CsaV3_1G000370 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G000370
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 228052 .. 228721 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTTTTGTGGTGACCGGAGCAGCTTGCTTGGTCCATAGCTATCCCCTTGCTGTGCGTCTCACCATCAGCTCACATGAAACTCAGAGACCGTACGGGTCGGCAGAGGTGTGCTGTCTTTTGGAGGCTGAAGCTGACTACTCCATCGATTGGAAACTGGTTTTTGACATCTCTGGCGCTTCCAACTTTGTTGCTCAGGTTTTCCAACAATTCCTTCCTTTTGTTGTAAAGTTAAGTCATAACTGTGATTTTAATTTTTGGATTTAATTAAAGTATACCTCGTATCACTTAATTATATACACATCACACTCAATATTTAGAGATTGATTTTCTGGTGTGCTATCATGATTACTTTTGTTTACTGCTCTTTTATCCTTAATCTTGCAATAATGTCTCAGGTGACTAAGTTTAAATGTAGTGAGTTCGTGGTTGGTTGGACTATGCGTGAACCACAGTGTCGTTGATGGGGTCGGGGCTATGGACGAGTTTGTGAATTTGTGGGGTGAAACTTCGGGGAGCTTGCCTTTTTACCGTTTCTTGATAGGAACATTATCTAAGCTCAAGACCTAAGGAGGGCCGCACAGCAGTACGATTGCGTCCTGATAAAGCAAAGCTCCTATTAGCAGGGATTTTGGGTGGGGGGACAACCCCGTGTTTTCAATACCGGTGA

mRNA sequence

ATGACTTTTGTGGTGACCGGAGCAGCTTGCTTGGTCCATAGCTATCCCCTTGCTGTGCGTCTCACCATCAGCTCACATGAAACTCAGAGACCGTACGGGTCGGCAGAGGTGTGCTGTCTTTTGGAGGCTGAAGCTGACTACTCCATCGATTGGAAACTGGTTTTTGACATCTCTGGCGCTTCCAACTTTGTTGCTCAGGAACATTATCTAAGCTCAAGACCTAAGGAGGGCCGCACAGCAGTACGATTGCGTCCTGATAAAGCAAAGCTCCTATTAGCAGGGATTTTGGGTGGGGGGACAACCCCGTGTTTTCAATACCGGTGA

Coding sequence (CDS)

ATGACTTTTGTGGTGACCGGAGCAGCTTGCTTGGTCCATAGCTATCCCCTTGCTGTGCGTCTCACCATCAGCTCACATGAAACTCAGAGACCGTACGGGTCGGCAGAGGTGTGCTGTCTTTTGGAGGCTGAAGCTGACTACTCCATCGATTGGAAACTGGTTTTTGACATCTCTGGCGCTTCCAACTTTGTTGCTCAGGAACATTATCTAAGCTCAAGACCTAAGGAGGGCCGCACAGCAGTACGATTGCGTCCTGATAAAGCAAAGCTCCTATTAGCAGGGATTTTGGGTGGGGGGACAACCCCGTGTTTTCAATACCGGTGA

Protein sequence

MTFVVTGAACLVHSYPLAVRLTISSHETQRPYGSAEVCCLLEAEADYSIDWKLVFDISGASNFVAQEHYLSSRPKEGRTAVRLRPDKAKLLLAGILGGGTTPCFQYR
Homology
[Close]
BLAST of CsaV3_1G000370 vs. NCBI nr
Match: KGN63465.1 (hypothetical protein Csa_1G001370 [Cucumis sativus])

HSP 1 Score: 221.9 bits (564), Expect = 1.1e-54
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0 

Query: 1   MTFVVTGAACLVHSYPLAVRLTISSHETQRPYGSAEVCCLLEAEADYSIDWKLVFDISGA 60
           MTFVVTGAACLVHSYPLAVRLTISSHETQRPYGSAEVCCLLEAEADYSIDWKLVFDISGA
Sbjct: 1   MTFVVTGAACLVHSYPLAVRLTISSHETQRPYGSAEVCCLLEAEADYSIDWKLVFDISGA 60

Query: 61  SNFVAQEHYLSSRPKEGRTAVRLRPDKAKLLLAGILGGGTTPCFQYR 108
           SNFVAQEHYLSSRPKEGRTAVRLRPDKAKLLLAGILGGGTTPCFQYR
Sbjct: 61  SNFVAQEHYLSSRPKEGRTAVRLRPDKAKLLLAGILGGGTTPCFQYR 107

[Close]
BLAST of CsaV3_1G000370 vs. TrEMBL
Match: tr|A0A0A0LNI6|A0A0A0LNI6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G001370 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 7.1e-55
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0 

Query: 1   MTFVVTGAACLVHSYPLAVRLTISSHETQRPYGSAEVCCLLEAEADYSIDWKLVFDISGA 60
           MTFVVTGAACLVHSYPLAVRLTISSHETQRPYGSAEVCCLLEAEADYSIDWKLVFDISGA
Sbjct: 1   MTFVVTGAACLVHSYPLAVRLTISSHETQRPYGSAEVCCLLEAEADYSIDWKLVFDISGA 60

Query: 61  SNFVAQEHYLSSRPKEGRTAVRLRPDKAKLLLAGILGGGTTPCFQYR 108
           SNFVAQEHYLSSRPKEGRTAVRLRPDKAKLLLAGILGGGTTPCFQYR
Sbjct: 61  SNFVAQEHYLSSRPKEGRTAVRLRPDKAKLLLAGILGGGTTPCFQYR 107

The following BLAST results are available for this feature:
BLAST of CsaV3_1G000370 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN63465.11.1e-54100.00hypothetical protein Csa_1G001370 [Cucumis sativus][more]
BLAST of CsaV3_1G000370 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G000370 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G000370 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LNI6|A0A0A0LNI6_CUCSA7.1e-55100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G001370 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G000370.1CsaV3_1G000370.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G000370CSPI01G00350Wild cucumber (PI 183967)cpicucB001
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G000370Cucumber (Chinese Long) v3cuccucB003
CsaV3_1G000370Cucumber (Chinese Long) v3cuccucB017
CsaV3_1G000370Silver-seed gourdcarcucB0395
CsaV3_1G000370Silver-seed gourdcarcucB0466
CsaV3_1G000370Silver-seed gourdcarcucB0643
CsaV3_1G000370Melon (DHL92) v3.5.1cucmeB053
CsaV3_1G000370Cucumber (Gy14) v2cgybcucB002
CsaV3_1G000370Cucumber (Gy14) v2cgybcucB010
CsaV3_1G000370Cucumber (Gy14) v2cgybcucB101
CsaV3_1G000370Cucumber (Gy14) v1cgycucB236
CsaV3_1G000370Cucurbita maxima (Rimu)cmacucB0058
CsaV3_1G000370Cucurbita maxima (Rimu)cmacucB0100
CsaV3_1G000370Cucurbita maxima (Rimu)cmacucB0117
CsaV3_1G000370Cucurbita maxima (Rimu)cmacucB0256
CsaV3_1G000370Cucurbita maxima (Rimu)cmacucB0273
CsaV3_1G000370Cucurbita maxima (Rimu)cmacucB0472
CsaV3_1G000370Cucurbita moschata (Rifu)cmocucB0044
CsaV3_1G000370Cucurbita moschata (Rifu)cmocucB0243
CsaV3_1G000370Cucurbita moschata (Rifu)cmocucB0091
CsaV3_1G000370Cucurbita moschata (Rifu)cmocucB0094
CsaV3_1G000370Cucurbita moschata (Rifu)cmocucB0261
CsaV3_1G000370Cucurbita moschata (Rifu)cmocucB0470
CsaV3_1G000370Cucurbita pepo (Zucchini)cpecucB0029
CsaV3_1G000370Cucurbita pepo (Zucchini)cpecucB0442
CsaV3_1G000370Cucurbita pepo (Zucchini)cpecucB0630
CsaV3_1G000370Cucurbita pepo (Zucchini)cpecucB0739
CsaV3_1G000370Cucurbita pepo (Zucchini)cpecucB0804
CsaV3_1G000370Cucurbita pepo (Zucchini)cpecucB0814
CsaV3_1G000370Wild cucumber (PI 183967)cpicucB014
CsaV3_1G000370Wild cucumber (PI 183967)cpicucB126
CsaV3_1G000370Bottle gourd (USVL1VR-Ls)cuclsiB039
CsaV3_1G000370Bottle gourd (USVL1VR-Ls)cuclsiB081
CsaV3_1G000370Melon (DHL92) v3.5.1cucmeB019
CsaV3_1G000370Melon (DHL92) v3.5.1cucmeB084
CsaV3_1G000370Melon (DHL92) v3.6.1cucmedB017
CsaV3_1G000370Melon (DHL92) v3.6.1cucmedB050
CsaV3_1G000370Melon (DHL92) v3.6.1cucmedB077
CsaV3_1G000370Watermelon (Charleston Gray)cucwcgB056
CsaV3_1G000370Watermelon (Charleston Gray)cucwcgB072
CsaV3_1G000370Watermelon (Charleston Gray)cucwcgB088
CsaV3_1G000370Watermelon (97103) v1cucwmB032
CsaV3_1G000370Watermelon (97103) v1cucwmB105
CsaV3_1G000370Watermelon (97103) v2cucwmbB048
CsaV3_1G000370Watermelon (97103) v2cucwmbB076
CsaV3_1G000370Wax gourdcucwgoB015
CsaV3_1G000370Wax gourdcucwgoB062
CsaV3_1G000370Wax gourdcucwgoB087