CsaV3_1G000540 (gene) Cucumber (Chinese Long) v3

NameCsaV3_1G000540
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionProtein transport protein Sec61 subunit gamma-like
Locationchr1 : 303180 .. 303334 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAACAAGAACGGAGAAGAACCAAACCTTTCAAGATCCGACGATTATATTGTTAATGGGAATAAAGATCAAGTTGACGAAGAACCCAACAAATCCCATCACGACGAAACCGATAGCTGTACGGAATGCCACTTTAGTGAATTCTGTGTCACAGTG

mRNA sequence

AAAACAAGAACGGAGAAGAACCAAACCTTTCAAGATCCGACGATTATATTGTTAATGGGAATAAAGATCAAGTTGACGAAGAACCCAACAAATCCCATCACGACGAAACCGATAGCTGTACGGAATGCCACTTTAGTGAATTCTGTGTCACAGTG

Coding sequence (CDS)

AAAACAAGAACGGAGAAGAACCAAACCTTTCAAGATCCGACGATTATATTGTTAATGGGAATAAAGATCAAGTTGACGAAGAACCCAACAAATCCCATCACGACGAAACCGATAGCTGTACGGAATGCCACTTTAGTGAATTCTGTGTCACAGTG

Protein sequence

KTRTEKNQTFQDPTIILLMGIKIKLTKNPTNPITTKPIAVRNATLVNSVSQX
BLAST of CsaV3_1G000540 vs. NCBI nr
Match: AFK44844.1 (unknown [Medicago truncatula])

HSP 1 Score: 56.2 bits (134), Expect = 3.8e-05
Identity = 28/35 (80.00%), Postives = 32/35 (91.43%), Query Frame = 0

Query: 15 IILLMGIKIKLTKNPTNPITTKPIAVRNATLVNSV 50
          ++LL+GIKI LTKNPTNPITTKPIAVR ATL NS+
Sbjct: 1  MMLLIGIKISLTKNPTNPITTKPIAVRTATLENSL 35

BLAST of CsaV3_1G000540 vs. NCBI nr
Match: XP_019460968.1 (PREDICTED: uncharacterized protein LOC109360483 [Lupinus angustifolius])

HSP 1 Score: 52.8 bits (125), Expect = 4.2e-04
Identity = 26/35 (74.29%), Postives = 31/35 (88.57%), Query Frame = 0

Query: 15 IILLMGIKIKLTKNPTNPITTKPIAVRNATLVNSV 50
          +ILL+G+K+ LTK PTNPITTKPIAVR ATL NS+
Sbjct: 1  MILLIGMKMSLTKKPTNPITTKPIAVRTATLENSL 35

BLAST of CsaV3_1G000540 vs. NCBI nr
Match: AFK41396.1 (unknown [Lotus japonicus])

HSP 1 Score: 52.4 bits (124), Expect = 5.5e-04
Identity = 25/35 (71.43%), Postives = 31/35 (88.57%), Query Frame = 0

Query: 15 IILLMGIKIKLTKNPTNPITTKPIAVRNATLVNSV 50
          ++LL+G+K+  TKNPTNPITTKPIAVR ATL NS+
Sbjct: 1  MMLLIGMKMSFTKNPTNPITTKPIAVRTATLENSL 35

BLAST of CsaV3_1G000540 vs. TrEMBL
Match: tr|I3SX52|I3SX52_MEDTR (Uncharacterized protein OS=Medicago truncatula OX=3880 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.5e-05
Identity = 28/35 (80.00%), Postives = 32/35 (91.43%), Query Frame = 0

Query: 15 IILLMGIKIKLTKNPTNPITTKPIAVRNATLVNSV 50
          ++LL+GIKI LTKNPTNPITTKPIAVR ATL NS+
Sbjct: 1  MMLLIGIKISLTKNPTNPITTKPIAVRTATLENSL 35

BLAST of CsaV3_1G000540 vs. TrEMBL
Match: tr|A0A2P2J6J8|A0A2P2J6J8_RHIMU (Protein transport protein Sec61 subunit gamma-like OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.2e-04
Identity = 26/34 (76.47%), Postives = 30/34 (88.24%), Query Frame = 0

Query: 16 ILLMGIKIKLTKNPTNPITTKPIAVRNATLVNSV 50
          +LLMG+K+ LTK PTNPITT PIAVRNAT VNS+
Sbjct: 1  MLLMGMKMSLTKKPTNPITTNPIAVRNATFVNSL 34

BLAST of CsaV3_1G000540 vs. TrEMBL
Match: tr|I3SMA4|I3SMA4_LOTJA (Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 3.6e-04
Identity = 25/35 (71.43%), Postives = 31/35 (88.57%), Query Frame = 0

Query: 15 IILLMGIKIKLTKNPTNPITTKPIAVRNATLVNSV 50
          ++LL+G+K+  TKNPTNPITTKPIAVR ATL NS+
Sbjct: 1  MMLLIGMKMSFTKNPTNPITTKPIAVRTATLENSL 35

BLAST of CsaV3_1G000540 vs. TrEMBL
Match: tr|A0A0V0ILI1|A0A0V0ILI1_SOLCH (Putative ovule protein OS=Solanum chacoense OX=4108 PE=4 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 8.0e-04
Identity = 26/34 (76.47%), Postives = 30/34 (88.24%), Query Frame = 0

Query: 16 ILLMGIKIKLTKNPTNPITTKPIAVRNATLVNSV 50
          +LL+G+ I LTKNPT PITTKPIAVR ATLVNS+
Sbjct: 1  MLLIGMNINLTKNPTXPITTKPIAVRVATLVNSL 34

BLAST of CsaV3_1G000540 vs. TrEMBL
Match: tr|C6SZ59|C6SZ59_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 8.0e-04
Identity = 25/35 (71.43%), Postives = 30/35 (85.71%), Query Frame = 0

Query: 15 IILLMGIKIKLTKNPTNPITTKPIAVRNATLVNSV 50
          ++LL+G+KI  TK PTNPITTKPIAVR ATL NS+
Sbjct: 1  MMLLIGMKISFTKKPTNPITTKPIAVRTATLENSL 35

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AFK44844.13.8e-0580.00unknown [Medicago truncatula][more]
XP_019460968.14.2e-0474.29PREDICTED: uncharacterized protein LOC109360483 [Lupinus angustifolius][more]
AFK41396.15.5e-0471.43unknown [Lotus japonicus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|I3SX52|I3SX52_MEDTR2.5e-0580.00Uncharacterized protein OS=Medicago truncatula OX=3880 PE=2 SV=1[more]
tr|A0A2P2J6J8|A0A2P2J6J8_RHIMU1.2e-0476.47Protein transport protein Sec61 subunit gamma-like OS=Rhizophora mucronata OX=61... [more]
tr|I3SMA4|I3SMA4_LOTJA3.6e-0471.43Uncharacterized protein OS=Lotus japonicus OX=34305 PE=2 SV=1[more]
tr|A0A0V0ILI1|A0A0V0ILI1_SOLCH8.0e-0476.47Putative ovule protein OS=Solanum chacoense OX=4108 PE=4 SV=1[more]
tr|C6SZ59|C6SZ59_SOYBN8.0e-0471.43Uncharacterized protein OS=Glycine max OX=3847 PE=2 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G000540.1CsaV3_1G000540.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G000540Wax gourdcucwgoB015
CsaV3_1G000540Wax gourdcucwgoB062
CsaV3_1G000540Wax gourdcucwgoB087
CsaV3_1G000540Cucumber (Chinese Long) v3cuccucB003
CsaV3_1G000540Cucumber (Chinese Long) v3cuccucB017
CsaV3_1G000540Silver-seed gourdcarcucB0395
CsaV3_1G000540Silver-seed gourdcarcucB0466
CsaV3_1G000540Silver-seed gourdcarcucB1050
CsaV3_1G000540Melon (DHL92) v3.5.1cucmeB053
CsaV3_1G000540Cucumber (Gy14) v2cgybcucB002
CsaV3_1G000540Cucumber (Gy14) v2cgybcucB010
CsaV3_1G000540Cucumber (Gy14) v2cgybcucB101
CsaV3_1G000540Cucumber (Gy14) v1cgycucB236
CsaV3_1G000540Cucumber (Gy14) v1cgycucB593
CsaV3_1G000540Cucurbita maxima (Rimu)cmacucB0058
CsaV3_1G000540Cucurbita maxima (Rimu)cmacucB0100
CsaV3_1G000540Cucurbita maxima (Rimu)cmacucB0117
CsaV3_1G000540Cucurbita maxima (Rimu)cmacucB0256
CsaV3_1G000540Cucurbita maxima (Rimu)cmacucB0273
CsaV3_1G000540Cucurbita maxima (Rimu)cmacucB0472
CsaV3_1G000540Cucurbita moschata (Rifu)cmocucB0044
CsaV3_1G000540Cucurbita moschata (Rifu)cmocucB0243
CsaV3_1G000540Cucurbita moschata (Rifu)cmocucB0091
CsaV3_1G000540Cucurbita moschata (Rifu)cmocucB0094
CsaV3_1G000540Cucurbita moschata (Rifu)cmocucB0261
CsaV3_1G000540Cucurbita moschata (Rifu)cmocucB0470
CsaV3_1G000540Cucurbita pepo (Zucchini)cpecucB0029
CsaV3_1G000540Cucurbita pepo (Zucchini)cpecucB0442
CsaV3_1G000540Cucurbita pepo (Zucchini)cpecucB0630
CsaV3_1G000540Cucurbita pepo (Zucchini)cpecucB0739
CsaV3_1G000540Cucurbita pepo (Zucchini)cpecucB0804
CsaV3_1G000540Cucurbita pepo (Zucchini)cpecucB0814
CsaV3_1G000540Wild cucumber (PI 183967)cpicucB001
CsaV3_1G000540Wild cucumber (PI 183967)cpicucB014
CsaV3_1G000540Wild cucumber (PI 183967)cpicucB126
CsaV3_1G000540Bottle gourd (USVL1VR-Ls)cuclsiB039
CsaV3_1G000540Bottle gourd (USVL1VR-Ls)cuclsiB081
CsaV3_1G000540Melon (DHL92) v3.5.1cucmeB019
CsaV3_1G000540Melon (DHL92) v3.5.1cucmeB084
CsaV3_1G000540Melon (DHL92) v3.6.1cucmedB017
CsaV3_1G000540Melon (DHL92) v3.6.1cucmedB050
CsaV3_1G000540Melon (DHL92) v3.6.1cucmedB077
CsaV3_1G000540Watermelon (Charleston Gray)cucwcgB056
CsaV3_1G000540Watermelon (Charleston Gray)cucwcgB072
CsaV3_1G000540Watermelon (Charleston Gray)cucwcgB088
CsaV3_1G000540Watermelon (97103) v1cucwmB032
CsaV3_1G000540Watermelon (97103) v1cucwmB105
CsaV3_1G000540Watermelon (97103) v2cucwmbB061
CsaV3_1G000540Watermelon (97103) v2cucwmbB048
CsaV3_1G000540Watermelon (97103) v2cucwmbB076