Csa7G448700 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa7G448700
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionDormancy/auxin associated family protein; contains IPR008406 (Dormancyauxin associated)
LocationChr7 : 18330927 .. 18332415 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGAGAAACCTTTATTAGTTTTGTTTCCCTCCAAATGTTCTTACGCTTGTACCGCGAAGAACCCTAGAAAATCCTTTCTCCTTCTCCTTCGCGTTTCCGATTTTGGATTGTCATTGTCGTTCTTTGCCGGTGCATTTGTTTTCTGTTCGATCAACAACAGAATTCTCCAAATTCTGCATATTCTATTTTGTATAATTCTTTGTTTTCGTCTTCTCATCTCTTGCTAACAAGGAAACCATGAGTTCCTTTCTTCACAAACTATGGGACGAAACGCTTGCTGGCCCTACGCCAGACAATGGCCTCGGAAAGCTTCGAAAGTATGATCCCGTTTCGGCTTCGGAATCGTCTTCGGTTAAGATTTCCGGGGACGTTCCTGTAACGCGGAGTATCACCATTCTGAGGAGGAGAAACTATGATTTCAGGAACTTAGCGGATGATCGTGATGGAAGGATGATCGACTCGCCGCGGACGCCTCTAACTCGTGAGTTTCTCTTTGTTTTTAGATCTATCGGATTTCTTTTTCCTGTCTATTTGTGGTTAATGTATGCTTATTCATATATTTTATGTGTTTCATTTGGAAATCACCTGCGTAGATTGTGTGTTGCATGGAAATTTGAAGAAATTAATTCGGTTATTTGATGAGTTTCTTATATGTGTAATTTTGTTTTGTTTCTTCTGTTCCTTGCAGCGGGGACGCCCGATCTTGATGGTGATCTGAAGAGGATTCCGTGGAAAAGATTGTCGGCTGAATCATTTGAACATGACGATTAGAAGTAATGAATTTAAACATTTAGTTTCTTTATTCACGTATCCCTCGTTCACATCCAATCAATTTGCATCGTCTAATGTACACGGATTTGTATGCATCGTTTCTTCATTTTGATAGAAATGAGATTTAAGAAGATATGTTTTCAATAGATGGATTCCTCTTTAGAATGCACTTACTAACGTTCTCTTTCGTTAGACTTGAATCATACACTATAAAATACATTGGTTCATAATCCAATGAAAGGGAAAATGTCCGTCAAATGCTTTTAGAAGAAAATGCAATTAGGGTATAGTATATGGTTTATTATCTTTGAGTTACTAAATGAATTTCTTCCTTCTAGTTTTCTTAAGAAATATAGAAAATGAAATCTGTTTCTATCCTAGAAGAAAAGACACCGTTTCTTTCAGATCCTGTAGTTTTCCTCTGTTGATAGATATTTCAAAAGGGCATAATCAAGATTGTTCTATATTTTTGTGAATTATTGTGGAATCTGTATAAGATTAACCTTTAGTCTTTGCATTTGTTGCAGGACGCCGATTACAGTCTCATTGTCGATTCAACCATTGAAGGGGAAGCAGCCAAGTATCTGTATATAAGATATGTATCTATGCATGTGTGTGTGTATGTATGTATGTATGTAAATAATACCAGCCAACCTAGCTACAGTTCTTCAATCCACCCGTTGGCATTAAAATTTATGCTTCGAGAGGGAGGTTGAATT

mRNA sequence

ATGAGTTCCTTTCTTCACAAACTATGGGACGAAACGCTTGCTGGCCCTACGCCAGACAATGGCCTCGGAAAGCTTCGAAAGTATGATCCCGTTTCGGCTTCGGAATCGTCTTCGGTTAAGATTTCCGGGGACGTTCCTGTAACGCGGAGTATCACCATTCTGAGGAGGAGAAACTATGATTTCAGGAACTTAGCGGATGATCGTGATGGAAGGATGATCGACTCGCCGCGGACGCCTCTAACTCCGGGGACGCCCGATCTTGATGGTGATCTGAAGAGGATTCCGTGGAAAAGATTGTCGGCTGAATCATTTGAACATGACGATTAG

Coding sequence (CDS)

ATGAGTTCCTTTCTTCACAAACTATGGGACGAAACGCTTGCTGGCCCTACGCCAGACAATGGCCTCGGAAAGCTTCGAAAGTATGATCCCGTTTCGGCTTCGGAATCGTCTTCGGTTAAGATTTCCGGGGACGTTCCTGTAACGCGGAGTATCACCATTCTGAGGAGGAGAAACTATGATTTCAGGAACTTAGCGGATGATCGTGATGGAAGGATGATCGACTCGCCGCGGACGCCTCTAACTCCGGGGACGCCCGATCTTGATGGTGATCTGAAGAGGATTCCGTGGAAAAGATTGTCGGCTGAATCATTTGAACATGACGATTAG

Protein sequence

MSSFLHKLWDETLAGPTPDNGLGKLRKYDPVSASESSSVKISGDVPVTRSITILRRRNYDFRNLADDRDGRMIDSPRTPLTPGTPDLDGDLKRIPWKRLSAESFEHDD*
Homology
[Close]
BLAST of Csa7G448700 vs. Swiss-Prot
Match: DRMH4_ARATH (Dormancy-associated protein homolog 4 OS=Arabidopsis thaliana GN=At1g54070 PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.0e-16
Identity = 49/86 (56.98%), Postives = 53/86 (61.63%), Query Frame = 1 

Query: 4  FLHKLWDETLAGPTPDNGLGKLRKYDPVSASESSSVKISGDVPVTRSITILRRRN--YDF 63
          FLHKLWDET+AGPTPDNGLGKLRK+D +S   SS   +S D  VTRSI + +  N     
Sbjct: 3  FLHKLWDETVAGPTPDNGLGKLRKHDSLSTVRSSPPSLSSD-QVTRSIMVTKGNNNVRGL 62

Query: 64 RNLADDRDGRMIDS--PRTPLTPGTP 86
          R L  D D     S  P TPLTPGTP
Sbjct: 63 RKLKMDPDSPTCSSSNPGTPLTPGTP 87

[Close]
BLAST of Csa7G448700 vs. Swiss-Prot
Match: DRMH3_ARATH (Dormancy-associated protein homolog 3 OS=Arabidopsis thaliana GN=At1g56220 PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 2.8e-06
Identity = 39/117 (33.33%), Postives = 55/117 (47.01%), Query Frame = 1 

Query: 5   LHKLWDETLAGPTPDNGLGKLRKYDPVS--------ASESSSVKISGD-------VPVTR 64
           L  LWD+T+AGP P+NGLGKLRK+   S         SE+ S +  G+       V VTR
Sbjct: 4   LDHLWDDTVAGPRPENGLGKLRKHHTFSFRPSSGNDQSEAGSARSYGEDSLPEEAVKVTR 63

Query: 65  SITILRRRNYDFRNLADDRDGRMIDSPRTPLTPGTPDLDGDLKRIPWKRLS-AESFE 106
           SI I++   Y   +      G     P +P +P      G  +   ++R S +++FE
Sbjct: 64  SIMIIKPPGYQGSSAPASPAGS--TPPLSPFSPPLSPFSGGKEPFRFRRRSTSDAFE 118

[Close]
BLAST of Csa7G448700 vs. TrEMBL
Match: A0A0A0K9D5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G448700 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 6.0e-56
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1 

Query: 1   MSSFLHKLWDETLAGPTPDNGLGKLRKYDPVSASESSSVKISGDVPVTRSITILRRRNYD 60
           MSSFLHKLWDETLAGPTPDNGLGKLRKYDPVSASESSSVKISGDVPVTRSITILRRRNYD
Sbjct: 1   MSSFLHKLWDETLAGPTPDNGLGKLRKYDPVSASESSSVKISGDVPVTRSITILRRRNYD 60

Query: 61  FRNLADDRDGRMIDSPRTPLTPGTPDLDGDLKRIPWKRLSAESFEHDD 109
           FRNLADDRDGRMIDSPRTPLTPGTPDLDGDLKRIPWKRLSAESFEHDD
Sbjct: 61  FRNLADDRDGRMIDSPRTPLTPGTPDLDGDLKRIPWKRLSAESFEHDD 108

[Close]
BLAST of Csa7G448700 vs. TrEMBL
Match: V4SM75_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026754mg PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 7.7e-19
Identity = 61/111 (54.95%), Postives = 72/111 (64.86%), Query Frame = 1 

Query: 4   FLHKLWDETLAGPTPDNGLGKLRKYDPVSASESSS------VKISGDVPVTRSITILRR- 63
           FLHKLWDETLAGPTPD+GLGKLRKYD  S+S SS+      V     V ++RSITILR  
Sbjct: 3   FLHKLWDETLAGPTPDSGLGKLRKYDSFSSSSSSASRPRPVVADHDHVVISRSITILRTD 62

Query: 64  RNYDFRNLADD--RDGRMIDSPRTPLTPGTPDLDGDLKRIPWKRLSAESFE 106
            N +FRNL+ D         SPRTPLTPGTP   GD KR   ++  A++ E
Sbjct: 63  ANSNFRNLSGDPGSPSGSCSSPRTPLTPGTP--PGDFKRFTRRKPLAQALE 111

[Close]
BLAST of Csa7G448700 vs. TrEMBL
Match: M5XH52_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013609mg PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.2e-16
Identity = 52/103 (50.49%), Postives = 70/103 (67.96%), Query Frame = 1 

Query: 4   FLHKLWDETLAGPTPDNGLGKLRKYDPVSASESSSVKISGDVPVTRSITILRRRNYDFRN 63
           FLHKLWDETLAGP P+ GLGKLRK+D +S S +S   +  +VPVTRSITILR  +  F N
Sbjct: 3   FLHKLWDETLAGPAPETGLGKLRKFDSLS-SPASPTMVCDEVPVTRSITILRTTSSTFGN 62

Query: 64  LADDRDGRMIDSPRTPLTPGTPDLDGDL-KRIPWKRLSAESFE 106
           L+ +  G   +SP TP TP +P   G + K++  ++ SA++ E
Sbjct: 63  LSPN-SGSPSESPTTPGTPKSPGTPGAMTKKLTRRKSSADALE 103

[Close]
BLAST of Csa7G448700 vs. TrEMBL
Match: A9PIW6_9ROSI (Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 8.0e-16
Identity = 56/108 (51.85%), Postives = 71/108 (65.74%), Query Frame = 1 

Query: 4   FLHKLWDETLAGPTPDNGLGKLRKYD--PVSAS---ESSSVKISGDVPVTRSITILRRRN 63
           FLHKLWDETLAGP PD GLGKLRKY+  PV +S    +SS   +G++ VTRSITI+R  +
Sbjct: 3   FLHKLWDETLAGPMPDTGLGKLRKYNSFPVRSSPPVNASSANSNGEMNVTRSITIIRTNS 62

Query: 64  YDFRNLADDRDGRMIDSPR------TPLTPGTPDLDGDLKRIPWKRLS 101
            + RNL+ D  G   +SP       TPLTPGTP   GD +R+  ++ S
Sbjct: 63  SNLRNLSVD-PGSAPESPAPPSTPGTPLTPGTP--RGDFRRMTSRKSS 107

[Close]
BLAST of Csa7G448700 vs. TrEMBL
Match: A0A067L0B1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24657 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.0e-15
Identity = 54/122 (44.26%), Postives = 71/122 (58.20%), Query Frame = 1 

Query: 4   FLHKLWDETLAGPTPDNGLGKLRKYD--------PVSASESSSVKISGDVPVTRSITILR 63
           FLHKLWDETLAGP P++GLGKLRKYD        P S+ E      + D+P+TRSITILR
Sbjct: 3   FLHKLWDETLAGPMPESGLGKLRKYDSFSGATGAPRSSPEPVFPHHNEDLPITRSITILR 62

Query: 64  RRNYDFRNLADDRDGRMIDSPRTPLTPGTPDL-------------DGDLKRIPWKRLSAE 105
             + +F+N++ D  G   DSP TP TP TP                G+ KR+  ++ S +
Sbjct: 63  TNSNNFKNISLD-PGSAPDSPCTPRTPSTPRTPSTPRNPFSPGTPSGEFKRLTRRKSSMD 122

[Close]
BLAST of Csa7G448700 vs. TAIR10
Match: AT1G54070.1 (AT1G54070.1 Dormancy/auxin associated family protein)

HSP 1 Score: 85.9 bits (211), Expect = 1.7e-17
Identity = 49/86 (56.98%), Postives = 53/86 (61.63%), Query Frame = 1 

Query: 4  FLHKLWDETLAGPTPDNGLGKLRKYDPVSASESSSVKISGDVPVTRSITILRRRN--YDF 63
          FLHKLWDET+AGPTPDNGLGKLRK+D +S   SS   +S D  VTRSI + +  N     
Sbjct: 3  FLHKLWDETVAGPTPDNGLGKLRKHDSLSTVRSSPPSLSSD-QVTRSIMVTKGNNNVRGL 62

Query: 64 RNLADDRDGRMIDS--PRTPLTPGTP 86
          R L  D D     S  P TPLTPGTP
Sbjct: 63 RKLKMDPDSPTCSSSNPGTPLTPGTP 87

[Close]
BLAST of Csa7G448700 vs. TAIR10
Match: AT1G56220.3 (AT1G56220.3 Dormancy/auxin associated family protein)

HSP 1 Score: 50.8 bits (120), Expect = 6.0e-07
Identity = 36/98 (36.73%), Postives = 46/98 (46.94%), Query Frame = 1 

Query: 5  LHKLWDETLAGPTPDNGLGKLRKYDPVS--------ASESSSVKISGD-------VPVTR 64
          L  LWD+T+AGP P+NGLGKLRK+   S         SE+ S +  G+       V VTR
Sbjct: 4  LDHLWDDTVAGPRPENGLGKLRKHHTFSFRPSSGNDQSEAGSARSYGEDSLPEEAVKVTR 63

Query: 65 SITILRRRNYDFRNLADDRDGRMIDSPRTPLTPGTPDL 88
          SI I++   Y   +      G        PL+P +P L
Sbjct: 64 SIMIIKPPGYQGSSAPASPAG-----STPPLSPFSPPL 96

[Close]
BLAST of Csa7G448700 vs. NCBI nr
Match: gi|778730509|ref|XP_011659802.1| (PREDICTED: uncharacterized protein LOC101208956 [Cucumis sativus])

HSP 1 Score: 224.6 bits (571), Expect = 8.7e-56
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1 

Query: 1   MSSFLHKLWDETLAGPTPDNGLGKLRKYDPVSASESSSVKISGDVPVTRSITILRRRNYD 60
           MSSFLHKLWDETLAGPTPDNGLGKLRKYDPVSASESSSVKISGDVPVTRSITILRRRNYD
Sbjct: 1   MSSFLHKLWDETLAGPTPDNGLGKLRKYDPVSASESSSVKISGDVPVTRSITILRRRNYD 60

Query: 61  FRNLADDRDGRMIDSPRTPLTPGTPDLDGDLKRIPWKRLSAESFEHDD 109
           FRNLADDRDGRMIDSPRTPLTPGTPDLDGDLKRIPWKRLSAESFEHDD
Sbjct: 61  FRNLADDRDGRMIDSPRTPLTPGTPDLDGDLKRIPWKRLSAESFEHDD 108

[Close]
BLAST of Csa7G448700 vs. NCBI nr
Match: gi|659124631|ref|XP_008462264.1| (PREDICTED: uncharacterized protein LOC103500664 [Cucumis melo])

HSP 1 Score: 200.3 bits (508), Expect = 1.7e-48
Identity = 94/108 (87.04%), Postives = 100/108 (92.59%), Query Frame = 1 

Query: 1   MSSFLHKLWDETLAGPTPDNGLGKLRKYDPVSASESSSVKISGDVPVTRSITILRRRNYD 60
           M++FLHK+WDETLAGPTPDNGLGKLRKYDPVSASES  VKI+GDVPVTRSITILRRRNYD
Sbjct: 1   MTTFLHKIWDETLAGPTPDNGLGKLRKYDPVSASESPPVKIAGDVPVTRSITILRRRNYD 60

Query: 61  FRNLADDRDGRMIDSPRTPLTPGTPDLDGDLKRIPWKRLSAESFEHDD 109
             N +DDRDGRMIDSPRTPLTPGTPD DGDLKR PWKRLSAESF+ DD
Sbjct: 61  LGNFSDDRDGRMIDSPRTPLTPGTPDPDGDLKRFPWKRLSAESFDQDD 108

[Close]
BLAST of Csa7G448700 vs. NCBI nr
Match: gi|568822842|ref|XP_006465835.1| (PREDICTED: uncharacterized protein LOC102628366 isoform X2 [Citrus sinensis])

HSP 1 Score: 102.1 bits (253), Expect = 6.5e-19
Identity = 63/116 (54.31%), Postives = 72/116 (62.07%), Query Frame = 1 

Query: 4   FLHKLWDETLAGPTPDNGLGKLRKYDPVSASESSS-------VKISGDVPVTRSITILR- 63
           FLHKLWDETLAGPTPD+GLGKLRKYD  S+S SSS       V     V ++RSITILR 
Sbjct: 3   FLHKLWDETLAGPTPDSGLGKLRKYDSFSSSSSSSASRPRPVVADHDHVVISRSITILRT 62

Query: 64  RRNYDFRNL------ADDRDGRMIDSPRTPLTPGTPDLDGDLKRIPWKRLSAESFE 106
             N +FRNL      A D       SPRTPLTPGTP   GD KR   ++  A++ E
Sbjct: 63  NANSNFRNLSGDPGSAPDSPSGSCSSPRTPLTPGTP--TGDFKRFTRRKPLAQALE 116

[Close]
BLAST of Csa7G448700 vs. NCBI nr
Match: gi|568822840|ref|XP_006465834.1| (PREDICTED: uncharacterized protein LOC102628366 isoform X1 [Citrus sinensis])

HSP 1 Score: 102.1 bits (253), Expect = 6.5e-19
Identity = 63/116 (54.31%), Postives = 72/116 (62.07%), Query Frame = 1 

Query: 4   FLHKLWDETLAGPTPDNGLGKLRKYDPVSASESSS-------VKISGDVPVTRSITILR- 63
           FLHKLWDETLAGPTPD+GLGKLRKYD  S+S SSS       V     V ++RSITILR 
Sbjct: 3   FLHKLWDETLAGPTPDSGLGKLRKYDSFSSSSSSSASRPRPVVADHDHVVISRSITILRT 62

Query: 64  RRNYDFRNL------ADDRDGRMIDSPRTPLTPGTPDLDGDLKRIPWKRLSAESFE 106
             N +FRNL      A D       SPRTPLTPGTP   GD KR   ++  A++ E
Sbjct: 63  NANSNFRNLSGDPGSAPDSPSGSCSSPRTPLTPGTP--TGDFKRFTRRKPLAQALE 116

[Close]
BLAST of Csa7G448700 vs. NCBI nr
Match: gi|567868265|ref|XP_006426755.1| (hypothetical protein CICLE_v10026754mg [Citrus clementina])

HSP 1 Score: 101.3 bits (251), Expect = 1.1e-18
Identity = 61/111 (54.95%), Postives = 72/111 (64.86%), Query Frame = 1 

Query: 4   FLHKLWDETLAGPTPDNGLGKLRKYDPVSASESSS------VKISGDVPVTRSITILRR- 63
           FLHKLWDETLAGPTPD+GLGKLRKYD  S+S SS+      V     V ++RSITILR  
Sbjct: 3   FLHKLWDETLAGPTPDSGLGKLRKYDSFSSSSSSASRPRPVVADHDHVVISRSITILRTD 62

Query: 64  RNYDFRNLADD--RDGRMIDSPRTPLTPGTPDLDGDLKRIPWKRLSAESFE 106
            N +FRNL+ D         SPRTPLTPGTP   GD KR   ++  A++ E
Sbjct: 63  ANSNFRNLSGDPGSPSGSCSSPRTPLTPGTP--PGDFKRFTRRKPLAQALE 111

The following BLAST results are available for this feature:
BLAST of Csa7G448700 vs. Swiss-Prot
Match NameE-valueIdentityDescription
DRMH4_ARATH3.0e-1656.98Dormancy-associated protein homolog 4 OS=Arabidopsis thaliana GN=At1g54070 PE=3 ... [more]
DRMH3_ARATH2.8e-0633.33Dormancy-associated protein homolog 3 OS=Arabidopsis thaliana GN=At1g56220 PE=1 ... [more]
BLAST of Csa7G448700 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K9D5_CUCSA6.0e-56100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G448700 PE=4 SV=1[more]
V4SM75_9ROSI7.7e-1954.95Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026754mg PE=4 SV=1[more]
M5XH52_PRUPE1.2e-1650.49Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013609mg PE=4 SV=1[more]
A9PIW6_9ROSI8.0e-1651.85Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2... [more]
A0A067L0B1_JATCU1.0e-1544.26Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24657 PE=4 SV=1[more]
BLAST of Csa7G448700 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G54070.11.7e-1756.98 Dormancy/auxin associated family protein[more]
AT1G56220.36.0e-0736.73 Dormancy/auxin associated family protein[more]
BLAST of Csa7G448700 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778730509|ref|XP_011659802.1|8.7e-56100.00PREDICTED: uncharacterized protein LOC101208956 [Cucumis sativus][more]
gi|659124631|ref|XP_008462264.1|1.7e-4887.04PREDICTED: uncharacterized protein LOC103500664 [Cucumis melo][more]
gi|568822842|ref|XP_006465835.1|6.5e-1954.31PREDICTED: uncharacterized protein LOC102628366 isoform X2 [Citrus sinensis][more]
gi|568822840|ref|XP_006465834.1|6.5e-1954.31PREDICTED: uncharacterized protein LOC102628366 isoform X1 [Citrus sinensis][more]
gi|567868265|ref|XP_006426755.1|1.1e-1854.95hypothetical protein CICLE_v10026754mg [Citrus clementina][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008406DRM/ARP
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU121112cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa7G448700.1Csa7G448700.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU121112CU121112transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008406Dormancy/auxin associated proteinPFAMPF05564Auxin_repressedcoord: 8..84
score: 1.
NoneNo IPR availablePANTHERPTHR33565FAMILY NOT NAMEDcoord: 4..86
score: 2.2
NoneNo IPR availablePANTHERPTHR33565:SF3DORMANCY/AUXIN ASSOCIATED FAMILY PROTEINcoord: 4..86
score: 2.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa7G448700Cla015523Watermelon (97103) v1cuwmB566
Csa7G448700MELO3C024325Melon (DHL92) v3.5.1cumeB521
Csa7G448700ClCG09G001220Watermelon (Charleston Gray)cuwcgB524
Csa7G448700Lsi02G028740Bottle gourd (USVL1VR-Ls)culsiB503
Csa7G448700MELO3C024325.2Melon (DHL92) v3.6.1cumedB501
Csa7G448700Cla97C09G163290Watermelon (97103) v2cuwmbB570
Csa7G448700Bhi09G000222Wax gourdcuwgoB690
Csa7G448700CSPI07G22250Wild cucumber (PI 183967)cpicuB354
Csa7G448700Cucsa.359970Cucumber (Gy14) v1cgycuB508
Csa7G448700CmaCh08G008180Cucurbita maxima (Rimu)cmacuB919
Csa7G448700CmoCh08G007900Cucurbita moschata (Rifu)cmocuB905
Csa7G448700CmoCh17G006450Cucurbita moschata (Rifu)cmocuB373
Csa7G448700Cp4.1LG12g09420Cucurbita pepo (Zucchini)cpecuB156
Csa7G448700Cp4.1LG17g04250Cucurbita pepo (Zucchini)cpecuB336
Csa7G448700CsGy7G020560Cucumber (Gy14) v2cgybcuB323
Csa7G448700Carg18959Silver-seed gourdcarcuB0787
Csa7G448700Carg13913Silver-seed gourdcarcuB0632
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa7G448700Watermelon (97103) v2cuwmbB549
Csa7G448700Wax gourdcuwgoB655
Csa7G448700Cucumber (Chinese Long) v2cucuB133
Csa7G448700Cucumber (Gy14) v1cgycuB217
Csa7G448700Cucurbita maxima (Rimu)cmacuB274
Csa7G448700Cucurbita maxima (Rimu)cmacuB383
Csa7G448700Cucurbita moschata (Rifu)cmocuB262
Csa7G448700Melon (DHL92) v3.5.1cumeB555
Csa7G448700Watermelon (Charleston Gray)cuwcgB563
Csa7G448700Watermelon (97103) v1cuwmB586
Csa7G448700Cucurbita pepo (Zucchini)cpecuB634
Csa7G448700Bottle gourd (USVL1VR-Ls)culsiB531
Csa7G448700Cucumber (Gy14) v2cgybcuB153
Csa7G448700Melon (DHL92) v3.6.1cumedB532