CsaV3_1G000120 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G000120
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr1 : 108352 .. 108666 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCGTGATGTGGCAAATGACATCCTCCTCCTCAAGCTCCTATCATCTCTCAACTGTGTGAACCTCGGCCCACCCTTCGTACTCTTTGCTTCCTCGCCTGAAATTTTATCCACGCCTCCTTCTACGACTCAAACAATGCACTGTAGTCTCATTAAATTGGAGAAGAGCGATATTCACAAGAGCACCAGCACCAGCACCACATTCTTCAATAAAAATAAAAATGTCTTGCCAAGGACCAACTTCAATAGTCAATACACAATAACACCCTTTTTGTGTTCAATCTCTCTCTCGAGACCAGCGAAGGCCTTTTAA

mRNA sequence

ATGGAGCGTGATGTGGCAAATGACATCCTCCTCCTCAAGCTCCTATCATCTCTCAACTGTGTGAACCTCGGCCCACCCTTCGTACTCTTTGCTTCCTCGCCTGAAATTTTATCCACGCCTCCTTCTACGACTCAAACAATGCACTGTAGTCTCATTAAATTGGAGAAGAGCGATATTCACAAGAGCACCAGCACCAGCACCACATTCTTCAATAAAAATAAAAATGTCTTGCCAAGGACCAACTTCAATAGTCAATACACAATAACACCCTTTTTGTGTTCAATCTCTCTCTCGAGACCAGCGAAGGCCTTTTAA

Coding sequence (CDS)

ATGGAGCGTGATGTGGCAAATGACATCCTCCTCCTCAAGCTCCTATCATCTCTCAACTGTGTGAACCTCGGCCCACCCTTCGTACTCTTTGCTTCCTCGCCTGAAATTTTATCCACGCCTCCTTCTACGACTCAAACAATGCACTGTAGTCTCATTAAATTGGAGAAGAGCGATATTCACAAGAGCACCAGCACCAGCACCACATTCTTCAATAAAAATAAAAATGTCTTGCCAAGGACCAACTTCAATAGTCAATACACAATAACACCCTTTTTGTGTTCAATCTCTCTCTCGAGACCAGCGAAGGCCTTTTAA

Protein sequence

MERDVANDILLLKLLSSLNCVNLGPPFVLFASSPEILSTPPSTTQTMHCSLIKLEKSDIHKSTSTSTTFFNKNKNVLPRTNFNSQYTITPFLCSISLSRPAKAF
Homology
[Close]
BLAST of CsaV3_1G000120 vs. NCBI nr
Match: KGN63438.1 (hypothetical protein Csa_1G000620 [Cucumis sativus])

HSP 1 Score: 204.9 bits (520), Expect = 1.3e-49
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0 

Query: 1   MERDVANDILLLKLLSSLNCVNLGPPFVLFASSPEILSTPPSTTQTMHCSLIKLEKSDIH 60
           MERDVANDILLLKLLSSLNCVNLGPPFVLFASSPEILSTPPSTTQTMHCSLIKLEKSDIH
Sbjct: 1   MERDVANDILLLKLLSSLNCVNLGPPFVLFASSPEILSTPPSTTQTMHCSLIKLEKSDIH 60

Query: 61  KSTSTSTTFFNKNKNVLPRTNFNSQYTITPFLCSISLSRPAKAF 105
           KSTSTSTTFFNKNKNVLPRTNFNSQYTITPFLCSISLSRPAKAF
Sbjct: 61  KSTSTSTTFFNKNKNVLPRTNFNSQYTITPFLCSISLSRPAKAF 104

[Close]
BLAST of CsaV3_1G000120 vs. TrEMBL
Match: tr|A0A0A0LNQ9|A0A0A0LNQ9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G000620 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 8.8e-50
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0 

Query: 1   MERDVANDILLLKLLSSLNCVNLGPPFVLFASSPEILSTPPSTTQTMHCSLIKLEKSDIH 60
           MERDVANDILLLKLLSSLNCVNLGPPFVLFASSPEILSTPPSTTQTMHCSLIKLEKSDIH
Sbjct: 1   MERDVANDILLLKLLSSLNCVNLGPPFVLFASSPEILSTPPSTTQTMHCSLIKLEKSDIH 60

Query: 61  KSTSTSTTFFNKNKNVLPRTNFNSQYTITPFLCSISLSRPAKAF 105
           KSTSTSTTFFNKNKNVLPRTNFNSQYTITPFLCSISLSRPAKAF
Sbjct: 61  KSTSTSTTFFNKNKNVLPRTNFNSQYTITPFLCSISLSRPAKAF 104

The following BLAST results are available for this feature:
BLAST of CsaV3_1G000120 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN63438.11.3e-49100.00hypothetical protein Csa_1G000620 [Cucumis sativus][more]
BLAST of CsaV3_1G000120 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G000120 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_1G000120 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LNQ9|A0A0A0LNQ9_CUCSA8.8e-50100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G000620 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G000120.1CsaV3_1G000120.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G000120Cucumber (Chinese Long) v3cuccucB003
CsaV3_1G000120Cucumber (Chinese Long) v3cuccucB017
CsaV3_1G000120Silver-seed gourdcarcucB0395
CsaV3_1G000120Silver-seed gourdcarcucB0643
CsaV3_1G000120Melon (DHL92) v3.5.1cucmeB053
CsaV3_1G000120Cucumber (Gy14) v2cgybcucB002
CsaV3_1G000120Cucumber (Gy14) v2cgybcucB010
CsaV3_1G000120Cucumber (Gy14) v2cgybcucB101
CsaV3_1G000120Cucumber (Gy14) v1cgycucB236
CsaV3_1G000120Cucurbita maxima (Rimu)cmacucB0058
CsaV3_1G000120Cucurbita maxima (Rimu)cmacucB0100
CsaV3_1G000120Cucurbita maxima (Rimu)cmacucB0256
CsaV3_1G000120Cucurbita moschata (Rifu)cmocucB0044
CsaV3_1G000120Cucurbita moschata (Rifu)cmocucB0243
CsaV3_1G000120Cucurbita moschata (Rifu)cmocucB0091
CsaV3_1G000120Cucurbita pepo (Zucchini)cpecucB0442
CsaV3_1G000120Cucurbita pepo (Zucchini)cpecucB0630
CsaV3_1G000120Cucurbita pepo (Zucchini)cpecucB0814
CsaV3_1G000120Wild cucumber (PI 183967)cpicucB001
CsaV3_1G000120Wild cucumber (PI 183967)cpicucB014
CsaV3_1G000120Wild cucumber (PI 183967)cpicucB126
CsaV3_1G000120Bottle gourd (USVL1VR-Ls)cuclsiB039
CsaV3_1G000120Bottle gourd (USVL1VR-Ls)cuclsiB081
CsaV3_1G000120Melon (DHL92) v3.5.1cucmeB019
CsaV3_1G000120Melon (DHL92) v3.5.1cucmeB084
CsaV3_1G000120Melon (DHL92) v3.6.1cucmedB017
CsaV3_1G000120Melon (DHL92) v3.6.1cucmedB050
CsaV3_1G000120Melon (DHL92) v3.6.1cucmedB077
CsaV3_1G000120Watermelon (Charleston Gray)cucwcgB056
CsaV3_1G000120Watermelon (Charleston Gray)cucwcgB088
CsaV3_1G000120Watermelon (97103) v1cucwmB032
CsaV3_1G000120Watermelon (97103) v1cucwmB105
CsaV3_1G000120Watermelon (97103) v2cucwmbB048
CsaV3_1G000120Watermelon (97103) v2cucwmbB076
CsaV3_1G000120Wax gourdcucwgoB062
CsaV3_1G000120Wax gourdcucwgoB087