Csa7G404780 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa7G404780
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	T17B22.18 protein
Location	Chr7 : 15455777 .. 15456154 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAGAGCTCCAAGCCTTTGTAAGAGGAATAAGATTCCAGCCAATATCACTAATGTCGCCATGGCCGATGCTCTTGCTGTTCGATTTTCAATCAGTGAGTTATCTTCGTTCCTGTAGTGTCGTTCATCTTTTGATTTTGGATCGTTTGCTCGAGTTTTTGTGGTGATAGATTTGGAGTACCTGAATCGTTTATTGATTATGTAGTTTAATCGTGTGATTTTGGTGATTTTTCTAGGGTTTTGAAAGTTAATTTAGATATTTCCTTATTCCCTCTTGGTATAGGTTGAAGGAATGGAGGAGTTTTTGAGCCTTGATAGATCTGGAGTACCTGCATCGACGATGGAAGCAGAGGTTATTTATCGAAAATTCCACTAA

mRNA sequence

ATGGATAGAGCTCCAAGCCTTTGTAAGAGGAATAAGATTCCAGCCAATATCACTAATGTCGCCATGGCCGATGCTCTTGCTGTTGAAGGAATGGAGGAGTTTTTGAGCCTTGATAGATCTGGAGTACCTGCATCGACGATGGAAGCAGAGGTTATTTATCGAAAATTCCACTAA

Coding sequence (CDS)

ATGGATAGAGCTCCAAGCCTTTGTAAGAGGAATAAGATTCCAGCCAATATCACTAATGTCGCCATGGCCGATGCTCTTGCTGTTGAAGGAATGGAGGAGTTTTTGAGCCTTGATAGATCTGGAGTACCTGCATCGACGATGGAAGCAGAGGTTATTTATCGAAAATTCCACTAA

Protein sequence

MDRAPSLCKRNKIPANITNVAMADALAVEGMEEFLSLDRSGVPASTMEAEVIYRKFH*

Homology

[Close]

BLAST of Csa7G404780 vs. TrEMBL
Match: A0A0A0K5K1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G404780 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 2.7e-23
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 1


Query: 1  MDRAPSLCKRNKIPANITNVAMADALAVEGMEEFLSLDRSGVPASTMEAEVIYRKFH 58
          MDRAPSLCKRNKIPANITNVAMADALAVEGMEEFLSLDRSGVPASTMEAEVIYRKFH
Sbjct: 1  MDRAPSLCKRNKIPANITNVAMADALAVEGMEEFLSLDRSGVPASTMEAEVIYRKFH 57

[Close]

BLAST of Csa7G404780 vs. TrEMBL
Match: A0A0A0KJF8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G077220 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 3.5e-10
Identity = 39/51 (76.47%), Postives = 43/51 (84.31%), Query Frame = 1


Query: 6  SLCKRNKIPANITNVAMADALA----VEGMEEFLSLDRSGVPASTMEAEVI 53
          +LCKRNKIPANITNVAMADALA    VEG+EEFL+ DRSGVP S M+A VI
Sbjct: 13 ALCKRNKIPANITNVAMADALAALQSVEGIEEFLNGDRSGVPESPMKAGVI 63

[Close]

BLAST of Csa7G404780 vs. TrEMBL
Match: A0A0A0KKZ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G169010 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.3e-09
Identity = 37/51 (72.55%), Postives = 41/51 (80.39%), Query Frame = 1


Query: 6  SLCKRNKIPANITNVAMADALA----VEGMEEFLSLDRSGVPASTMEAEVI 53
          +LCKRNKIPANITNVAMADALA    VEG+EEFL  DRSGVP S M+ E +
Sbjct: 13 ALCKRNKIPANITNVAMADALAALQSVEGIEEFLDGDRSGVPESPMKGEEV 63

[Close]

BLAST of Csa7G404780 vs. TAIR10
Match: AT3G03130.1 (AT3G03130.1 unknown protein)

HSP 1 Score: 51.2 bits (121), Expect = 2.5e-07
Identity = 26/42 (61.90%), Postives = 28/42 (66.67%), Query Frame = 1


Query: 8  CKRNKIPANITNVAMADAL----AVEGMEEFLSLDRSGVPAS 46
          CKRNKIPAN+TN+AMADAL     VEGM+EF+   R   P S
Sbjct: 15 CKRNKIPANMTNIAMADALRDLEIVEGMDEFMDPSRDQSPTS 56

[Close]

BLAST of Csa7G404780 vs. TAIR10
Match: AT5G17160.1 (AT5G17160.1 unknown protein)

HSP 1 Score: 50.4 bits (119), Expect = 4.2e-07
Identity = 24/43 (55.81%), Postives = 30/43 (69.77%), Query Frame = 1


Query: 7  LCKRNKIPANITNVAMADAL----AVEGMEEFLSLDRSGVPAS 46
          LCKRNKIPAN+TN+AMADAL     V+G++E+++   S  P S
Sbjct: 14 LCKRNKIPANMTNIAMADALKSLEIVDGLDEYMNQSESSAPHS 56

[Close]

BLAST of Csa7G404780 vs. NCBI nr
Match: gi|700189737|gb|KGN44970.1| (hypothetical protein Csa_7G404780 [Cucumis sativus])

HSP 1 Score: 115.2 bits (287), Expect = 3.9e-23
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 1


Query: 1  MDRAPSLCKRNKIPANITNVAMADALAVEGMEEFLSLDRSGVPASTMEAEVIYRKFH 58
          MDRAPSLCKRNKIPANITNVAMADALAVEGMEEFLSLDRSGVPASTMEAEVIYRKFH
Sbjct: 1  MDRAPSLCKRNKIPANITNVAMADALAVEGMEEFLSLDRSGVPASTMEAEVIYRKFH 57

[Close]

BLAST of Csa7G404780 vs. NCBI nr
Match: gi|700194526|gb|KGN49703.1| (hypothetical protein Csa_5G077220 [Cucumis sativus])

HSP 1 Score: 71.6 bits (174), Expect = 5.0e-10
Identity = 39/51 (76.47%), Postives = 43/51 (84.31%), Query Frame = 1


Query: 6  SLCKRNKIPANITNVAMADALA----VEGMEEFLSLDRSGVPASTMEAEVI 53
          +LCKRNKIPANITNVAMADALA    VEG+EEFL+ DRSGVP S M+A VI
Sbjct: 13 ALCKRNKIPANITNVAMADALAALQSVEGIEEFLNGDRSGVPESPMKAGVI 63

[Close]

BLAST of Csa7G404780 vs. NCBI nr
Match: gi|778708303|ref|XP_011656161.1| (PREDICTED: uncharacterized protein LOC105435645 [Cucumis sativus])

HSP 1 Score: 69.7 bits (169), Expect = 1.9e-09
Identity = 37/51 (72.55%), Postives = 41/51 (80.39%), Query Frame = 1


Query: 6  SLCKRNKIPANITNVAMADALA----VEGMEEFLSLDRSGVPASTMEAEVI 53
          +LCKRNKIPANITNVAMADALA    VEG+EEFL  DRSGVP S M+ E +
Sbjct: 13 ALCKRNKIPANITNVAMADALAALQSVEGIEEFLDGDRSGVPESPMKGEEV 63

[Close]

BLAST of Csa7G404780 vs. NCBI nr
Match: gi|659073193|ref|XP_008467303.1| (PREDICTED: dynein heavy chain-like protein PF11_0240 [Cucumis melo])

HSP 1 Score: 69.7 bits (169), Expect = 1.9e-09
Identity = 38/51 (74.51%), Postives = 42/51 (82.35%), Query Frame = 1


Query: 6  SLCKRNKIPANITNVAMADALA----VEGMEEFLSLDRSGVPASTMEAEVI 53
          +LCKRNKIPANITNVAMADALA    VEG+EEFL+ DRSGV  S M+ EVI
Sbjct: 13 ALCKRNKIPANITNVAMADALAALQSVEGIEEFLNGDRSGVSESPMKVEVI 63

[Close]

BLAST of Csa7G404780 vs. NCBI nr
Match: gi|700195188|gb|KGN50365.1| (hypothetical protein Csa_5G169010 [Cucumis sativus])

HSP 1 Score: 69.7 bits (169), Expect = 1.9e-09
Identity = 37/51 (72.55%), Postives = 41/51 (80.39%), Query Frame = 1


Query: 6  SLCKRNKIPANITNVAMADALA----VEGMEEFLSLDRSGVPASTMEAEVI 53
          +LCKRNKIPANITNVAMADALA    VEG+EEFL  DRSGVP S M+ E +
Sbjct: 13 ALCKRNKIPANITNVAMADALAALQSVEGIEEFLDGDRSGVPESPMKGEEV 63

The following BLAST results are available for this feature:

BLAST of Csa7G404780 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K5K1_CUCSA	2.7e-23	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G404780 PE=4 SV=1	[more]
A0A0A0KJF8_CUCSA	3.5e-10	76.47	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G077220 PE=4 SV=1	[more]
A0A0A0KKZ3_CUCSA	1.3e-09	72.55	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G169010 PE=4 SV=1	[more]

BLAST of Csa7G404780 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G03130.1	2.5e-07	61.90	unknown protein	[more]
AT5G17160.1	4.2e-07	55.81	unknown protein	[more]

BLAST of Csa7G404780 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700189737\|gb\|KGN44970.1\|	3.9e-23	100.00	hypothetical protein Csa_7G404780 [Cucumis sativus]	[more]
gi\|700194526\|gb\|KGN49703.1\|	5.0e-10	76.47	hypothetical protein Csa_5G077220 [Cucumis sativus]	[more]
gi\|778708303\|ref\|XP_011656161.1\|	1.9e-09	72.55	PREDICTED: uncharacterized protein LOC105435645 [Cucumis sativus]	[more]
gi\|659073193\|ref\|XP_008467303.1\|	1.9e-09	74.51	PREDICTED: dynein heavy chain-like protein PF11_0240 [Cucumis melo]	[more]
gi\|700195188\|gb\|KGN50365.1\|	1.9e-09	72.55	hypothetical protein Csa_5G169010 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa7G404780.1	Csa7G404780.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa7G404780	Cucurbita maxima (Rimu)	cmacuB388
Csa7G404780	Cucurbita maxima (Rimu)	cmacuB914
Csa7G404780	Cucurbita moschata (Rifu)	cmocuB378
Csa7G404780	Cucurbita moschata (Rifu)	cmocuB900
Csa7G404780	Melon (DHL92) v3.5.1	cumeB532
Csa7G404780	Watermelon (Charleston Gray)	cuwcgB526
Csa7G404780	Watermelon (Charleston Gray)	cuwcgB531
Csa7G404780	Watermelon (97103) v1	cuwmB568
Csa7G404780	Watermelon (97103) v1	cuwmB588
Csa7G404780	Watermelon (97103) v1	cuwmB574
Csa7G404780	Cucurbita pepo (Zucchini)	cpecuB161
Csa7G404780	Cucurbita pepo (Zucchini)	cpecuB343
Csa7G404780	Bottle gourd (USVL1VR-Ls)	culsiB503
Csa7G404780	Bottle gourd (USVL1VR-Ls)	culsiB516
Csa7G404780	Cucumber (Gy14) v2	cgybcuB323
Csa7G404780	Melon (DHL92) v3.6.1	cumedB511
Csa7G404780	Silver-seed gourd	carcuB0119
Csa7G404780	Silver-seed gourd	carcuB0594
Csa7G404780	Silver-seed gourd	carcuB0833
Csa7G404780	Watermelon (97103) v2	cuwmbB517
Csa7G404780	Watermelon (97103) v2	cuwmbB539
Csa7G404780	Watermelon (97103) v2	cuwmbB565
Csa7G404780	Watermelon (97103) v2	cuwmbB572
Csa7G404780	Wax gourd	cuwgoB650
Csa7G404780	Wax gourd	cuwgoB657
Csa7G404780	Wax gourd	cuwgoB691
Csa7G404780	Cucumber (Chinese Long) v2	cucuB149
Csa7G404780	Cucumber (Gy14) v1	cgycuB312