CsaV3_1G000270 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G000270
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Descriptionexosome complex component RRP4 homolog
Locationchr1 : 169774 .. 172053 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAGGTCTACAGATTTTCTTGAATCATACACAGGAGACTCAAAACGCTTGAGTGACTCTCATCAAATGCTAATTCTGATGCTTCAGGTGCAGTTTCTGACACTCTTCCTCTCAATTACAAGGATGGCGTTCTCAAGTATATAATTTCTCACTATCCTTATATAATAAAAGTTTGGTTTGTTGTTGTGTACTTGCCGGGGGATTATATGCATTGAGGTATAACTGAAATTTGTATAAAGGGGACATGGGACTCTTGACTTGAATGGAGAAGTAGTCACCACTATTTGTGGAGTGGTTGAGCGAGTCAATAAGCTTATCTATGTACGTGCCTTACGTGCCATGTTGTCCATGAAATCTTGTAATTTGGTTTATCTGGATGATAGCTTAATGTTTTCCTTTCTTCGTTGTATCGTTATTATATCTTCTCTGATGTAATTGTGTATACTGGATGTTAGATATGAACCAGAGATTGGTGATATCGTTGCGGGACGTGTTACAGAGGTAAAGCTAAATGCTTTTTATTAGTTTTTTTGGTTTTATGAAAATATAATATAATAATGGTGAGTAAAATAGCCAGGATACTTCCATTTGGGAGTCACGGTTAAGATGTTCTATATAGGAAAAATGTGTTAGAATGCCTCCCACCACCCCATTTTTTTCTTATCATTTGATGGGATCTTATTCAGGTTGCTCCAAAACGTTGGAGATTGGATATACATTTTAGCCAAGATGCTGTTTTGATGCTTTCTTCGATGAACTTGCCTGATGGTTTTCAGGTATTAGAGAATTCCCTTTCGTTATGGAAATAATGGTGCATACTGTTGCACCAGAGGGTGAATCATTGATGCCTTCTGTTGAACTTTACAGAAAATTTAACTGCAATTTTGATTCAACTGATCTTCCTCTTCTTCCTTTTTTTTTTTTTCTCTAAAGAGTGGTTGCATTTGTTGTAACTATGGATTGATTGTGTTATTTTTATTTCTAGAGGAGGCGAACTGCAGTTGATGAACTCAACATTGCAGAGCATTTTTTAAGAAAATGATGTTATTTGTGTAAGTGTTATAGCTTTTACTTTCACCTATAAGTATAACCGTCAGAAAGAATATATGGTTTCCTACGTTGCTTACATATAATATTAGGTCTTCTCCTATAGTTTTCAATTTTTGAAGAATTAGACTTTTGAACTTCTGAGGCGTTGCCTGAAGATATTTGCCTATCAATCTCTAAATCTCTGTACAATGATTACAGCCTAAATTTACCGTGCACTAGTCTATAATAAATAAACACCACTCTCAACTCTCATCAGTAATTGTTCCTGCATAATTTTCCATTTAGAAAAAATAACATCACCACATCCTTTCTCAGGCAGAAGTACGTGGTCTTTAGCATGATGAGCTACACCTTCAAGCAAGAAGCCAGAAGTATGGGAAGGTAGAAGACCTCGTTCTTAAGCTCCTACATGTTGATGTAAAGACAGCATCAGTTTTTAAATTATTTTTTTGTGTCACACACAATATTTGAGGGTACCTGTATTGATACGATACCTTTGATGCACTGGTTATTGGTTATCATGTGTTCCTAACAACTTTTCTGGCATCATTTCATCTTGTTTCTATATGGCTTGTGAATAAGATTTGTGTATTTGTATCCAGCTTGAACGTGGTCAACTTCTAACAGTTTCACCATATCTAGTAAAGAGACGCAAACAACACTTCCATCATTTGGAGCAGTATGGTATTGACTTAATACTCGGATGCAATGGATTTATCTGGATCGGGAGCATGTTGATTCTACACAGGACATGATGATAGAAGATCAAGTTAATAAAATTGAACAAAAGGGTTCAAAATTTGAAGGAACCTTTGGCAACCAAATGCAAGAAAGAGTACATACTCCATTAGAGACACGGCAGAATATATGCAGAACTGCAAATGCTATTCGAGTGTTGTCTTTCTGAGGTTTTATAATAACAGTAGAAGTCATAATGGAGACAATTAGTCTAAGTATTTCTCTGAACATCGATGTCCATGAAATGCTCGGTTCGGAGTTCTTTGTCCTCATGGCAGAAAAAGAGGGTGATTTGGTTTTCTGTCAATATTGTGTGATTTGAACCACTCCTAGTGAAAATTTTGCTACGAACTGTTTGATTTGCAGAAGAATTTAGTATTAGAATATTTTGTAGAATTTTAGATTACGACCACTTGGTCTGTGTACATAGCAGTAAATAATGCAACACTTACTTAATTATTCTGTAGTATGTGGTTTCACAAATGTCTTT

mRNA sequence

ATGAGAGGTGCAGTTTCTGACACTCTTCCTCTCAATTACAAGGATGGCGTTCTCAAGGGACATGGGACTCTTGACTTGAATGGAGAAGTAGTCACCACTATTTGTGGAGTGGTTGAGCGAGTCAATAAGCTTATCTATGTACGTGCCTTACGTGCCATGTTGTCCATGAAATCTTGTAATTTGGTTTATCTGGATGATAGCTTAATGTTTTCCTTTCTTCGTTGTATCGTTATTATATCTTCTCTGATATATGAACCAGAGATTGGTGATATCGTTGCGGGACGTGTTACAGAGGTTGCTCCAAAACGTTGGAGATTGGATATACATTTTAGCCAAGATGCTGTTTTGATGCTTTCTTCGATGAACTTGCCTGATGGTTTTCAGAGGAGGCGAACTGCAGTTGATGAACTCAACATTGCAGAGCATTTTTTAAGAAAATGA

Coding sequence (CDS)

ATGAGAGGTGCAGTTTCTGACACTCTTCCTCTCAATTACAAGGATGGCGTTCTCAAGGGACATGGGACTCTTGACTTGAATGGAGAAGTAGTCACCACTATTTGTGGAGTGGTTGAGCGAGTCAATAAGCTTATCTATGTACGTGCCTTACGTGCCATGTTGTCCATGAAATCTTGTAATTTGGTTTATCTGGATGATAGCTTAATGTTTTCCTTTCTTCGTTGTATCGTTATTATATCTTCTCTGATATATGAACCAGAGATTGGTGATATCGTTGCGGGACGTGTTACAGAGGTTGCTCCAAAACGTTGGAGATTGGATATACATTTTAGCCAAGATGCTGTTTTGATGCTTTCTTCGATGAACTTGCCTGATGGTTTTCAGAGGAGGCGAACTGCAGTTGATGAACTCAACATTGCAGAGCATTTTTTAAGAAAATGA

Protein sequence

MRGAVSDTLPLNYKDGVLKGHGTLDLNGEVVTTICGVVERVNKLIYVRALRAMLSMKSCNLVYLDDSLMFSFLRCIVIISSLIYEPEIGDIVAGRVTEVAPKRWRLDIHFSQDAVLMLSSMNLPDGFQRRRTAVDELNIAEHFLRK
Homology
[Close]
BLAST of CsaV3_1G000270 vs. NCBI nr
Match: XP_008464390.1 (PREDICTED: exosome complex component RRP4 homolog [Cucumis melo])

HSP 1 Score: 183.0 bits (463), Expect = 7.6e-43
Identity = 95/140 (67.86%), Postives = 102/140 (72.86%), Query Frame = 0 

Query: 4   AVSDTLPLNYKDGVLKGHGTLDLNGEVVTTICGVVERVNKLIYVRALRAMLSMKSCNLVY 63
           AV DT+P +Y+DGVLKGHGTLDLNGEVVTTICGVVERVNKLIYVR+LRA           
Sbjct: 37  AVGDTVPFSYEDGVLKGHGTLDLNGEVVTTICGVVERVNKLIYVRSLRAR---------- 96

Query: 64  LDDSLMFSFLRCIVIISSLIYEPEIGDIVAGRVTEVAPKRWRLDIHFSQDAVLMLSSMNL 123
                               Y+PEIGDIV GRVTEVAPKRWRLDIH+SQDAVLMLSSMNL
Sbjct: 97  --------------------YKPEIGDIVVGRVTEVAPKRWRLDIHYSQDAVLMLSSMNL 146

Query: 124 PDGFQRRRTAVDELNIAEHF 144
           PDG QRRRTAVDELN+   F
Sbjct: 157 PDGIQRRRTAVDELNMRSIF 146

[Close]
BLAST of CsaV3_1G000270 vs. NCBI nr
Match: XP_022931250.1 (exosome complex component RRP4 homolog [Cucurbita moschata] >XP_022931251.1 exosome complex component RRP4 homolog [Cucurbita moschata] >XP_022931253.1 exosome complex component RRP4 homolog [Cucurbita moschata])

HSP 1 Score: 181.0 bits (458), Expect = 2.9e-42
Identity = 93/139 (66.91%), Postives = 102/139 (73.38%), Query Frame = 0 

Query: 5   VSDTLPLNYKDGVLKGHGTLDLNGEVVTTICGVVERVNKLIYVRALRAMLSMKSCNLVYL 64
           V+DT+PLNY+DGVLKGHGTLDLNGEVV TICGVVERVNKLIYVRALRA            
Sbjct: 38  VADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRAR----------- 97

Query: 65  DDSLMFSFLRCIVIISSLIYEPEIGDIVAGRVTEVAPKRWRLDIHFSQDAVLMLSSMNLP 124
                              Y+PE+GDI+ GRVTEVAPKRWRLDI++SQDAVLMLSSMNLP
Sbjct: 98  -------------------YKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLMLSSMNLP 146

Query: 125 DGFQRRRTAVDELNIAEHF 144
           DG QRRRTAVDELN+   F
Sbjct: 158 DGIQRRRTAVDELNMRTIF 146

[Close]
BLAST of CsaV3_1G000270 vs. NCBI nr
Match: XP_023533481.1 (exosome complex component RRP4 homolog [Cucurbita pepo subsp. pepo] >XP_023533482.1 exosome complex component RRP4 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 181.0 bits (458), Expect = 2.9e-42
Identity = 93/139 (66.91%), Postives = 102/139 (73.38%), Query Frame = 0 

Query: 5   VSDTLPLNYKDGVLKGHGTLDLNGEVVTTICGVVERVNKLIYVRALRAMLSMKSCNLVYL 64
           V+DT+PLNY+DGVLKGHGTLDLNGEVV TICGVVERVNKLIYVRALRA            
Sbjct: 38  VADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRAR----------- 97

Query: 65  DDSLMFSFLRCIVIISSLIYEPEIGDIVAGRVTEVAPKRWRLDIHFSQDAVLMLSSMNLP 124
                              Y+PE+GDI+ GRVTEVAPKRWRLDI++SQDAVLMLSSMNLP
Sbjct: 98  -------------------YKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLMLSSMNLP 146

Query: 125 DGFQRRRTAVDELNIAEHF 144
           DG QRRRTAVDELN+   F
Sbjct: 158 DGIQRRRTAVDELNMRTIF 146

[Close]
BLAST of CsaV3_1G000270 vs. NCBI nr
Match: XP_008442058.1 (PREDICTED: exosome complex component RRP4 homolog isoform X1 [Cucumis melo] >XP_008442060.1 PREDICTED: exosome complex component RRP4 homolog isoform X1 [Cucumis melo])

HSP 1 Score: 180.3 bits (456), Expect = 4.9e-42
Identity = 93/139 (66.91%), Postives = 102/139 (73.38%), Query Frame = 0 

Query: 5   VSDTLPLNYKDGVLKGHGTLDLNGEVVTTICGVVERVNKLIYVRALRAMLSMKSCNLVYL 64
           V+DT+PLNY+DGVLKGHGTLDLNGEVV +ICGVVERVNKLIYVRALRA            
Sbjct: 52  VADTIPLNYEDGVLKGHGTLDLNGEVVASICGVVERVNKLIYVRALRAR----------- 111

Query: 65  DDSLMFSFLRCIVIISSLIYEPEIGDIVAGRVTEVAPKRWRLDIHFSQDAVLMLSSMNLP 124
                              Y+PE+GDIV GRVTEVAPKRWRLDI++SQDAVLMLSSMNLP
Sbjct: 112 -------------------YKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLMLSSMNLP 160

Query: 125 DGFQRRRTAVDELNIAEHF 144
           DG QRRRTAVDELN+   F
Sbjct: 172 DGIQRRRTAVDELNMRSIF 160

[Close]
BLAST of CsaV3_1G000270 vs. NCBI nr
Match: XP_008442061.1 (PREDICTED: exosome complex component RRP4 homolog isoform X2 [Cucumis melo] >XP_008442062.1 PREDICTED: exosome complex component RRP4 homolog isoform X2 [Cucumis melo] >XP_008442063.1 PREDICTED: exosome complex component RRP4 homolog isoform X2 [Cucumis melo] >XP_008442064.1 PREDICTED: exosome complex component RRP4 homolog isoform X2 [Cucumis melo])

HSP 1 Score: 180.3 bits (456), Expect = 4.9e-42
Identity = 93/139 (66.91%), Postives = 102/139 (73.38%), Query Frame = 0 

Query: 5   VSDTLPLNYKDGVLKGHGTLDLNGEVVTTICGVVERVNKLIYVRALRAMLSMKSCNLVYL 64
           V+DT+PLNY+DGVLKGHGTLDLNGEVV +ICGVVERVNKLIYVRALRA            
Sbjct: 38  VADTIPLNYEDGVLKGHGTLDLNGEVVASICGVVERVNKLIYVRALRAR----------- 97

Query: 65  DDSLMFSFLRCIVIISSLIYEPEIGDIVAGRVTEVAPKRWRLDIHFSQDAVLMLSSMNLP 124
                              Y+PE+GDIV GRVTEVAPKRWRLDI++SQDAVLMLSSMNLP
Sbjct: 98  -------------------YKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLMLSSMNLP 146

Query: 125 DGFQRRRTAVDELNIAEHF 144
           DG QRRRTAVDELN+   F
Sbjct: 158 DGIQRRRTAVDELNMRSIF 146

[Close]
BLAST of CsaV3_1G000270 vs. TAIR10
Match: AT1G03360.1 (ribosomal RNA processing 4)

HSP 1 Score: 146.7 bits (369), Expect = 1.1e-35
Identity = 71/140 (50.71%), Postives = 95/140 (67.86%), Query Frame = 0 

Query: 5   VSDTLPLNYKDGVLKGHGTLDLNGEVVTTICGVVERVNKLIYVRALRAMLSMKSCNLVYL 64
           V+D++P+N+ D  LKGHGT +++GE++ T+CGVVERV+KL+YVR LRA            
Sbjct: 40  VTDSIPVNHDDAFLKGHGTSEVDGELLATVCGVVERVDKLVYVRTLRAR----------- 99

Query: 65  DDSLMFSFLRCIVIISSLIYEPEIGDIVAGRVTEVAPKRWRLDIHFSQDAVLMLSSMNLP 124
                              Y+PE+GDIV GRV EVA KRWR++++F+QD VLMLSSMN+P
Sbjct: 100 -------------------YKPEVGDIVVGRVIEVAQKRWRVELNFNQDGVLMLSSMNMP 149

Query: 125 DGFQRRRTAVDELNIAEHFL 145
           DG QRRRT+VDELN+   F+
Sbjct: 160 DGIQRRRTSVDELNMRNIFV 149

[Close]
BLAST of CsaV3_1G000270 vs. Swiss-Prot
Match: sp|Q9ZVT7|RRP4_ARATH (Exosome complex component RRP4 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP4 PE=1 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 2.0e-34
Identity = 71/140 (50.71%), Postives = 95/140 (67.86%), Query Frame = 0 

Query: 5   VSDTLPLNYKDGVLKGHGTLDLNGEVVTTICGVVERVNKLIYVRALRAMLSMKSCNLVYL 64
           V+D++P+N+ D  LKGHGT +++GE++ T+CGVVERV+KL+YVR LRA            
Sbjct: 40  VTDSIPVNHDDAFLKGHGTSEVDGELLATVCGVVERVDKLVYVRTLRAR----------- 99

Query: 65  DDSLMFSFLRCIVIISSLIYEPEIGDIVAGRVTEVAPKRWRLDIHFSQDAVLMLSSMNLP 124
                              Y+PE+GDIV GRV EVA KRWR++++F+QD VLMLSSMN+P
Sbjct: 100 -------------------YKPEVGDIVVGRVIEVAQKRWRVELNFNQDGVLMLSSMNMP 149

Query: 125 DGFQRRRTAVDELNIAEHFL 145
           DG QRRRT+VDELN+   F+
Sbjct: 160 DGIQRRRTSVDELNMRNIFV 149

[Close]
BLAST of CsaV3_1G000270 vs. Swiss-Prot
Match: sp|Q09704|RRP4_SCHPO (Exosome complex component rrp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rrp4 PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 6.8e-19
Identity = 50/126 (39.68%), Postives = 69/126 (54.76%), Query Frame = 0 

Query: 18  LKGHGTLDLNGEVVTTICGVVERVNKLIYVRALRAMLSMKSCNLVYLDDSLMFSFLRCIV 77
           ++GHGT   +G +  ++ G V+RVNKLI V+ LR+                         
Sbjct: 71  MRGHGTYFEDGGIYASVAGSVQRVNKLISVKPLRSK------------------------ 130

Query: 78  IISSLIYEPEIGDIVAGRVTEVAPKRWRLDIHFSQDAVLMLSSMNLPDGFQRRRTAVDEL 137
                 Y PEIGD++ G++ EV PKRW++DI   Q+AVLMLSS+NLP G QRR+   DEL
Sbjct: 131 ------YVPEIGDLIIGKIAEVQPKRWKVDIGAKQNAVLMLSSINLPGGIQRRKLETDEL 166

Query: 138 NIAEHF 144
            +   F
Sbjct: 191 QMRSFF 166

[Close]
BLAST of CsaV3_1G000270 vs. Swiss-Prot
Match: sp|Q2KID0|EXOS2_BOVIN (Exosome complex component RRP4 OS=Bos taurus OX=9913 GN=EXOSC2 PE=2 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.4e-16
Identity = 49/122 (40.16%), Postives = 67/122 (54.92%), Query Frame = 0 

Query: 16  GVLKGHGTLDLNGEVVTTICGVVERVNKLIYVRALRAMLSMKSCNLVYLDDSLMFSFLRC 75
           G ++GHGT     +++ ++ G VERVNKLI V+AL+                        
Sbjct: 38  GFMRGHGTYMGEEKLIASVAGSVERVNKLICVKALKTR---------------------- 97

Query: 76  IVIISSLIYEPEIGDIVAGRVTEVAPKRWRLDIHFSQDAVLMLSSMNLPDGFQRRRTAVD 135
                   Y  E+GDIV GR+TEV  KRW+++ +   D+VL+LSSMNLP G  RRR+A D
Sbjct: 98  --------YNGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAED 129

Query: 136 EL 138
           EL
Sbjct: 158 EL 129

[Close]
BLAST of CsaV3_1G000270 vs. Swiss-Prot
Match: sp|Q8VBV3|EXOS2_MOUSE (Exosome complex component RRP4 OS=Mus musculus OX=10090 GN=Exosc2 PE=1 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.4e-16
Identity = 49/122 (40.16%), Postives = 67/122 (54.92%), Query Frame = 0 

Query: 16  GVLKGHGTLDLNGEVVTTICGVVERVNKLIYVRALRAMLSMKSCNLVYLDDSLMFSFLRC 75
           G ++GHGT     +++ ++ G VERVNKLI V+AL+                        
Sbjct: 38  GFMRGHGTYMGEEKLIASVAGSVERVNKLICVKALKTR---------------------- 97

Query: 76  IVIISSLIYEPEIGDIVAGRVTEVAPKRWRLDIHFSQDAVLMLSSMNLPDGFQRRRTAVD 135
                   Y  E+GDIV GR+TEV  KRW+++ +   D+VL+LSSMNLP G  RRR+A D
Sbjct: 98  --------YNGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAED 129

Query: 136 EL 138
           EL
Sbjct: 158 EL 129

[Close]
BLAST of CsaV3_1G000270 vs. Swiss-Prot
Match: sp|Q13868|EXOS2_HUMAN (Exosome complex component RRP4 OS=Homo sapiens OX=9606 GN=EXOSC2 PE=1 SV=2)

HSP 1 Score: 86.3 bits (212), Expect = 3.2e-16
Identity = 49/122 (40.16%), Postives = 67/122 (54.92%), Query Frame = 0 

Query: 16  GVLKGHGTLDLNGEVVTTICGVVERVNKLIYVRALRAMLSMKSCNLVYLDDSLMFSFLRC 75
           G ++GHGT     +++ ++ G VERVNKLI V+AL+                        
Sbjct: 38  GFMRGHGTYMGEEKLIASVAGSVERVNKLICVKALKTR---------------------- 97

Query: 76  IVIISSLIYEPEIGDIVAGRVTEVAPKRWRLDIHFSQDAVLMLSSMNLPDGFQRRRTAVD 135
                   Y  E+GDIV GR+TEV  KRW+++ +   D+VL+LSSMNLP G  RRR+A D
Sbjct: 98  --------YIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAED 129

Query: 136 EL 138
           EL
Sbjct: 158 EL 129

[Close]
BLAST of CsaV3_1G000270 vs. TrEMBL
Match: tr|A0A1S3CLC6|A0A1S3CLC6_CUCME (exosome complex component RRP4 homolog OS=Cucumis melo OX=3656 GN=LOC103502293 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 5.0e-43
Identity = 95/140 (67.86%), Postives = 102/140 (72.86%), Query Frame = 0 

Query: 4   AVSDTLPLNYKDGVLKGHGTLDLNGEVVTTICGVVERVNKLIYVRALRAMLSMKSCNLVY 63
           AV DT+P +Y+DGVLKGHGTLDLNGEVVTTICGVVERVNKLIYVR+LRA           
Sbjct: 37  AVGDTVPFSYEDGVLKGHGTLDLNGEVVTTICGVVERVNKLIYVRSLRAR---------- 96

Query: 64  LDDSLMFSFLRCIVIISSLIYEPEIGDIVAGRVTEVAPKRWRLDIHFSQDAVLMLSSMNL 123
                               Y+PEIGDIV GRVTEVAPKRWRLDIH+SQDAVLMLSSMNL
Sbjct: 97  --------------------YKPEIGDIVVGRVTEVAPKRWRLDIHYSQDAVLMLSSMNL 146

Query: 124 PDGFQRRRTAVDELNIAEHF 144
           PDG QRRRTAVDELN+   F
Sbjct: 157 PDGIQRRRTAVDELNMRSIF 146

[Close]
BLAST of CsaV3_1G000270 vs. TrEMBL
Match: tr|A0A1S3B5H2|A0A1S3B5H2_CUCME (exosome complex component RRP4 homolog isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486036 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 3.2e-42
Identity = 93/139 (66.91%), Postives = 102/139 (73.38%), Query Frame = 0 

Query: 5   VSDTLPLNYKDGVLKGHGTLDLNGEVVTTICGVVERVNKLIYVRALRAMLSMKSCNLVYL 64
           V+DT+PLNY+DGVLKGHGTLDLNGEVV +ICGVVERVNKLIYVRALRA            
Sbjct: 52  VADTIPLNYEDGVLKGHGTLDLNGEVVASICGVVERVNKLIYVRALRAR----------- 111

Query: 65  DDSLMFSFLRCIVIISSLIYEPEIGDIVAGRVTEVAPKRWRLDIHFSQDAVLMLSSMNLP 124
                              Y+PE+GDIV GRVTEVAPKRWRLDI++SQDAVLMLSSMNLP
Sbjct: 112 -------------------YKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLMLSSMNLP 160

Query: 125 DGFQRRRTAVDELNIAEHF 144
           DG QRRRTAVDELN+   F
Sbjct: 172 DGIQRRRTAVDELNMRSIF 160

[Close]
BLAST of CsaV3_1G000270 vs. TrEMBL
Match: tr|A0A1S3B4T9|A0A1S3B4T9_CUCME (exosome complex component RRP4 homolog isoform X2 OS=Cucumis melo OX=3656 GN=LOC103486036 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 3.2e-42
Identity = 93/139 (66.91%), Postives = 102/139 (73.38%), Query Frame = 0 

Query: 5   VSDTLPLNYKDGVLKGHGTLDLNGEVVTTICGVVERVNKLIYVRALRAMLSMKSCNLVYL 64
           V+DT+PLNY+DGVLKGHGTLDLNGEVV +ICGVVERVNKLIYVRALRA            
Sbjct: 38  VADTIPLNYEDGVLKGHGTLDLNGEVVASICGVVERVNKLIYVRALRAR----------- 97

Query: 65  DDSLMFSFLRCIVIISSLIYEPEIGDIVAGRVTEVAPKRWRLDIHFSQDAVLMLSSMNLP 124
                              Y+PE+GDIV GRVTEVAPKRWRLDI++SQDAVLMLSSMNLP
Sbjct: 98  -------------------YKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLMLSSMNLP 146

Query: 125 DGFQRRRTAVDELNIAEHF 144
           DG QRRRTAVDELN+   F
Sbjct: 158 DGIQRRRTAVDELNMRSIF 146

[Close]
BLAST of CsaV3_1G000270 vs. TrEMBL
Match: tr|F6HQ49|F6HQ49_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_07s0104g00700 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 6.1e-41
Identity = 88/140 (62.86%), Postives = 101/140 (72.14%), Query Frame = 0 

Query: 4   AVSDTLPLNYKDGVLKGHGTLDLNGEVVTTICGVVERVNKLIYVRALRAMLSMKSCNLVY 63
           AV+DT+P+NY+DGVLKGHGTLDL+GEVV T+CGVVERVNKL+Y+R LRA           
Sbjct: 37  AVADTIPVNYEDGVLKGHGTLDLDGEVVATLCGVVERVNKLVYIRTLRAR---------- 96

Query: 64  LDDSLMFSFLRCIVIISSLIYEPEIGDIVAGRVTEVAPKRWRLDIHFSQDAVLMLSSMNL 123
                               Y+PE GDI+ GRVTE+APKRWRLDI+FSQDAVLMLSSMNL
Sbjct: 97  --------------------YKPETGDIIVGRVTEIAPKRWRLDINFSQDAVLMLSSMNL 146

Query: 124 PDGFQRRRTAVDELNIAEHF 144
           PDG QRRRTAVDELN+   F
Sbjct: 157 PDGIQRRRTAVDELNMRSIF 146

[Close]
BLAST of CsaV3_1G000270 vs. TrEMBL
Match: tr|A0A2N9GW15|A0A2N9GW15_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS31575 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.8e-40
Identity = 86/140 (61.43%), Postives = 102/140 (72.86%), Query Frame = 0 

Query: 4   AVSDTLPLNYKDGVLKGHGTLDLNGEVVTTICGVVERVNKLIYVRALRAMLSMKSCNLVY 63
           A++D++P+N++DGVLKGHGTLDLNGEVV T+CGVVERVNKL+Y+RALRA           
Sbjct: 37  AIADSIPVNHEDGVLKGHGTLDLNGEVVATLCGVVERVNKLVYIRALRAR---------- 96

Query: 64  LDDSLMFSFLRCIVIISSLIYEPEIGDIVAGRVTEVAPKRWRLDIHFSQDAVLMLSSMNL 123
                               Y+PE+GDI+ GRV+EVA KRWRLDIH+SQDAVLMLSSMNL
Sbjct: 97  --------------------YKPEVGDIIVGRVSEVAQKRWRLDIHYSQDAVLMLSSMNL 146

Query: 124 PDGFQRRRTAVDELNIAEHF 144
           PDG QRRRTAVDELN+   F
Sbjct: 157 PDGIQRRRTAVDELNMRSIF 146

The following BLAST results are available for this feature:
BLAST of CsaV3_1G000270 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008464390.17.6e-4367.86PREDICTED: exosome complex component RRP4 homolog [Cucumis melo][more]
XP_022931250.12.9e-4266.91exosome complex component RRP4 homolog [Cucurbita moschata] >XP_022931251.1 exos... [more]
XP_023533481.12.9e-4266.91exosome complex component RRP4 homolog [Cucurbita pepo subsp. pepo] >XP_02353348... [more]
XP_008442058.14.9e-4266.91PREDICTED: exosome complex component RRP4 homolog isoform X1 [Cucumis melo] >XP_... [more]
XP_008442061.14.9e-4266.91PREDICTED: exosome complex component RRP4 homolog isoform X2 [Cucumis melo] >XP_... [more]
BLAST of CsaV3_1G000270 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G03360.11.1e-3550.71ribosomal RNA processing 4[more]
BLAST of CsaV3_1G000270 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9ZVT7|RRP4_ARATH2.0e-3450.71Exosome complex component RRP4 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP4 P... [more]
sp|Q09704|RRP4_SCHPO6.8e-1939.68Exosome complex component rrp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 2... [more]
sp|Q2KID0|EXOS2_BOVIN1.4e-1640.16Exosome complex component RRP4 OS=Bos taurus OX=9913 GN=EXOSC2 PE=2 SV=1[more]
sp|Q8VBV3|EXOS2_MOUSE1.4e-1640.16Exosome complex component RRP4 OS=Mus musculus OX=10090 GN=Exosc2 PE=1 SV=1[more]
sp|Q13868|EXOS2_HUMAN3.2e-1640.16Exosome complex component RRP4 OS=Homo sapiens OX=9606 GN=EXOSC2 PE=1 SV=2[more]
BLAST of CsaV3_1G000270 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3CLC6|A0A1S3CLC6_CUCME5.0e-4367.86exosome complex component RRP4 homolog OS=Cucumis melo OX=3656 GN=LOC103502293 P... [more]
tr|A0A1S3B5H2|A0A1S3B5H2_CUCME3.2e-4266.91exosome complex component RRP4 homolog isoform X1 OS=Cucumis melo OX=3656 GN=LOC... [more]
tr|A0A1S3B4T9|A0A1S3B4T9_CUCME3.2e-4266.91exosome complex component RRP4 homolog isoform X2 OS=Cucumis melo OX=3656 GN=LOC... [more]
tr|F6HQ49|F6HQ49_VITVI6.1e-4162.86Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_07s0104g00700 PE=4 SV=... [more]
tr|A0A2N9GW15|A0A2N9GW15_FAGSY1.8e-4061.43Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS31575 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0000178exosome (RNase complex)
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR026699Exosome_RNA_bind1/RRP40/RRP4
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0000460 maturation of 5.8S rRNA
biological_process GO:0043628 ncRNA 3'-end processing
biological_process GO:0071046 nuclear polyadenylation-dependent ncRNA catabolic process
biological_process GO:0000291 nuclear-transcribed mRNA catabolic process, exonucleolytic
cellular_component GO:0000178 exosome (RNase complex)
cellular_component GO:0005737 cytoplasm
cellular_component GO:0031981 nuclear lumen
molecular_function GO:0003723 RNA binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G000270.1CsaV3_1G000270.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3DG3DSA:2.40.50.100coord: 5..53
e-value: 4.0E-12
score: 47.5
NoneNo IPR availableGENE3DG3DSA:2.40.50.140coord: 82..144
e-value: 4.0E-10
score: 41.6
NoneNo IPR availablePANTHERPTHR21321:SF4EXOSOME COMPLEX COMPONENT RRP4coord: 80..143
coord: 7..52
NoneNo IPR availableSUPERFAMILYSSF110324Ribosomal L27 protein-likecoord: 11..49
IPR026699Exosome complex RNA-binding protein 1/RRP40/RRP4PANTHERPTHR21321PNAS-3 RELATEDcoord: 7..52
IPR026699Exosome complex RNA-binding protein 1/RRP40/RRP4PANTHERPTHR21321PNAS-3 RELATEDcoord: 80..143
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILYSSF50249Nucleic acid-binding proteinscoord: 82..143

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G000270Cucsa.157090Cucumber (Gy14) v1cgycucB236
CsaV3_1G000270CsGy1G000280Cucumber (Gy14) v2cgybcucB002
CsaV3_1G000270Cla019303Watermelon (97103) v1cucwmB105
CsaV3_1G000270MELO3C026181Melon (DHL92) v3.5.1cucmeB053
CsaV3_1G000270Lsi06G016650Bottle gourd (USVL1VR-Ls)cuclsiB081
CsaV3_1G000270MELO3C026181.2Melon (DHL92) v3.6.1cucmedB050
CsaV3_1G000270Cla97C06G127930Watermelon (97103) v2cucwmbB076
CsaV3_1G000270Bhi02G000491Wax gourdcucwgoB087
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G000270Watermelon (97103) v2cucwmbB048
CsaV3_1G000270Wax gourdcucwgoB062
CsaV3_1G000270Cucumber (Chinese Long) v3cuccucB003
CsaV3_1G000270Cucumber (Chinese Long) v3cuccucB017
CsaV3_1G000270Silver-seed gourdcarcucB0395
CsaV3_1G000270Silver-seed gourdcarcucB0643
CsaV3_1G000270Cucumber (Gy14) v2cgybcucB010
CsaV3_1G000270Cucumber (Gy14) v2cgybcucB101
CsaV3_1G000270Cucurbita maxima (Rimu)cmacucB0058
CsaV3_1G000270Cucurbita maxima (Rimu)cmacucB0100
CsaV3_1G000270Cucurbita maxima (Rimu)cmacucB0117
CsaV3_1G000270Cucurbita maxima (Rimu)cmacucB0256
CsaV3_1G000270Cucurbita maxima (Rimu)cmacucB0472
CsaV3_1G000270Cucurbita moschata (Rifu)cmocucB0044
CsaV3_1G000270Cucurbita moschata (Rifu)cmocucB0243
CsaV3_1G000270Cucurbita moschata (Rifu)cmocucB0091
CsaV3_1G000270Cucurbita moschata (Rifu)cmocucB0094
CsaV3_1G000270Cucurbita moschata (Rifu)cmocucB0470
CsaV3_1G000270Cucurbita pepo (Zucchini)cpecucB0029
CsaV3_1G000270Cucurbita pepo (Zucchini)cpecucB0442
CsaV3_1G000270Cucurbita pepo (Zucchini)cpecucB0630
CsaV3_1G000270Cucurbita pepo (Zucchini)cpecucB0804
CsaV3_1G000270Cucurbita pepo (Zucchini)cpecucB0814
CsaV3_1G000270Wild cucumber (PI 183967)cpicucB001
CsaV3_1G000270Wild cucumber (PI 183967)cpicucB014
CsaV3_1G000270Wild cucumber (PI 183967)cpicucB126
CsaV3_1G000270Bottle gourd (USVL1VR-Ls)cuclsiB039
CsaV3_1G000270Melon (DHL92) v3.5.1cucmeB019
CsaV3_1G000270Melon (DHL92) v3.5.1cucmeB084
CsaV3_1G000270Melon (DHL92) v3.6.1cucmedB017
CsaV3_1G000270Melon (DHL92) v3.6.1cucmedB077
CsaV3_1G000270Watermelon (Charleston Gray)cucwcgB056
CsaV3_1G000270Watermelon (Charleston Gray)cucwcgB088
CsaV3_1G000270Watermelon (97103) v1cucwmB032