CsaV3_1G001010 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G001010
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 590799 .. 591348 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGTTCCGCCGCACACGGTGGCCGTTACTCCCCGGCAACGTGTCCTTCATTCATTCAGTAGTGTTGTAATTACCACTTTCTTGTTTAAATCTTTCTCTATGTATGCCTTGATTTGCGTTGCGTTGCGTTGCGATTACCCTCTGGCGTTAGAGGACGAATCATCTGCACCGCCGCAGCCTCCCCCATTCTCGTCCGACACGTATTCAAAACTTCATCGCGCCTCGTTTCATACGTGTGCCTCCCATGTAACACGTGTGAGTTCTCCATTTCTCTTTTTCTTTTCTACTTTATTTTTAATTTCTCTAACGGCCGATTTGAATTTGCAGTGTTTCTCGTGGAGGGCTGAGTATGGGATTATTCCGATTCCGGGAGCGGTTGGAGTGTATAATATAAACAAATAAATGATCGGAAATTACGACGGAGGGTAAAACGGGGTAATGAATTTTGGGGGAGAAATTGGAAGGGGCGATGTGGGCTGTGGTTGGGGAATTGCCTTTGGATGAAATTACGGGAGTGCCCTTTTTGGGTTTTGGAGATCAATCATGA

mRNA sequence

ATGGCGGTTCCGCCGCACACGGTGGCCGTTACTCCCCGGCAACGTGTCCTTCATTCATTCAGTAGTGTTGTAATTACCACTTTCTTGTTTAAATCTTTCTCTATGTATGCCTTGATTTGCGTTGCGTTGCGTTGCGATTACCCTCTGGCGTTAGAGGACGAATCATCTGCACCGCCGCAGCCTCCCCCATTCTCGTCCGACACGTATTCAAAACTTCATCGCGCCTCGTTTCATACGTGTGCCTCCCATTGTTTCTCGTGGAGGGCTGAGTATGGGATTATTCCGATTCCGGGAGCGAAATTGGAAGGGGCGATGTGGGCTGTGGTTGGGGAATTGCCTTTGGATGAAATTACGGGAGTGCCCTTTTTGGGTTTTGGAGATCAATCATGA

Coding sequence (CDS)

ATGGCGGTTCCGCCGCACACGGTGGCCGTTACTCCCCGGCAACGTGTCCTTCATTCATTCAGTAGTGTTGTAATTACCACTTTCTTGTTTAAATCTTTCTCTATGTATGCCTTGATTTGCGTTGCGTTGCGTTGCGATTACCCTCTGGCGTTAGAGGACGAATCATCTGCACCGCCGCAGCCTCCCCCATTCTCGTCCGACACGTATTCAAAACTTCATCGCGCCTCGTTTCATACGTGTGCCTCCCATTGTTTCTCGTGGAGGGCTGAGTATGGGATTATTCCGATTCCGGGAGCGAAATTGGAAGGGGCGATGTGGGCTGTGGTTGGGGAATTGCCTTTGGATGAAATTACGGGAGTGCCCTTTTTGGGTTTTGGAGATCAATCATGA

Protein sequence

MAVPPHTVAVTPRQRVLHSFSSVVITTFLFKSFSMYALICVALRCDYPLALEDESSAPPQPPPFSSDTYSKLHRASFHTCASHCFSWRAEYGIIPIPGAKLEGAMWAVVGELPLDEITGVPFLGFGDQS
Homology
[Close]
BLAST of CsaV3_1G001010 vs. NCBI nr
Match: KGN63526.1 (hypothetical protein Csa_1G002950 [Cucumis sativus])

HSP 1 Score: 268.5 bits (685), Expect = 1.2e-68
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0 

Query: 1   MAVPPHTVAVTPRQRVLHSFSSVVITTFLFKSFSMYALICVALRCDYPLALEDESSAPPQ 60
           MAVPPHTVAVTPRQRVLHSFSSVVITTFLFKSFSMYALICVALRCDYPLALEDESSAPPQ
Sbjct: 1   MAVPPHTVAVTPRQRVLHSFSSVVITTFLFKSFSMYALICVALRCDYPLALEDESSAPPQ 60

Query: 61  PPPFSSDTYSKLHRASFHTCASHCFSWRAEYGIIPIPGAKLEGAMWAVVGELPLDEITGV 120
           PPPFSSDTYSKLHRASFHTCASHCFSWRAEYGIIPIPGAKLEGAMWAVVGELPLDEITGV
Sbjct: 61  PPPFSSDTYSKLHRASFHTCASHCFSWRAEYGIIPIPGAKLEGAMWAVVGELPLDEITGV 120

Query: 121 PFLGFGDQS 130
           PFLGFGDQS
Sbjct: 121 PFLGFGDQS 129

[Close]
BLAST of CsaV3_1G001010 vs. TrEMBL
Match: tr|A0A0A0LU65|A0A0A0LU65_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G002950 PE=4 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 8.0e-69
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0 

Query: 1   MAVPPHTVAVTPRQRVLHSFSSVVITTFLFKSFSMYALICVALRCDYPLALEDESSAPPQ 60
           MAVPPHTVAVTPRQRVLHSFSSVVITTFLFKSFSMYALICVALRCDYPLALEDESSAPPQ
Sbjct: 1   MAVPPHTVAVTPRQRVLHSFSSVVITTFLFKSFSMYALICVALRCDYPLALEDESSAPPQ 60

Query: 61  PPPFSSDTYSKLHRASFHTCASHCFSWRAEYGIIPIPGAKLEGAMWAVVGELPLDEITGV 120
           PPPFSSDTYSKLHRASFHTCASHCFSWRAEYGIIPIPGAKLEGAMWAVVGELPLDEITGV
Sbjct: 61  PPPFSSDTYSKLHRASFHTCASHCFSWRAEYGIIPIPGAKLEGAMWAVVGELPLDEITGV 120

Query: 121 PFLGFGDQS 130
           PFLGFGDQS
Sbjct: 121 PFLGFGDQS 129

The following BLAST results are available for this feature:
BLAST of CsaV3_1G001010 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN63526.11.2e-68100.00hypothetical protein Csa_1G002950 [Cucumis sativus][more]
BLAST of CsaV3_1G001010 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G001010 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G001010 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LU65|A0A0A0LU65_CUCSA8.0e-69100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G002950 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G001010.1CsaV3_1G001010.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G001010Silver-seed gourdcarcucB0395
CsaV3_1G001010Silver-seed gourdcarcucB0398
CsaV3_1G001010Silver-seed gourdcarcucB0466
CsaV3_1G001010Silver-seed gourdcarcucB1095
CsaV3_1G001010Melon (DHL92) v3.5.1cucmeB053
CsaV3_1G001010Cucumber (Gy14) v2cgybcucB002
CsaV3_1G001010Cucumber (Gy14) v1cgycucB314
CsaV3_1G001010Cucurbita maxima (Rimu)cmacucB0058
CsaV3_1G001010Cucurbita maxima (Rimu)cmacucB0100
CsaV3_1G001010Cucurbita maxima (Rimu)cmacucB0117
CsaV3_1G001010Cucurbita maxima (Rimu)cmacucB0126
CsaV3_1G001010Cucurbita maxima (Rimu)cmacucB0273
CsaV3_1G001010Cucurbita moschata (Rifu)cmocucB0044
CsaV3_1G001010Cucurbita moschata (Rifu)cmocucB0091
CsaV3_1G001010Cucurbita moschata (Rifu)cmocucB0094
CsaV3_1G001010Cucurbita moschata (Rifu)cmocucB0261
CsaV3_1G001010Cucurbita moschata (Rifu)cmocucB0801
CsaV3_1G001010Cucurbita pepo (Zucchini)cpecucB0441
CsaV3_1G001010Cucurbita pepo (Zucchini)cpecucB0442
CsaV3_1G001010Cucurbita pepo (Zucchini)cpecucB0473
CsaV3_1G001010Cucurbita pepo (Zucchini)cpecucB0739
CsaV3_1G001010Cucurbita pepo (Zucchini)cpecucB0804
CsaV3_1G001010Cucurbita pepo (Zucchini)cpecucB0805
CsaV3_1G001010Cucurbita pepo (Zucchini)cpecucB0814
CsaV3_1G001010Wild cucumber (PI 183967)cpicucB001
CsaV3_1G001010Wild cucumber (PI 183967)cpicucB126
CsaV3_1G001010Bottle gourd (USVL1VR-Ls)cuclsiB081
CsaV3_1G001010Melon (DHL92) v3.6.1cucmedB050
CsaV3_1G001010Watermelon (Charleston Gray)cucwcgB002
CsaV3_1G001010Watermelon (Charleston Gray)cucwcgB082
CsaV3_1G001010Watermelon (Charleston Gray)cucwcgB088
CsaV3_1G001010Watermelon (Charleston Gray)cucwcgB100
CsaV3_1G001010Watermelon (97103) v1cucwmB003
CsaV3_1G001010Watermelon (97103) v1cucwmB103
CsaV3_1G001010Watermelon (97103) v1cucwmB105
CsaV3_1G001010Watermelon (97103) v2cucwmbB070
CsaV3_1G001010Watermelon (97103) v2cucwmbB076
CsaV3_1G001010Watermelon (97103) v2cucwmbB093
CsaV3_1G001010Wax gourdcucwgoB009
CsaV3_1G001010Wax gourdcucwgoB086
CsaV3_1G001010Wax gourdcucwgoB123
CsaV3_1G001010Cucumber (Chinese Long) v3cuccucB017