CsaV3_1G000980 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G000980
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionE3 ubiquitin-protein ligase RGLG2-like
Locationchr1 : 573151 .. 574376 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTCGAAAGAATTATCCACTTCTGTAAGTTCTCTTCTTCATTGGATTCTGTTATTTGATGAAATTTTGGTGATGGGAATTTCTTGTTTGCTGTGATTTGTGAAGAAATGTGGATGAAACTCTGAATGTGCCTCTTGTGGTCGACTTTGCAACCCTTTTTGTCGGTGGATGATTGAATTCTCTCGGATTCTTTCTATTTTCTTTTTTTCTGTAATTTCATCCATATCTTCGATCCTACATATTAGCATTGTTCTTAGGAGATTTGGGTTTGTTTTGTCTTGGGTGGGGATTGAATTGTCTTGTAGAACTTTGGGTTTTCTTTTTGAAATCTTTGCATGCACGGACTCGAACCAAACAGAAGTCTGAATTTGCCTGTGTTTTGTACAAAGATACGAAGCTCTCATAGAGAAGATTTGGGGTTGTTTCGTTTGGGTTCTCTCTGATCTTACAACTTATTCATTTCATTTGTTTTGTGTAATGTAGTTTCCTCTCTATATGTAAAAACACTGAGATTTTTCCACTACATGTTGTAGAGCTCTTGTGAAGTGATGGGTGGAAAAAGTTCTAAGCATAGAAGCTCAAGACGGAATTCGTCTAGTCGGTCGAACTCACAGCAGTGGAGTCATTATGGTTATCCGGAGTCGCCATATACTCAATCGAGAAGCACGCCGCAGTATGAGTATGCACCTCCAACTCCTAGCTATGGTGGAACTCAAGCCCCTGAGACAAGAAAGAGGCTGGAGAGGAAGTATTCAAGGATAGATGATAACTATAACAGTCTAGATCAGGTCTTGCTGCAATCATATTGCAAGACTTTATTGGCACTCCATAGTCAATATGAAACTTACTTCTACGCTCTGATACTCTTCATAGGTTACTGAAGCATTAGCTCGTGCTGGCCTGGAGTCCTCGAATCTTATCGTTGGTATAGATTTCACAAAGAGCAATGAGTGGACAGGTTCAGCCTTGCTTTGGCCATTAGATGTTCTTGTATCGGTTTCCTTAATAGCATGTGCACATGTTAACTATGGCCTTTGTATAGGTGCAAGATCATTCAACCGTAGAAGTTTGCATCATATTGGAGAAGAGCAAAATCCCTATGAACAAGCAATAGCAATTATTGGCCAAACATTATCTTCCTTTGATGAGGATAATATGATTCCTTGCTTCGGTTTTGGAGATGGTATTTCTTCAAAAGAATTGTGTAATCGATCCATTTTTCGCTGA

mRNA sequence

ATGGGTGGAAAAAGTTCTAAGCATAGAAGCTCAAGACGGAATTCGTCTAGTCGGTCGAACTCACAGCAGTGGAGTCATTATGGTTATCCGGAGTCGCCATATACTCAATCGAGAAGCACGCCGCAGTATGAGTATGCACCTCCAACTCCTAGCTATGGTGGAACTCAAGCCCCTGAGACAAGAAAGAGGCTGGAGAGGAAGTATTCAAGGATAGATGATAACTATAACAGTCTAGATCAGGTTACTGAAGCATTAGCTCGTGCTGGCCTGGAGTCCTCGAATCTTATCGTTGGTATAGATTTCACAAAGAGCAATGAGTGGACAGGTTCAGCCTTGCTTTGGCCATTAGATGTTCTTGTATCGGTTTCCTTAATAGCATGTGCACATGTTAACTATGGCCTTTGTATAGGTGCAAGATCATTCAACCGTAGAAGTTTGCATCATATTGGAGAAGAGCAAAATCCCTATGAACAAGCAATAGCAATTATTGGCCAAACATTATCTTCCTTTGATGAGGATAATATGATTCCTTGCTTCGGTTTTGGAGATGGTATTTCTTCAAAAGAATTGTGTAATCGATCCATTTTTCGCTGA

Coding sequence (CDS)

ATGGGTGGAAAAAGTTCTAAGCATAGAAGCTCAAGACGGAATTCGTCTAGTCGGTCGAACTCACAGCAGTGGAGTCATTATGGTTATCCGGAGTCGCCATATACTCAATCGAGAAGCACGCCGCAGTATGAGTATGCACCTCCAACTCCTAGCTATGGTGGAACTCAAGCCCCTGAGACAAGAAAGAGGCTGGAGAGGAAGTATTCAAGGATAGATGATAACTATAACAGTCTAGATCAGGTTACTGAAGCATTAGCTCGTGCTGGCCTGGAGTCCTCGAATCTTATCGTTGGTATAGATTTCACAAAGAGCAATGAGTGGACAGGTTCAGCCTTGCTTTGGCCATTAGATGTTCTTGTATCGGTTTCCTTAATAGCATGTGCACATGTTAACTATGGCCTTTGTATAGGTGCAAGATCATTCAACCGTAGAAGTTTGCATCATATTGGAGAAGAGCAAAATCCCTATGAACAAGCAATAGCAATTATTGGCCAAACATTATCTTCCTTTGATGAGGATAATATGATTCCTTGCTTCGGTTTTGGAGATGGTATTTCTTCAAAAGAATTGTGTAATCGATCCATTTTTCGCTGA

Protein sequence

MGGKSSKHRSSRRNSSSRSNSQQWSHYGYPESPYTQSRSTPQYEYAPPTPSYGGTQAPETRKRLERKYSRIDDNYNSLDQVTEALARAGLESSNLIVGIDFTKSNEWTGSALLWPLDVLVSVSLIACAHVNYGLCIGARSFNRRSLHHIGEEQNPYEQAIAIIGQTLSSFDEDNMIPCFGFGDGISSKELCNRSIFR
Homology
[Close]
BLAST of CsaV3_1G000980 vs. NCBI nr
Match: XP_004138080.1 (PREDICTED: E3 ubiquitin-protein ligase RGLG2-like [Cucumis sativus])

HSP 1 Score: 273.5 bits (698), Expect = 5.7e-70
Identity = 155/183 (84.70%), Postives = 155/183 (84.70%), Query Frame = 0 

Query: 1   MGGKSSKHRXXXXXXXXXXXXXXWSHYGYPESPYTQSRSTPQYEYAPPTPSYGGTQAPET 60
           MGGKSSKHRXXXXXXXXXXXXXXWSHYGYPESPYTQSRSTPQYEYAPPTPSYGGTQAPET
Sbjct: 1   MGGKSSKHRXXXXXXXXXXXXXXWSHYGYPESPYTQSRSTPQYEYAPPTPSYGGTQAPET 60

Query: 61  RKRLERKYSRIDDNYNSLDQVTEALARAGLESSNLIVGIDFTKSNEWTGSALLWPLDVLV 120
           RKRLERKYSRIDDNYNSLDQVTEALARAGLESSNLIVGIDFTKSNEWT            
Sbjct: 61  RKRLERKYSRIDDNYNSLDQVTEALARAGLESSNLIVGIDFTKSNEWT------------ 120

Query: 121 SVSLIACAHVNYGLCIGARSFNRRSLHHIGEEQNPYEQAIAIIGQTLSSFDEDNMIPCFG 180
                           GARSFNRRSLHHIGEEQNPYEQAIAIIGQTLSSFDEDNMIPCFG
Sbjct: 121 ----------------GARSFNRRSLHHIGEEQNPYEQAIAIIGQTLSSFDEDNMIPCFG 155

Query: 181 FGD 184
           FGD
Sbjct: 181 FGD 155

[Close]
BLAST of CsaV3_1G000980 vs. NCBI nr
Match: KGN63523.1 (hypothetical protein Csa_1G002920 [Cucumis sativus])

HSP 1 Score: 273.5 bits (698), Expect = 5.7e-70
Identity = 155/183 (84.70%), Postives = 155/183 (84.70%), Query Frame = 0 

Query: 1   MGGKSSKHRXXXXXXXXXXXXXXWSHYGYPESPYTQSRSTPQYEYAPPTPSYGGTQAPET 60
           MGGKSSKHRXXXXXXXXXXXXXXWSHYGYPESPYTQSRSTPQYEYAPPTPSYGGTQAPET
Sbjct: 44  MGGKSSKHRXXXXXXXXXXXXXXWSHYGYPESPYTQSRSTPQYEYAPPTPSYGGTQAPET 103

Query: 61  RKRLERKYSRIDDNYNSLDQVTEALARAGLESSNLIVGIDFTKSNEWTGSALLWPLDVLV 120
           RKRLERKYSRIDDNYNSLDQVTEALARAGLESSNLIVGIDFTKSNEWT            
Sbjct: 104 RKRLERKYSRIDDNYNSLDQVTEALARAGLESSNLIVGIDFTKSNEWT------------ 163

Query: 121 SVSLIACAHVNYGLCIGARSFNRRSLHHIGEEQNPYEQAIAIIGQTLSSFDEDNMIPCFG 180
                           GARSFNRRSLHHIGEEQNPYEQAIAIIGQTLSSFDEDNMIPCFG
Sbjct: 164 ----------------GARSFNRRSLHHIGEEQNPYEQAIAIIGQTLSSFDEDNMIPCFG 198

Query: 181 FGD 184
           FGD
Sbjct: 224 FGD 198

[Close]
BLAST of CsaV3_1G000980 vs. NCBI nr
Match: XP_016903210.1 (PREDICTED: E3 ubiquitin-protein ligase RGLG2-like isoform X2 [Cucumis melo])

HSP 1 Score: 257.7 bits (657), Expect = 3.3e-65
Identity = 148/183 (80.87%), Postives = 150/183 (81.97%), Query Frame = 0 

Query: 1   MGGKSSKHRXXXXXXXXXXXXXXWSHYGYPESPYTQSRSTPQYEYAPPTPSYGGTQAPET 60
           MGGKSSKH XXXXXXXXXXXXX W HYGYPESPYTQSRSTP+  YAPPTPSYGGTQAPET
Sbjct: 33  MGGKSSKHXXXXXXXXXXXXXXQWGHYGYPESPYTQSRSTPR--YAPPTPSYGGTQAPET 92

Query: 61  RKRLERKYSRIDDNYNSLDQVTEALARAGLESSNLIVGIDFTKSNEWTGSALLWPLDVLV 120
           RKRLERKYSRIDDNYNSLDQVTEALARAGLESSNLIVGIDFTKSNEWT            
Sbjct: 93  RKRLERKYSRIDDNYNSLDQVTEALARAGLESSNLIVGIDFTKSNEWT------------ 152

Query: 121 SVSLIACAHVNYGLCIGARSFNRRSLHHIGEEQNPYEQAIAIIGQTLSSFDEDNMIPCFG 180
                           GARSFNRRSLHHIG+EQNPYEQAIAIIGQTLSSFDEDNMIPCFG
Sbjct: 153 ----------------GARSFNRRSLHHIGDEQNPYEQAIAIIGQTLSSFDEDNMIPCFG 185

Query: 181 FGD 184
           FGD
Sbjct: 213 FGD 185

[Close]
BLAST of CsaV3_1G000980 vs. NCBI nr
Match: XP_016903211.1 (PREDICTED: E3 ubiquitin-protein ligase RGLG2-like isoform X3 [Cucumis melo])

HSP 1 Score: 257.7 bits (657), Expect = 3.3e-65
Identity = 148/183 (80.87%), Postives = 150/183 (81.97%), Query Frame = 0 

Query: 1   MGGKSSKHRXXXXXXXXXXXXXXWSHYGYPESPYTQSRSTPQYEYAPPTPSYGGTQAPET 60
           MGGKSSKH XXXXXXXXXXXXX W HYGYPESPYTQSRSTP+  YAPPTPSYGGTQAPET
Sbjct: 23  MGGKSSKHXXXXXXXXXXXXXXQWGHYGYPESPYTQSRSTPR--YAPPTPSYGGTQAPET 82

Query: 61  RKRLERKYSRIDDNYNSLDQVTEALARAGLESSNLIVGIDFTKSNEWTGSALLWPLDVLV 120
           RKRLERKYSRIDDNYNSLDQVTEALARAGLESSNLIVGIDFTKSNEWT            
Sbjct: 83  RKRLERKYSRIDDNYNSLDQVTEALARAGLESSNLIVGIDFTKSNEWT------------ 142

Query: 121 SVSLIACAHVNYGLCIGARSFNRRSLHHIGEEQNPYEQAIAIIGQTLSSFDEDNMIPCFG 180
                           GARSFNRRSLHHIG+EQNPYEQAIAIIGQTLSSFDEDNMIPCFG
Sbjct: 143 ----------------GARSFNRRSLHHIGDEQNPYEQAIAIIGQTLSSFDEDNMIPCFG 175

Query: 181 FGD 184
           FGD
Sbjct: 203 FGD 175

[Close]
BLAST of CsaV3_1G000980 vs. NCBI nr
Match: XP_008464499.1 (PREDICTED: E3 ubiquitin-protein ligase RGLG2-like isoform X4 [Cucumis melo] >XP_008464500.1 PREDICTED: E3 ubiquitin-protein ligase RGLG2-like isoform X4 [Cucumis melo] >XP_008464501.1 PREDICTED: E3 ubiquitin-protein ligase RGLG2-like isoform X4 [Cucumis melo] >XP_016903213.1 PREDICTED: E3 ubiquitin-protein ligase RGLG2-like isoform X4 [Cucumis melo] >XP_016903214.1 PREDICTED: E3 ubiquitin-protein ligase RGLG2-like isoform X4 [Cucumis melo])

HSP 1 Score: 257.3 bits (656), Expect = 4.3e-65
Identity = 148/183 (80.87%), Postives = 150/183 (81.97%), Query Frame = 0 

Query: 1   MGGKSSKHRXXXXXXXXXXXXXXWSHYGYPESPYTQSRSTPQYEYAPPTPSYGGTQAPET 60
           MGGKSSKH XXXXXXXXXXXXX W HYGYPESPYTQSRSTP+  YAPPTPSYGGTQAPET
Sbjct: 1   MGGKSSKHGXXXXXXXXXXXXXQWGHYGYPESPYTQSRSTPR--YAPPTPSYGGTQAPET 60

Query: 61  RKRLERKYSRIDDNYNSLDQVTEALARAGLESSNLIVGIDFTKSNEWTGSALLWPLDVLV 120
           RKRLERKYSRIDDNYNSLDQVTEALARAGLESSNLIVGIDFTKSNEWT            
Sbjct: 61  RKRLERKYSRIDDNYNSLDQVTEALARAGLESSNLIVGIDFTKSNEWT------------ 120

Query: 121 SVSLIACAHVNYGLCIGARSFNRRSLHHIGEEQNPYEQAIAIIGQTLSSFDEDNMIPCFG 180
                           GARSFNRRSLHHIG+EQNPYEQAIAIIGQTLSSFDEDNMIPCFG
Sbjct: 121 ----------------GARSFNRRSLHHIGDEQNPYEQAIAIIGQTLSSFDEDNMIPCFG 153

Query: 181 FGD 184
           FGD
Sbjct: 181 FGD 153

[Close]
BLAST of CsaV3_1G000980 vs. TAIR10
Match: AT5G14420.1 (RING domain ligase2)

HSP 1 Score: 154.1 bits (388), Expect = 9.2e-38
Identity = 78/125 (62.40%), Postives = 90/125 (72.00%), Query Frame = 0 

Query: 59  ETRKRLERKYSRIDDNYNSLDQVTEALARAGLESSNLIVGIDFTKSNEWTGSALLWPLDV 118
           + +KRLERKYS+I D+Y+SL+QVTEALARAGLESSNLIVGIDFTKSNEWT          
Sbjct: 87  DNKKRLERKYSKISDDYSSLEQVTEALARAGLESSNLIVGIDFTKSNEWT---------- 146

Query: 119 LVSVSLIACAHVNYGLCIGARSFNRRSLHHIGEEQNPYEQAIAIIGQTLSSFDEDNMIPC 178
                             GARSFNR+SLH IG   NPYEQAI IIG+TL++FDEDN+IPC
Sbjct: 147 ------------------GARSFNRKSLHFIGSSPNPYEQAITIIGRTLAAFDEDNLIPC 183

Query: 179 FGFGD 184
           +GFGD
Sbjct: 207 YGFGD 183

[Close]
BLAST of CsaV3_1G000980 vs. TAIR10
Match: AT1G67800.2 (Copine (Calcium-dependent phospholipid-binding protein) family)

HSP 1 Score: 145.6 bits (366), Expect = 3.3e-35
Identity = 92/187 (49.20%), Postives = 106/187 (56.68%), Query Frame = 0 

Query: 1   MGGKSSKH--RXXXXXXXXXXXXXXWSHY--GYPESPYTQSRSTPQYEYAPPTPSYGGTQ 60
           MGG SSK   R               S Y   + +S Y Q   TP +  A P  SY   +
Sbjct: 21  MGGSSSKESPRGGGSGRRYERSVSGSSSYSSAWDQSSYYQ---TPNHPSASPVSSYNSGR 80

Query: 61  APETRKRLERKYSRIDDNYNSLDQVTEALARAGLESSNLIVGIDFTKSNEWTGSALLWPL 120
             +T K LERKYSRI DNY S+D+VT AL+ AGLESSNLIVGID TKSNEWT        
Sbjct: 81  --QTPKNLERKYSRIADNYRSIDEVTAALSHAGLESSNLIVGIDVTKSNEWT-------- 140

Query: 121 DVLVSVSLIACAHVNYGLCIGARSFNRRSLHHIGEEQNPYEQAIAIIGQTLSSFDEDNMI 180
                               GARSF R+SLH IG   NPY+QAI+IIG+TLS FDEDN+I
Sbjct: 141 --------------------GARSFGRKSLHFIGTTPNPYQQAISIIGKTLSVFDEDNLI 174

Query: 181 PCFGFGD 184
           PC+GFGD
Sbjct: 201 PCYGFGD 174

[Close]
BLAST of CsaV3_1G000980 vs. TAIR10
Match: AT3G01650.1 (RING domain ligase1)

HSP 1 Score: 144.8 bits (364), Expect = 5.6e-35
Identity = 72/123 (58.54%), Postives = 86/123 (69.92%), Query Frame = 0 

Query: 61  RKRLERKYSRIDDNYNSLDQVTEALARAGLESSNLIVGIDFTKSNEWTGSALLWPLDVLV 120
           RK+ +R+YS+I DNY+SL QV+EAL RAGLESSNLIVGIDFTKSNEWT            
Sbjct: 123 RKKFDRRYSKISDNYSSLLQVSEALGRAGLESSNLIVGIDFTKSNEWT------------ 182

Query: 121 SVSLIACAHVNYGLCIGARSFNRRSLHHIGEEQNPYEQAIAIIGQTLSSFDEDNMIPCFG 180
                           GA+SFNR+SLHH+    NPYEQAI IIG+TL++FDEDN+IPC+G
Sbjct: 183 ----------------GAKSFNRKSLHHLSNTPNPYEQAITIIGRTLAAFDEDNLIPCYG 217

Query: 181 FGD 184
           FGD
Sbjct: 243 FGD 217

[Close]
BLAST of CsaV3_1G000980 vs. TAIR10
Match: AT1G79380.1 (Ca(2)-dependent phospholipid-binding protein (Copine) family)

HSP 1 Score: 125.2 bits (313), Expect = 4.6e-29
Identity = 68/162 (41.98%), Postives = 89/162 (54.94%), Query Frame = 0 

Query: 28  GYPESPYTQSRSTPQYEYAPPTPSYGGTQAPETRKRLERKYSRIDDNYNSLDQVTEALAR 87
           G   S    +  T   +   P+PS       +     ++KY+ I D ++SLDQV++AL  
Sbjct: 13  GKSRSSRNMTLGTTSSQSHEPSPSDPSLSLADNTNATKKKYALIPDRFSSLDQVSKALRE 72

Query: 88  AGLESSNLIVGIDFTKSNEWTGSALLWPLDVLVSVSLIACAHVNYGLCIGARSFNRRSLH 147
           AGLESSNLI+G+DFTKSNEWTG                              SF+ + LH
Sbjct: 73  AGLESSNLILGVDFTKSNEWTGKT----------------------------SFDGKCLH 132

Query: 148 HIGEEQNPYEQAIAIIGQTLSSFDEDNMIPCFGFGDGISSKE 190
            +GE  NPYE+AI +IGQTL+ FDEDN+IPCFGFGD  +  E
Sbjct: 133 ALGETSNPYEKAIFVIGQTLAPFDEDNLIPCFGFGDSTTHDE 146

[Close]
BLAST of CsaV3_1G000980 vs. TAIR10
Match: AT5G63970.1 (Copine (Calcium-dependent phospholipid-binding protein) family)

HSP 1 Score: 122.1 bits (305), Expect = 3.9e-28
Identity = 64/115 (55.65%), Postives = 76/115 (66.09%), Query Frame = 0 

Query: 69  SRIDDNYNSLDQVTEALARAGLESSNLIVGIDFTKSNEWTGSALLWPLDVLVSVSLIACA 128
           S I D+++SLDQV  +L  AGLESSNLI+GIDFTKSNEWT                    
Sbjct: 12  SYIADHFSSLDQVITSLREAGLESSNLILGIDFTKSNEWT-------------------- 71

Query: 129 HVNYGLCIGARSFNRRSLHHIGEEQNPYEQAIAIIGQTLSSFDEDNMIPCFGFGD 184
                   G  SFNR+SLH IG+ QNPYE+AI+IIG+TLS FDED++IPCFGFGD
Sbjct: 72  --------GRYSFNRKSLHAIGKRQNPYEKAISIIGRTLSPFDEDDLIPCFGFGD 98

[Close]
BLAST of CsaV3_1G000980 vs. Swiss-Prot
Match: sp|Q9LY87|RGLG2_ARATH (E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana OX=3702 GN=RGLG2 PE=1 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.7e-36
Identity = 78/125 (62.40%), Postives = 90/125 (72.00%), Query Frame = 0 

Query: 59  ETRKRLERKYSRIDDNYNSLDQVTEALARAGLESSNLIVGIDFTKSNEWTGSALLWPLDV 118
           + +KRLERKYS+I D+Y+SL+QVTEALARAGLESSNLIVGIDFTKSNEWT          
Sbjct: 87  DNKKRLERKYSKISDDYSSLEQVTEALARAGLESSNLIVGIDFTKSNEWT---------- 146

Query: 119 LVSVSLIACAHVNYGLCIGARSFNRRSLHHIGEEQNPYEQAIAIIGQTLSSFDEDNMIPC 178
                             GARSFNR+SLH IG   NPYEQAI IIG+TL++FDEDN+IPC
Sbjct: 147 ------------------GARSFNRKSLHFIGSSPNPYEQAITIIGRTLAAFDEDNLIPC 183

Query: 179 FGFGD 184
           +GFGD
Sbjct: 207 YGFGD 183

[Close]
BLAST of CsaV3_1G000980 vs. Swiss-Prot
Match: sp|Q8LB88|RGLG5_ARATH (E3 ubiquitin-protein ligase RGLG5 OS=Arabidopsis thaliana OX=3702 GN=RGLG5 PE=1 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 5.9e-34
Identity = 92/187 (49.20%), Postives = 106/187 (56.68%), Query Frame = 0 

Query: 1   MGGKSSKH--RXXXXXXXXXXXXXXWSHY--GYPESPYTQSRSTPQYEYAPPTPSYGGTQ 60
           MGG SSK   R               S Y   + +S Y Q   TP +  A P  SY   +
Sbjct: 1   MGGSSSKESPRGGGSGRRYERSVSGSSSYSSAWDQSSYYQ---TPNHPSASPVSSYNSGR 60

Query: 61  APETRKRLERKYSRIDDNYNSLDQVTEALARAGLESSNLIVGIDFTKSNEWTGSALLWPL 120
             +T K LERKYSRI DNY S+D+VT AL+ AGLESSNLIVGID TKSNEWT        
Sbjct: 61  --QTPKNLERKYSRIADNYRSIDEVTAALSHAGLESSNLIVGIDVTKSNEWT-------- 120

Query: 121 DVLVSVSLIACAHVNYGLCIGARSFNRRSLHHIGEEQNPYEQAIAIIGQTLSSFDEDNMI 180
                               GARSF R+SLH IG   NPY+QAI+IIG+TLS FDEDN+I
Sbjct: 121 --------------------GARSFGRKSLHFIGTTPNPYQQAISIIGKTLSVFDEDNLI 154

Query: 181 PCFGFGD 184
           PC+GFGD
Sbjct: 181 PCYGFGD 154

[Close]
BLAST of CsaV3_1G000980 vs. Swiss-Prot
Match: sp|Q9SS90|RGLG1_ARATH (E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis thaliana OX=3702 GN=RGLG1 PE=1 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.0e-33
Identity = 72/123 (58.54%), Postives = 86/123 (69.92%), Query Frame = 0 

Query: 61  RKRLERKYSRIDDNYNSLDQVTEALARAGLESSNLIVGIDFTKSNEWTGSALLWPLDVLV 120
           RK+ +R+YS+I DNY+SL QV+EAL RAGLESSNLIVGIDFTKSNEWT            
Sbjct: 123 RKKFDRRYSKISDNYSSLLQVSEALGRAGLESSNLIVGIDFTKSNEWT------------ 182

Query: 121 SVSLIACAHVNYGLCIGARSFNRRSLHHIGEEQNPYEQAIAIIGQTLSSFDEDNMIPCFG 180
                           GA+SFNR+SLHH+    NPYEQAI IIG+TL++FDEDN+IPC+G
Sbjct: 183 ----------------GAKSFNRKSLHHLSNTPNPYEQAITIIGRTLAAFDEDNLIPCYG 217

Query: 181 FGD 184
           FGD
Sbjct: 243 FGD 217

[Close]
BLAST of CsaV3_1G000980 vs. Swiss-Prot
Match: sp|Q9SAL0|RGLG4_ARATH (E3 ubiquitin-protein ligase RGLG4 OS=Arabidopsis thaliana OX=3702 GN=RGLG4 PE=1 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 8.3e-28
Identity = 68/162 (41.98%), Postives = 89/162 (54.94%), Query Frame = 0 

Query: 28  GYPESPYTQSRSTPQYEYAPPTPSYGGTQAPETRKRLERKYSRIDDNYNSLDQVTEALAR 87
           G   S    +  T   +   P+PS       +     ++KY+ I D ++SLDQV++AL  
Sbjct: 13  GKSRSSRNMTLGTTSSQSHEPSPSDPSLSLADNTNATKKKYALIPDRFSSLDQVSKALRE 72

Query: 88  AGLESSNLIVGIDFTKSNEWTGSALLWPLDVLVSVSLIACAHVNYGLCIGARSFNRRSLH 147
           AGLESSNLI+G+DFTKSNEWTG                              SF+ + LH
Sbjct: 73  AGLESSNLILGVDFTKSNEWTGKT----------------------------SFDGKCLH 132

Query: 148 HIGEEQNPYEQAIAIIGQTLSSFDEDNMIPCFGFGDGISSKE 190
            +GE  NPYE+AI +IGQTL+ FDEDN+IPCFGFGD  +  E
Sbjct: 133 ALGETSNPYEKAIFVIGQTLAPFDEDNLIPCFGFGDSTTHDE 146

[Close]
BLAST of CsaV3_1G000980 vs. Swiss-Prot
Match: sp|Q8RX26|RGLG3_ARATH (E3 ubiquitin-protein ligase RGLG3 OS=Arabidopsis thaliana OX=3702 GN=RGLG3 PE=1 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 7.0e-27
Identity = 64/115 (55.65%), Postives = 76/115 (66.09%), Query Frame = 0 

Query: 69  SRIDDNYNSLDQVTEALARAGLESSNLIVGIDFTKSNEWTGSALLWPLDVLVSVSLIACA 128
           S I D+++SLDQV  +L  AGLESSNLI+GIDFTKSNEWT                    
Sbjct: 12  SYIADHFSSLDQVITSLREAGLESSNLILGIDFTKSNEWT-------------------- 71

Query: 129 HVNYGLCIGARSFNRRSLHHIGEEQNPYEQAIAIIGQTLSSFDEDNMIPCFGFGD 184
                   G  SFNR+SLH IG+ QNPYE+AI+IIG+TLS FDED++IPCFGFGD
Sbjct: 72  --------GRYSFNRKSLHAIGKRQNPYEKAISIIGRTLSPFDEDDLIPCFGFGD 98

[Close]
BLAST of CsaV3_1G000980 vs. TrEMBL
Match: tr|A0A0A0LP13|A0A0A0LP13_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G002920 PE=4 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 3.8e-70
Identity = 155/183 (84.70%), Postives = 155/183 (84.70%), Query Frame = 0 

Query: 1   MGGKSSKHRXXXXXXXXXXXXXXWSHYGYPESPYTQSRSTPQYEYAPPTPSYGGTQAPET 60
           MGGKSSKHRXXXXXXXXXXXXXXWSHYGYPESPYTQSRSTPQYEYAPPTPSYGGTQAPET
Sbjct: 44  MGGKSSKHRXXXXXXXXXXXXXXWSHYGYPESPYTQSRSTPQYEYAPPTPSYGGTQAPET 103

Query: 61  RKRLERKYSRIDDNYNSLDQVTEALARAGLESSNLIVGIDFTKSNEWTGSALLWPLDVLV 120
           RKRLERKYSRIDDNYNSLDQVTEALARAGLESSNLIVGIDFTKSNEWT            
Sbjct: 104 RKRLERKYSRIDDNYNSLDQVTEALARAGLESSNLIVGIDFTKSNEWT------------ 163

Query: 121 SVSLIACAHVNYGLCIGARSFNRRSLHHIGEEQNPYEQAIAIIGQTLSSFDEDNMIPCFG 180
                           GARSFNRRSLHHIGEEQNPYEQAIAIIGQTLSSFDEDNMIPCFG
Sbjct: 164 ----------------GARSFNRRSLHHIGEEQNPYEQAIAIIGQTLSSFDEDNMIPCFG 198

Query: 181 FGD 184
           FGD
Sbjct: 224 FGD 198

[Close]
BLAST of CsaV3_1G000980 vs. TrEMBL
Match: tr|A0A1S4E4Q2|A0A1S4E4Q2_CUCME (E3 ubiquitin-protein ligase RGLG2-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103502363 PE=4 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 2.2e-65
Identity = 148/183 (80.87%), Postives = 150/183 (81.97%), Query Frame = 0 

Query: 1   MGGKSSKHRXXXXXXXXXXXXXXWSHYGYPESPYTQSRSTPQYEYAPPTPSYGGTQAPET 60
           MGGKSSKH XXXXXXXXXXXXX W HYGYPESPYTQSRSTP+  YAPPTPSYGGTQAPET
Sbjct: 23  MGGKSSKHXXXXXXXXXXXXXXQWGHYGYPESPYTQSRSTPR--YAPPTPSYGGTQAPET 82

Query: 61  RKRLERKYSRIDDNYNSLDQVTEALARAGLESSNLIVGIDFTKSNEWTGSALLWPLDVLV 120
           RKRLERKYSRIDDNYNSLDQVTEALARAGLESSNLIVGIDFTKSNEWT            
Sbjct: 83  RKRLERKYSRIDDNYNSLDQVTEALARAGLESSNLIVGIDFTKSNEWT------------ 142

Query: 121 SVSLIACAHVNYGLCIGARSFNRRSLHHIGEEQNPYEQAIAIIGQTLSSFDEDNMIPCFG 180
                           GARSFNRRSLHHIG+EQNPYEQAIAIIGQTLSSFDEDNMIPCFG
Sbjct: 143 ----------------GARSFNRRSLHHIGDEQNPYEQAIAIIGQTLSSFDEDNMIPCFG 175

Query: 181 FGD 184
           FGD
Sbjct: 203 FGD 175

[Close]
BLAST of CsaV3_1G000980 vs. TrEMBL
Match: tr|A0A1S4E5G0|A0A1S4E5G0_CUCME (E3 ubiquitin-protein ligase RGLG2-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502363 PE=4 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 2.2e-65
Identity = 148/183 (80.87%), Postives = 150/183 (81.97%), Query Frame = 0 

Query: 1   MGGKSSKHRXXXXXXXXXXXXXXWSHYGYPESPYTQSRSTPQYEYAPPTPSYGGTQAPET 60
           MGGKSSKH XXXXXXXXXXXXX W HYGYPESPYTQSRSTP+  YAPPTPSYGGTQAPET
Sbjct: 33  MGGKSSKHXXXXXXXXXXXXXXQWGHYGYPESPYTQSRSTPR--YAPPTPSYGGTQAPET 92

Query: 61  RKRLERKYSRIDDNYNSLDQVTEALARAGLESSNLIVGIDFTKSNEWTGSALLWPLDVLV 120
           RKRLERKYSRIDDNYNSLDQVTEALARAGLESSNLIVGIDFTKSNEWT            
Sbjct: 93  RKRLERKYSRIDDNYNSLDQVTEALARAGLESSNLIVGIDFTKSNEWT------------ 152

Query: 121 SVSLIACAHVNYGLCIGARSFNRRSLHHIGEEQNPYEQAIAIIGQTLSSFDEDNMIPCFG 180
                           GARSFNRRSLHHIG+EQNPYEQAIAIIGQTLSSFDEDNMIPCFG
Sbjct: 153 ----------------GARSFNRRSLHHIGDEQNPYEQAIAIIGQTLSSFDEDNMIPCFG 185

Query: 181 FGD 184
           FGD
Sbjct: 213 FGD 185

[Close]
BLAST of CsaV3_1G000980 vs. TrEMBL
Match: tr|A0A1S3CLK7|A0A1S3CLK7_CUCME (E3 ubiquitin-protein ligase RGLG2-like isoform X4 OS=Cucumis melo OX=3656 GN=LOC103502363 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 2.8e-65
Identity = 148/183 (80.87%), Postives = 150/183 (81.97%), Query Frame = 0 

Query: 1   MGGKSSKHRXXXXXXXXXXXXXXWSHYGYPESPYTQSRSTPQYEYAPPTPSYGGTQAPET 60
           MGGKSSKH XXXXXXXXXXXXX W HYGYPESPYTQSRSTP+  YAPPTPSYGGTQAPET
Sbjct: 1   MGGKSSKHGXXXXXXXXXXXXXQWGHYGYPESPYTQSRSTPR--YAPPTPSYGGTQAPET 60

Query: 61  RKRLERKYSRIDDNYNSLDQVTEALARAGLESSNLIVGIDFTKSNEWTGSALLWPLDVLV 120
           RKRLERKYSRIDDNYNSLDQVTEALARAGLESSNLIVGIDFTKSNEWT            
Sbjct: 61  RKRLERKYSRIDDNYNSLDQVTEALARAGLESSNLIVGIDFTKSNEWT------------ 120

Query: 121 SVSLIACAHVNYGLCIGARSFNRRSLHHIGEEQNPYEQAIAIIGQTLSSFDEDNMIPCFG 180
                           GARSFNRRSLHHIG+EQNPYEQAIAIIGQTLSSFDEDNMIPCFG
Sbjct: 121 ----------------GARSFNRRSLHHIGDEQNPYEQAIAIIGQTLSSFDEDNMIPCFG 153

Query: 181 FGD 184
           FGD
Sbjct: 181 FGD 153

[Close]
BLAST of CsaV3_1G000980 vs. TrEMBL
Match: tr|A0A1S4E4Q6|A0A1S4E4Q6_CUCME (E3 ubiquitin-protein ligase RGLG2-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502363 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 2.8e-65
Identity = 148/183 (80.87%), Postives = 150/183 (81.97%), Query Frame = 0 

Query: 1   MGGKSSKHRXXXXXXXXXXXXXXWSHYGYPESPYTQSRSTPQYEYAPPTPSYGGTQAPET 60
           MGGKSSKH XXXXXXXXXXXXX W HYGYPESPYTQSRSTP+  YAPPTPSYGGTQAPET
Sbjct: 37  MGGKSSKHGXXXXXXXXXXXXXQWGHYGYPESPYTQSRSTPR--YAPPTPSYGGTQAPET 96

Query: 61  RKRLERKYSRIDDNYNSLDQVTEALARAGLESSNLIVGIDFTKSNEWTGSALLWPLDVLV 120
           RKRLERKYSRIDDNYNSLDQVTEALARAGLESSNLIVGIDFTKSNEWT            
Sbjct: 97  RKRLERKYSRIDDNYNSLDQVTEALARAGLESSNLIVGIDFTKSNEWT------------ 156

Query: 121 SVSLIACAHVNYGLCIGARSFNRRSLHHIGEEQNPYEQAIAIIGQTLSSFDEDNMIPCFG 180
                           GARSFNRRSLHHIG+EQNPYEQAIAIIGQTLSSFDEDNMIPCFG
Sbjct: 157 ----------------GARSFNRRSLHHIGDEQNPYEQAIAIIGQTLSSFDEDNMIPCFG 189

Query: 181 FGD 184
           FGD
Sbjct: 217 FGD 189

The following BLAST results are available for this feature:
BLAST of CsaV3_1G000980 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004138080.15.7e-7084.70PREDICTED: E3 ubiquitin-protein ligase RGLG2-like [Cucumis sativus][more]
KGN63523.15.7e-7084.70hypothetical protein Csa_1G002920 [Cucumis sativus][more]
XP_016903210.13.3e-6580.87PREDICTED: E3 ubiquitin-protein ligase RGLG2-like isoform X2 [Cucumis melo][more]
XP_016903211.13.3e-6580.87PREDICTED: E3 ubiquitin-protein ligase RGLG2-like isoform X3 [Cucumis melo][more]
XP_008464499.14.3e-6580.87PREDICTED: E3 ubiquitin-protein ligase RGLG2-like isoform X4 [Cucumis melo] >XP_... [more]
BLAST of CsaV3_1G000980 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G14420.19.2e-3862.40RING domain ligase2[more]
AT1G67800.23.3e-3549.20Copine (Calcium-dependent phospholipid-binding protein) family[more]
AT3G01650.15.6e-3558.54RING domain ligase1[more]
AT1G79380.14.6e-2941.98Ca(2)-dependent phospholipid-binding protein (Copine) family[more]
AT5G63970.13.9e-2855.65Copine (Calcium-dependent phospholipid-binding protein) family[more]
BLAST of CsaV3_1G000980 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9LY87|RGLG2_ARATH1.7e-3662.40E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana OX=3702 GN=RGLG2 PE=1 ... [more]
sp|Q8LB88|RGLG5_ARATH5.9e-3449.20E3 ubiquitin-protein ligase RGLG5 OS=Arabidopsis thaliana OX=3702 GN=RGLG5 PE=1 ... [more]
sp|Q9SS90|RGLG1_ARATH1.0e-3358.54E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis thaliana OX=3702 GN=RGLG1 PE=1 ... [more]
sp|Q9SAL0|RGLG4_ARATH8.3e-2841.98E3 ubiquitin-protein ligase RGLG4 OS=Arabidopsis thaliana OX=3702 GN=RGLG4 PE=1 ... [more]
sp|Q8RX26|RGLG3_ARATH7.0e-2755.65E3 ubiquitin-protein ligase RGLG3 OS=Arabidopsis thaliana OX=3702 GN=RGLG3 PE=1 ... [more]
BLAST of CsaV3_1G000980 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LP13|A0A0A0LP13_CUCSA3.8e-7084.70Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G002920 PE=4 SV=1[more]
tr|A0A1S4E4Q2|A0A1S4E4Q2_CUCME2.2e-6580.87E3 ubiquitin-protein ligase RGLG2-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC... [more]
tr|A0A1S4E5G0|A0A1S4E5G0_CUCME2.2e-6580.87E3 ubiquitin-protein ligase RGLG2-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC... [more]
tr|A0A1S3CLK7|A0A1S3CLK7_CUCME2.8e-6580.87E3 ubiquitin-protein ligase RGLG2-like isoform X4 OS=Cucumis melo OX=3656 GN=LOC... [more]
tr|A0A1S4E4Q6|A0A1S4E4Q6_CUCME2.8e-6580.87E3 ubiquitin-protein ligase RGLG2-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010734Copine
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G000980.1CsaV3_1G000980.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 61..81
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 15..46
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..61
NoneNo IPR availablePANTHERPTHR10857:SF62SUBFAMILY NOT NAMEDcoord: 136..184
coord: 1..110
NoneNo IPR availablePANTHERPTHR10857COPINEcoord: 136..184
coord: 1..110
IPR010734CopinePFAMPF07002Copinecoord: 145..188
e-value: 5.4E-13
score: 48.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G000980Carg20195Silver-seed gourdcarcucB1095
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G000980Cucumber (Chinese Long) v3cuccucB017
CsaV3_1G000980Silver-seed gourdcarcucB0395
CsaV3_1G000980Silver-seed gourdcarcucB0398
CsaV3_1G000980Silver-seed gourdcarcucB0466
CsaV3_1G000980Melon (DHL92) v3.5.1cucmeB053
CsaV3_1G000980Cucumber (Gy14) v2cgybcucB002
CsaV3_1G000980Cucumber (Gy14) v1cgycucB314
CsaV3_1G000980Cucurbita maxima (Rimu)cmacucB0058
CsaV3_1G000980Cucurbita maxima (Rimu)cmacucB0100
CsaV3_1G000980Cucurbita maxima (Rimu)cmacucB0117
CsaV3_1G000980Cucurbita maxima (Rimu)cmacucB0273
CsaV3_1G000980Cucurbita moschata (Rifu)cmocucB0044
CsaV3_1G000980Cucurbita moschata (Rifu)cmocucB0091
CsaV3_1G000980Cucurbita moschata (Rifu)cmocucB0094
CsaV3_1G000980Cucurbita moschata (Rifu)cmocucB0261
CsaV3_1G000980Cucurbita moschata (Rifu)cmocucB0801
CsaV3_1G000980Cucurbita pepo (Zucchini)cpecucB0442
CsaV3_1G000980Cucurbita pepo (Zucchini)cpecucB0473
CsaV3_1G000980Cucurbita pepo (Zucchini)cpecucB0739
CsaV3_1G000980Cucurbita pepo (Zucchini)cpecucB0804
CsaV3_1G000980Cucurbita pepo (Zucchini)cpecucB0814
CsaV3_1G000980Wild cucumber (PI 183967)cpicucB001
CsaV3_1G000980Wild cucumber (PI 183967)cpicucB126
CsaV3_1G000980Bottle gourd (USVL1VR-Ls)cuclsiB081
CsaV3_1G000980Melon (DHL92) v3.6.1cucmedB050
CsaV3_1G000980Watermelon (Charleston Gray)cucwcgB002
CsaV3_1G000980Watermelon (Charleston Gray)cucwcgB088
CsaV3_1G000980Watermelon (Charleston Gray)cucwcgB100
CsaV3_1G000980Watermelon (97103) v1cucwmB003
CsaV3_1G000980Watermelon (97103) v1cucwmB105
CsaV3_1G000980Watermelon (97103) v2cucwmbB076
CsaV3_1G000980Watermelon (97103) v2cucwmbB093
CsaV3_1G000980Wax gourdcucwgoB009
CsaV3_1G000980Wax gourdcucwgoB086