAGACTATGGTCGCCCTTGTAGTCCTAGTAAACTTGTGAAGGAATCTTTAAGATAGAATATATGTTGTTCATTCGTGAAGCTTCTATGTTATCATTTCTCATTGAATACTGCGAAAATCTCTACCATGTTATCCTTTAGAAAAACTAATGGATTCTTGTGAATGTCTATTTCTTTTCTTGCATTTTAAGGGATTCATTACAATTACAACATCCTCCAGCCTTTTATCATGGAGTCAGAGAATGAAGTTGAAGCCATGTATAGAGACTTCGAATTTTCTTGGGAAAGCTGATAGGTGTATGCTATTAAACCAAAAGATCCAATTAAGTGCCCTTTAGTTCTGATATGAATACAAGTTGCTGGTAAACTCATGAAATCAACTTGTGCATGCCTTTTGAACTAGATTTAGGCCACTGATCAGAGAGAATAGCTAATGTAGATACACTATAACAATTTTGAAATGTGGATAAAGATATGACGGTGTCGACTAATTTCATTCCATGTACACATATTCATTTTTTGGACAAAAAGTTGTGTATTGAATGAACACATCCTAAATTTTGCCTGTAAAGATATATATTGTAAAAAGGGTTGAGTGATTTAAAGAAAAATATTTTAAAACTGTTATTTTAGTTTGTAGCTACACTTGGTATGAAAATATTTTAAATATTTGTGAATGAATATTTATATATATATATATATGCTGACATATATAAAAGGTGGACATAAGTTTTTTTTTTTTTTTTAAAAAGAACTAATTTCTCAAATCCTTTATTTATTTATTCTTTTTCCCTCCATTCCCTCGTTTCTCTCACACGCCGCCCTTCTTTCTTCTCACGAACGTGAACGGCCCTTTTCCCTTCCGATTTTCTTCTCACCGGAATTTTCTTATCGCCGGACGCCCCCCCAACCGCCGGACTTCTTCTTGTCGATCGCTGCCACCAAATTTCTTCTTCGCGGAACGCCCCACAGGATTTCTTCTTGTCGAAAGCCGGTTTCACCCTAAACCCGTTCACTTCAACGAACGGGTCGACCACGTTCTGTCGCCCCAAGCTCCATTAGGTGCTCTTACTTGTTACCACTTAATCTTTGCTTACTGTTTTCTTTGGATTACTAAAGAGAAGGAAAACTCGTGCATCTCTTCTTTATCCTACTACCTGAGGATACCTTTTGCTATTACTATTAGTTTGAATCACAAGTTTGGCTAGGCAATTTTTTTAGATAGAAAACCAAGGAATAAAGTGTTAGTAGTAGGGTTTTACTGTCATTTACTTGCAACTTTCACAAATTCTATAAAATGTCCTTTTGAGTTTTGAATGTTTCATTTTGTGGGGATTAATTGGAGATCTCTTGGTAATAATAATAGGCTGTCAATAAGAGCATAGTGATAATTAACTAAAGTGTCAACATTGATCATTTTTAGAAATTTTATGTTTGGTTTAGAGTTTTTGTCTTTCGCCCTCAAACGTAGACTCTCTCGAATTCAGTCCAATGATGAATTTTGCAGGCCTCTATCTGGCGAAGCATCCTAAGATTCACAGGTGACCCACTGCCGTTTGTTGCTAATACCTTCATTCGAGTCATCAAGTAAGTAACATTTACCTTCTCTCTCTTTCTTCTTAGTCTTTTATCTCTGTTGATGCTAAAATCCCACTCCCATTATGAACAACCCAAAATTGTGACAACATTGTCAAAACCTTCTTCTGTGTTTGATTTCCAGCCAGTTTTGTGTGCTTCACCATATTCTTCCTGAAAAGTAG

mRNA sequence

ATGGGTGGCTTCTGCACCTCAAATTTCCATGTATGGAAGAACCCAATGAAGCTGGACATGAGAGTACTACAGATAAGTCAAATTATTGATATGGGATTTCTTCTTGTCGAAAGCCGGTTTCACCCTAAACCCGTTCACTTCAACGAACGGGTCGACCACGTTCTGTCGCCCCAAGCTCCATTAGATCTCTTGGCCTCTATCTGGCGAAGCATCCTAAGATTCACAGGTGACCCACTGCCGTTTGTTGCTAATACCTTCATTCGAGTCATCAACCAGTTTTGTGTGCTTCACCATATTCTTCCTGAAAAGTAG

Coding sequence (CDS)

ATGGGTGGCTTCTGCACCTCAAATTTCCATGTATGGAAGAACCCAATGAAGCTGGACATGAGAGTACTACAGATAAGTCAAATTATTGATATGGGATTTCTTCTTGTCGAAAGCCGGTTTCACCCTAAACCCGTTCACTTCAACGAACGGGTCGACCACGTTCTGTCGCCCCAAGCTCCATTAGATCTCTTGGCCTCTATCTGGCGAAGCATCCTAAGATTCACAGGTGACCCACTGCCGTTTGTTGCTAATACCTTCATTCGAGTCATCAACCAGTTTTGTGTGCTTCACCATATTCTTCCTGAAAAGTAG

Protein sequence

MGGFCTSNFHVWKNPMKLDMRVLQISQIIDMGFLLVESRFHPKPVHFNERVDHVLSPQAPLDLLASIWRSILRFTGDPLPFVANTFIRVINQFCVLHHILPEK
Homology
[Close]
BLAST of CsaV3_1G001370 vs. NCBI nr
Match: KGN63565.1 (hypothetical protein Csa_1G004320 [Cucumis sativus])

HSP 1 Score: 222.6 bits (566), Expect = 6.1e-55
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MGGFCTSNFHVWKNPMKLDMRVLQISQIIDMGFLLVESRFHPKPVHFNERVDHVLSPQAP 60
           MGGFCTSNFHVWKNPMKLDMRVLQISQIIDMGFLLVESRFHPKPVHFNERVDHVLSPQAP
Sbjct: 1   MGGFCTSNFHVWKNPMKLDMRVLQISQIIDMGFLLVESRFHPKPVHFNERVDHVLSPQAP 60

Query: 61  LDLLASIWRSILRFTGDPLPFVANTFIRVINQFCVLHHILPEK 104
           LDLLASIWRSILRFTGDPLPFVANTFIRVINQFCVLHHILPEK
Sbjct: 61  LDLLASIWRSILRFTGDPLPFVANTFIRVINQFCVLHHILPEK 103

[Close]
BLAST of CsaV3_1G001370 vs. TrEMBL
Match: tr|A0A0A0LNV9|A0A0A0LNV9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G004320 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 4.0e-55
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MGGFCTSNFHVWKNPMKLDMRVLQISQIIDMGFLLVESRFHPKPVHFNERVDHVLSPQAP 60
           MGGFCTSNFHVWKNPMKLDMRVLQISQIIDMGFLLVESRFHPKPVHFNERVDHVLSPQAP
Sbjct: 1   MGGFCTSNFHVWKNPMKLDMRVLQISQIIDMGFLLVESRFHPKPVHFNERVDHVLSPQAP 60

Query: 61  LDLLASIWRSILRFTGDPLPFVANTFIRVINQFCVLHHILPEK 104
           LDLLASIWRSILRFTGDPLPFVANTFIRVINQFCVLHHILPEK
Sbjct: 61  LDLLASIWRSILRFTGDPLPFVANTFIRVINQFCVLHHILPEK 103

The following BLAST results are available for this feature:
BLAST of CsaV3_1G001370 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN63565.16.1e-55100.00hypothetical protein Csa_1G004320 [Cucumis sativus][more]
BLAST of CsaV3_1G001370 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G001370 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G001370 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LNV9|A0A0A0LNV9_CUCSA4.0e-55100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G004320 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G001370.1CsaV3_1G001370.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G001370Cucumber (Chinese Long) v3cuccucB002
CsaV3_1G001370Silver-seed gourdcarcucB0395
CsaV3_1G001370Silver-seed gourdcarcucB0530
CsaV3_1G001370Silver-seed gourdcarcucB1047
CsaV3_1G001370Silver-seed gourdcarcucB1095
CsaV3_1G001370Melon (DHL92) v3.5.1cucmeB053
CsaV3_1G001370Cucumber (Gy14) v2cgybcucB002
CsaV3_1G001370Cucumber (Gy14) v2cgybcucB008
CsaV3_1G001370Cucumber (Gy14) v2cgybcucB106
CsaV3_1G001370Cucumber (Gy14) v1cgycucB110
CsaV3_1G001370Cucumber (Gy14) v1cgycucB314
CsaV3_1G001370Cucumber (Gy14) v1cgycucB520
CsaV3_1G001370Cucurbita maxima (Rimu)cmacucB0058
CsaV3_1G001370Cucurbita maxima (Rimu)cmacucB0100
CsaV3_1G001370Cucurbita maxima (Rimu)cmacucB0117
CsaV3_1G001370Cucurbita maxima (Rimu)cmacucB0239
CsaV3_1G001370Cucurbita maxima (Rimu)cmacucB0478
CsaV3_1G001370Cucurbita moschata (Rifu)cmocucB0044
CsaV3_1G001370Cucurbita moschata (Rifu)cmocucB0091
CsaV3_1G001370Cucurbita moschata (Rifu)cmocucB0094
CsaV3_1G001370Cucurbita moschata (Rifu)cmocucB0227
CsaV3_1G001370Cucurbita moschata (Rifu)cmocucB0261
CsaV3_1G001370Cucurbita moschata (Rifu)cmocucB0468
CsaV3_1G001370Cucurbita moschata (Rifu)cmocucB0801
CsaV3_1G001370Cucurbita pepo (Zucchini)cpecucB0023
CsaV3_1G001370Cucurbita pepo (Zucchini)cpecucB0442
CsaV3_1G001370Cucurbita pepo (Zucchini)cpecucB0473
CsaV3_1G001370Cucurbita pepo (Zucchini)cpecucB0638
CsaV3_1G001370Cucurbita pepo (Zucchini)cpecucB0814
CsaV3_1G001370Wild cucumber (PI 183967)cpicucB001
CsaV3_1G001370Wild cucumber (PI 183967)cpicucB012
CsaV3_1G001370Wild cucumber (PI 183967)cpicucB131
CsaV3_1G001370Bottle gourd (USVL1VR-Ls)cuclsiB064
CsaV3_1G001370Bottle gourd (USVL1VR-Ls)cuclsiB036
CsaV3_1G001370Bottle gourd (USVL1VR-Ls)cuclsiB049
CsaV3_1G001370Bottle gourd (USVL1VR-Ls)cuclsiB081
CsaV3_1G001370Melon (DHL92) v3.5.1cucmeB015
CsaV3_1G001370Melon (DHL92) v3.6.1cucmedB013
CsaV3_1G001370Melon (DHL92) v3.6.1cucmedB050
CsaV3_1G001370Watermelon (Charleston Gray)cucwcgB002
CsaV3_1G001370Watermelon (Charleston Gray)cucwcgB006
CsaV3_1G001370Watermelon (Charleston Gray)cucwcgB028
CsaV3_1G001370Watermelon (Charleston Gray)cucwcgB070
CsaV3_1G001370Watermelon (Charleston Gray)cucwcgB088
CsaV3_1G001370Watermelon (Charleston Gray)cucwcgB100
CsaV3_1G001370Watermelon (97103) v1cucwmB003
CsaV3_1G001370Watermelon (97103) v1cucwmB007
CsaV3_1G001370Watermelon (97103) v1cucwmB044
CsaV3_1G001370Watermelon (97103) v1cucwmB105
CsaV3_1G001370Watermelon (97103) v2cucwmbB012
CsaV3_1G001370Watermelon (97103) v2cucwmbB076
CsaV3_1G001370Watermelon (97103) v2cucwmbB093
CsaV3_1G001370Wax gourdcucwgoB009
CsaV3_1G001370Wax gourdcucwgoB060
CsaV3_1G001370Wax gourdcucwgoB103