Csa7G404780 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa7G404780
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionT17B22.18 protein
LocationChr7 : 15455777 .. 15456154 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATAGAGCTCCAAGCCTTTGTAAGAGGAATAAGATTCCAGCCAATATCACTAATGTCGCCATGGCCGATGCTCTTGCTGTTCGATTTTCAATCAGTGAGTTATCTTCGTTCCTGTAGTGTCGTTCATCTTTTGATTTTGGATCGTTTGCTCGAGTTTTTGTGGTGATAGATTTGGAGTACCTGAATCGTTTATTGATTATGTAGTTTAATCGTGTGATTTTGGTGATTTTTCTAGGGTTTTGAAAGTTAATTTAGATATTTCCTTATTCCCTCTTGGTATAGGTTGAAGGAATGGAGGAGTTTTTGAGCCTTGATAGATCTGGAGTACCTGCATCGACGATGGAAGCAGAGGTTATTTATCGAAAATTCCACTAA

mRNA sequence

ATGGATAGAGCTCCAAGCCTTTGTAAGAGGAATAAGATTCCAGCCAATATCACTAATGTCGCCATGGCCGATGCTCTTGCTGTTGAAGGAATGGAGGAGTTTTTGAGCCTTGATAGATCTGGAGTACCTGCATCGACGATGGAAGCAGAGGTTATTTATCGAAAATTCCACTAA

Coding sequence (CDS)

ATGGATAGAGCTCCAAGCCTTTGTAAGAGGAATAAGATTCCAGCCAATATCACTAATGTCGCCATGGCCGATGCTCTTGCTGTTGAAGGAATGGAGGAGTTTTTGAGCCTTGATAGATCTGGAGTACCTGCATCGACGATGGAAGCAGAGGTTATTTATCGAAAATTCCACTAA

Protein sequence

MDRAPSLCKRNKIPANITNVAMADALAVEGMEEFLSLDRSGVPASTMEAEVIYRKFH*
Homology
[Close]
BLAST of Csa7G404780 vs. TrEMBL
Match: A0A0A0K5K1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G404780 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 2.7e-23
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 1 

Query: 1  MDRAPSLCKRNKIPANITNVAMADALAVEGMEEFLSLDRSGVPASTMEAEVIYRKFH 58
          MDRAPSLCKRNKIPANITNVAMADALAVEGMEEFLSLDRSGVPASTMEAEVIYRKFH
Sbjct: 1  MDRAPSLCKRNKIPANITNVAMADALAVEGMEEFLSLDRSGVPASTMEAEVIYRKFH 57

[Close]
BLAST of Csa7G404780 vs. TrEMBL
Match: A0A0A0KJF8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G077220 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 3.5e-10
Identity = 39/51 (76.47%), Postives = 43/51 (84.31%), Query Frame = 1 

Query: 6  SLCKRNKIPANITNVAMADALA----VEGMEEFLSLDRSGVPASTMEAEVI 53
          +LCKRNKIPANITNVAMADALA    VEG+EEFL+ DRSGVP S M+A VI
Sbjct: 13 ALCKRNKIPANITNVAMADALAALQSVEGIEEFLNGDRSGVPESPMKAGVI 63

[Close]
BLAST of Csa7G404780 vs. TrEMBL
Match: A0A0A0KKZ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G169010 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.3e-09
Identity = 37/51 (72.55%), Postives = 41/51 (80.39%), Query Frame = 1 

Query: 6  SLCKRNKIPANITNVAMADALA----VEGMEEFLSLDRSGVPASTMEAEVI 53
          +LCKRNKIPANITNVAMADALA    VEG+EEFL  DRSGVP S M+ E +
Sbjct: 13 ALCKRNKIPANITNVAMADALAALQSVEGIEEFLDGDRSGVPESPMKGEEV 63

[Close]
BLAST of Csa7G404780 vs. TAIR10
Match: AT3G03130.1 (AT3G03130.1 unknown protein)

HSP 1 Score: 51.2 bits (121), Expect = 2.5e-07
Identity = 26/42 (61.90%), Postives = 28/42 (66.67%), Query Frame = 1 

Query: 8  CKRNKIPANITNVAMADAL----AVEGMEEFLSLDRSGVPAS 46
          CKRNKIPAN+TN+AMADAL     VEGM+EF+   R   P S
Sbjct: 15 CKRNKIPANMTNIAMADALRDLEIVEGMDEFMDPSRDQSPTS 56

[Close]
BLAST of Csa7G404780 vs. TAIR10
Match: AT5G17160.1 (AT5G17160.1 unknown protein)

HSP 1 Score: 50.4 bits (119), Expect = 4.2e-07
Identity = 24/43 (55.81%), Postives = 30/43 (69.77%), Query Frame = 1 

Query: 7  LCKRNKIPANITNVAMADAL----AVEGMEEFLSLDRSGVPAS 46
          LCKRNKIPAN+TN+AMADAL     V+G++E+++   S  P S
Sbjct: 14 LCKRNKIPANMTNIAMADALKSLEIVDGLDEYMNQSESSAPHS 56

[Close]
BLAST of Csa7G404780 vs. NCBI nr
Match: gi|700189737|gb|KGN44970.1| (hypothetical protein Csa_7G404780 [Cucumis sativus])

HSP 1 Score: 115.2 bits (287), Expect = 3.9e-23
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 1 

Query: 1  MDRAPSLCKRNKIPANITNVAMADALAVEGMEEFLSLDRSGVPASTMEAEVIYRKFH 58
          MDRAPSLCKRNKIPANITNVAMADALAVEGMEEFLSLDRSGVPASTMEAEVIYRKFH
Sbjct: 1  MDRAPSLCKRNKIPANITNVAMADALAVEGMEEFLSLDRSGVPASTMEAEVIYRKFH 57

[Close]
BLAST of Csa7G404780 vs. NCBI nr
Match: gi|700194526|gb|KGN49703.1| (hypothetical protein Csa_5G077220 [Cucumis sativus])

HSP 1 Score: 71.6 bits (174), Expect = 5.0e-10
Identity = 39/51 (76.47%), Postives = 43/51 (84.31%), Query Frame = 1 

Query: 6  SLCKRNKIPANITNVAMADALA----VEGMEEFLSLDRSGVPASTMEAEVI 53
          +LCKRNKIPANITNVAMADALA    VEG+EEFL+ DRSGVP S M+A VI
Sbjct: 13 ALCKRNKIPANITNVAMADALAALQSVEGIEEFLNGDRSGVPESPMKAGVI 63

[Close]
BLAST of Csa7G404780 vs. NCBI nr
Match: gi|778708303|ref|XP_011656161.1| (PREDICTED: uncharacterized protein LOC105435645 [Cucumis sativus])

HSP 1 Score: 69.7 bits (169), Expect = 1.9e-09
Identity = 37/51 (72.55%), Postives = 41/51 (80.39%), Query Frame = 1 

Query: 6  SLCKRNKIPANITNVAMADALA----VEGMEEFLSLDRSGVPASTMEAEVI 53
          +LCKRNKIPANITNVAMADALA    VEG+EEFL  DRSGVP S M+ E +
Sbjct: 13 ALCKRNKIPANITNVAMADALAALQSVEGIEEFLDGDRSGVPESPMKGEEV 63

[Close]
BLAST of Csa7G404780 vs. NCBI nr
Match: gi|659073193|ref|XP_008467303.1| (PREDICTED: dynein heavy chain-like protein PF11_0240 [Cucumis melo])

HSP 1 Score: 69.7 bits (169), Expect = 1.9e-09
Identity = 38/51 (74.51%), Postives = 42/51 (82.35%), Query Frame = 1 

Query: 6  SLCKRNKIPANITNVAMADALA----VEGMEEFLSLDRSGVPASTMEAEVI 53
          +LCKRNKIPANITNVAMADALA    VEG+EEFL+ DRSGV  S M+ EVI
Sbjct: 13 ALCKRNKIPANITNVAMADALAALQSVEGIEEFLNGDRSGVSESPMKVEVI 63

[Close]
BLAST of Csa7G404780 vs. NCBI nr
Match: gi|700195188|gb|KGN50365.1| (hypothetical protein Csa_5G169010 [Cucumis sativus])

HSP 1 Score: 69.7 bits (169), Expect = 1.9e-09
Identity = 37/51 (72.55%), Postives = 41/51 (80.39%), Query Frame = 1 

Query: 6  SLCKRNKIPANITNVAMADALA----VEGMEEFLSLDRSGVPASTMEAEVI 53
          +LCKRNKIPANITNVAMADALA    VEG+EEFL  DRSGVP S M+ E +
Sbjct: 13 ALCKRNKIPANITNVAMADALAALQSVEGIEEFLDGDRSGVPESPMKGEEV 63

The following BLAST results are available for this feature:
BLAST of Csa7G404780 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K5K1_CUCSA2.7e-23100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G404780 PE=4 SV=1[more]
A0A0A0KJF8_CUCSA3.5e-1076.47Uncharacterized protein OS=Cucumis sativus GN=Csa_5G077220 PE=4 SV=1[more]
A0A0A0KKZ3_CUCSA1.3e-0972.55Uncharacterized protein OS=Cucumis sativus GN=Csa_5G169010 PE=4 SV=1[more]
BLAST of Csa7G404780 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G03130.12.5e-0761.90 unknown protein[more]
AT5G17160.14.2e-0755.81 unknown protein[more]
BLAST of Csa7G404780 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700189737|gb|KGN44970.1|3.9e-23100.00hypothetical protein Csa_7G404780 [Cucumis sativus][more]
gi|700194526|gb|KGN49703.1|5.0e-1076.47hypothetical protein Csa_5G077220 [Cucumis sativus][more]
gi|778708303|ref|XP_011656161.1|1.9e-0972.55PREDICTED: uncharacterized protein LOC105435645 [Cucumis sativus][more]
gi|659073193|ref|XP_008467303.1|1.9e-0974.51PREDICTED: dynein heavy chain-like protein PF11_0240 [Cucumis melo][more]
gi|700195188|gb|KGN50365.1|1.9e-0972.55hypothetical protein Csa_5G169010 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa7G404780.1Csa7G404780.1mRNA