CsaV3_1G000350 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G000350
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 224252 .. 224452 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCAGAAGCATTCGGAGCCCATGCCCATATCAGCTTCGGCTTCGGCTTCATCTTTTTGTGGCAAGCCGAGGCCGCATAGTGCACGTCAACAAATACATGGTACTTTTCTTGTTTCAACTTTAGTCGACGTGGCCACGATGACAAGGCGGAAAGATTTCTTGTACTCGGGGCTAATCTTGGTCATTTTCACCAAATAA

mRNA sequence

ATGAATCAGAAGCATTCGGAGCCCATGCCCATATCAGCTTCGGCTTCGGCTTCATCTTTTTGTGGCAAGCCGAGGCCGCATAGTGCACGTCAACAAATACATGGTACTTTTCTTGTTTCAACTTTAGTCGACGTGGCCACGATGACAAGGCGGAAAGATTTCTTGTACTCGGGGCTAATCTTGGTCATTTTCACCAAATAA

Coding sequence (CDS)

ATGAATCAGAAGCATTCGGAGCCCATGCCCATATCAGCTTCGGCTTCGGCTTCATCTTTTTGTGGCAAGCCGAGGCCGCATAGTGCACGTCAACAAATACATGGTACTTTTCTTGTTTCAACTTTAGTCGACGTGGCCACGATGACAAGGCGGAAAGATTTCTTGTACTCGGGGCTAATCTTGGTCATTTTCACCAAATAA

Protein sequence

MNQKHSEPMPISASASASSFCGKPRPHSARQQIHGTFLVSTLVDVATMTRRKDFLYSGLILVIFTK
Homology
[Close]
BLAST of CsaV3_1G000350 vs. NCBI nr
Match: KGN63463.1 (hypothetical protein Csa_1G001350 [Cucumis sativus])

HSP 1 Score: 132.5 bits (332), Expect = 5.3e-28
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0 

Query: 1  MNQKHSEPMPISASASASSFCGKPRPHSARQQIHGTFLVSTLVDVATMTRRKDFLYSGLI 60
          MNQKHSEPMPISASASASSFCGKPRPHSARQQIHGTFLVSTLVDVATMTRRKDFLYSGLI
Sbjct: 1  MNQKHSEPMPISASASASSFCGKPRPHSARQQIHGTFLVSTLVDVATMTRRKDFLYSGLI 60

Query: 61 LVIFTK 67
          LVIFTK
Sbjct: 61 LVIFTK 66

[Close]
BLAST of CsaV3_1G000350 vs. TrEMBL
Match: tr|A0A0A0LNU5|A0A0A0LNU5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G001350 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 3.5e-28
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0 

Query: 1  MNQKHSEPMPISASASASSFCGKPRPHSARQQIHGTFLVSTLVDVATMTRRKDFLYSGLI 60
          MNQKHSEPMPISASASASSFCGKPRPHSARQQIHGTFLVSTLVDVATMTRRKDFLYSGLI
Sbjct: 1  MNQKHSEPMPISASASASSFCGKPRPHSARQQIHGTFLVSTLVDVATMTRRKDFLYSGLI 60

Query: 61 LVIFTK 67
          LVIFTK
Sbjct: 61 LVIFTK 66

The following BLAST results are available for this feature:
BLAST of CsaV3_1G000350 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN63463.15.3e-28100.00hypothetical protein Csa_1G001350 [Cucumis sativus][more]
BLAST of CsaV3_1G000350 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G000350 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G000350 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LNU5|A0A0A0LNU5_CUCSA3.5e-28100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G001350 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G000350.1CsaV3_1G000350.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G000350Silver-seed gourdcarcucB0395
CsaV3_1G000350Silver-seed gourdcarcucB0466
CsaV3_1G000350Silver-seed gourdcarcucB0643
CsaV3_1G000350Melon (DHL92) v3.5.1cucmeB053
CsaV3_1G000350Cucumber (Gy14) v2cgybcucB002
CsaV3_1G000350Cucumber (Gy14) v2cgybcucB010
CsaV3_1G000350Cucumber (Gy14) v2cgybcucB101
CsaV3_1G000350Cucumber (Gy14) v1cgycucB236
CsaV3_1G000350Cucurbita maxima (Rimu)cmacucB0058
CsaV3_1G000350Cucurbita maxima (Rimu)cmacucB0100
CsaV3_1G000350Cucurbita maxima (Rimu)cmacucB0117
CsaV3_1G000350Cucurbita maxima (Rimu)cmacucB0256
CsaV3_1G000350Cucurbita maxima (Rimu)cmacucB0273
CsaV3_1G000350Cucurbita maxima (Rimu)cmacucB0472
CsaV3_1G000350Cucurbita moschata (Rifu)cmocucB0044
CsaV3_1G000350Cucurbita moschata (Rifu)cmocucB0243
CsaV3_1G000350Cucurbita moschata (Rifu)cmocucB0091
CsaV3_1G000350Cucurbita moschata (Rifu)cmocucB0094
CsaV3_1G000350Cucurbita moschata (Rifu)cmocucB0261
CsaV3_1G000350Cucurbita moschata (Rifu)cmocucB0470
CsaV3_1G000350Cucurbita pepo (Zucchini)cpecucB0029
CsaV3_1G000350Cucurbita pepo (Zucchini)cpecucB0442
CsaV3_1G000350Cucurbita pepo (Zucchini)cpecucB0630
CsaV3_1G000350Cucurbita pepo (Zucchini)cpecucB0739
CsaV3_1G000350Cucurbita pepo (Zucchini)cpecucB0804
CsaV3_1G000350Cucurbita pepo (Zucchini)cpecucB0814
CsaV3_1G000350Wild cucumber (PI 183967)cpicucB001
CsaV3_1G000350Wild cucumber (PI 183967)cpicucB014
CsaV3_1G000350Wild cucumber (PI 183967)cpicucB126
CsaV3_1G000350Bottle gourd (USVL1VR-Ls)cuclsiB039
CsaV3_1G000350Bottle gourd (USVL1VR-Ls)cuclsiB081
CsaV3_1G000350Melon (DHL92) v3.5.1cucmeB019
CsaV3_1G000350Melon (DHL92) v3.5.1cucmeB084
CsaV3_1G000350Melon (DHL92) v3.6.1cucmedB017
CsaV3_1G000350Melon (DHL92) v3.6.1cucmedB050
CsaV3_1G000350Melon (DHL92) v3.6.1cucmedB077
CsaV3_1G000350Watermelon (Charleston Gray)cucwcgB056
CsaV3_1G000350Watermelon (Charleston Gray)cucwcgB072
CsaV3_1G000350Watermelon (Charleston Gray)cucwcgB088
CsaV3_1G000350Watermelon (97103) v1cucwmB032
CsaV3_1G000350Watermelon (97103) v1cucwmB105
CsaV3_1G000350Watermelon (97103) v2cucwmbB048
CsaV3_1G000350Watermelon (97103) v2cucwmbB076
CsaV3_1G000350Wax gourdcucwgoB015
CsaV3_1G000350Wax gourdcucwgoB062
CsaV3_1G000350Wax gourdcucwgoB087
CsaV3_1G000350Cucumber (Chinese Long) v3cuccucB003
CsaV3_1G000350Cucumber (Chinese Long) v3cuccucB017