Csa7G398730 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa7G398730
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr7 : 15424330 .. 15424560 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTGCAAAGGTTGTAGCCATTTTCGATGACACCACCGGCACTCAAAATCTTCTCAACGGGATCGTACCAACAGTAAATGAGCAGTTTCTTCGTCCGTTTCTTCGTTCTGCAGAAGCACCCCGGTGTCTTGGCATCAGCACAGTGAATGACATTAAGACAAATGTTAACCTAAATGAGAATGGTGGGTCTGATACACACGTGAAGAATACAAATCATACAAAAATTTAA

mRNA sequence

ATGTGTGCAAAGGTTGTAGCCATTTTCGATGACACCACCGGCACTCAAAATCTTCTCAACGGGATCGTACCAACAGTAAATGAGCAGTTTCTTCGTCCGTTTCTTCGTTCTGCAGAAGCACCCCGGTGTCTTGGCATCAGCACAGTGAATGACATTAAGACAAATGTTAACCTAAATGAGAATGGTGGGTCTGATACACACGTGAAGAATACAAATCATACAAAAATTTAA

Coding sequence (CDS)

ATGTGTGCAAAGGTTGTAGCCATTTTCGATGACACCACCGGCACTCAAAATCTTCTCAACGGGATCGTACCAACAGTAAATGAGCAGTTTCTTCGTCCGTTTCTTCGTTCTGCAGAAGCACCCCGGTGTCTTGGCATCAGCACAGTGAATGACATTAAGACAAATGTTAACCTAAATGAGAATGGTGGGTCTGATACACACGTGAAGAATACAAATCATACAAAAATTTAA

Protein sequence

MCAKVVAIFDDTTGTQNLLNGIVPTVNEQFLRPFLRSAEAPRCLGISTVNDIKTNVNLNENGGSDTHVKNTNHTKI*
Homology
[Close]
BLAST of Csa7G398730 vs. TrEMBL
Match: A0A0A0K9B1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G398730 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 6.4e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1 

Query: 1  MCAKVVAIFDDTTGTQNLLNGIVPTVNEQFLRPFLRSAEAPRCLGISTVNDIKTNVNLNE 60
          MCAKVVAIFDDTTGTQNLLNGIVPTVNEQFLRPFLRSAEAPRCLGISTVNDIKTNVNLNE
Sbjct: 1  MCAKVVAIFDDTTGTQNLLNGIVPTVNEQFLRPFLRSAEAPRCLGISTVNDIKTNVNLNE 60

Query: 61 NGGSDTHVKNTNHTKI 77
          NGGSDTHVKNTNHTKI
Sbjct: 61 NGGSDTHVKNTNHTKI 76

[Close]
BLAST of Csa7G398730 vs. TrEMBL
Match: A0A0A0KAZ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G398720 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.9e-12
Identity = 44/70 (62.86%), Postives = 47/70 (67.14%), Query Frame = 1 

Query: 2  CAKVVAIFDDTTGTQNLLNGIVPTVNEQFLRPFLRSAEAPRCLGIST-------VNDIKT 61
          C     IFDD TGTQNLL GIVP  N+QFLRP    AE+PR LG ST       VNDIK 
Sbjct: 17 CQCCAVIFDDVTGTQNLLKGIVPKANKQFLRP----AESPRHLGFSTLPNIGGRVNDIKA 76

Query: 62 NVNLNENGGS 65
          NV+LNENGGS
Sbjct: 77 NVDLNENGGS 82

[Close]
BLAST of Csa7G398730 vs. TrEMBL
Match: A0A0A0K8F1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G354020 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-11
Identity = 43/64 (67.19%), Postives = 45/64 (70.31%), Query Frame = 1 

Query: 8  IFDDTTGTQNLLNGIVPTVNEQFLRPFLRSAEAPRCLGIS-------TVNDIKTNVNLNE 65
          +FDD TGTQN L GIVPT NEQFLRP    AEAPR LG S       TVNDIK NV LN+
Sbjct: 23 VFDDITGTQNRLKGIVPTTNEQFLRP----AEAPRRLGFSTLPNIGGTVNDIKANVYLNQ 82

[Close]
BLAST of Csa7G398730 vs. TrEMBL
Match: A0A0A0K5I2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G398220 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.4e-11
Identity = 45/70 (64.29%), Postives = 47/70 (67.14%), Query Frame = 1 

Query: 2  CAKVVAIFDDTTGTQNLLNGIVPTVNEQFLRPFLRSAEAPRCLGIS--------TVNDIK 61
          CA+  AIF DT  TQ LLNGIVP VNEQFLRP    AEAP  LG S        TVNDIK
Sbjct: 20 CARAAAIFIDTINTQILLNGIVPKVNEQFLRP----AEAPWHLGFSTLPNIGGGTVNDIK 79

Query: 62 TNVNLNENGG 64
           NV+LNENGG
Sbjct: 80 VNVDLNENGG 85

[Close]
BLAST of Csa7G398730 vs. TrEMBL
Match: A0A0A0K588_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G353000 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.8e-09
Identity = 40/64 (62.50%), Postives = 43/64 (67.19%), Query Frame = 1 

Query: 8  IFDDTTGTQNLLNGIVPTVNEQFLRPFLRSAEAPRCLGIS-------TVNDIKTNVNLNE 65
          +F D TGTQN L GIVPT NEQFLRP     EAPR LG +       TVNDIK NV+LNE
Sbjct: 23 VFYDITGTQNRLKGIVPTTNEQFLRP----TEAPRRLGFNTLSNIGGTVNDIKANVDLNE 82

[Close]
BLAST of Csa7G398730 vs. NCBI nr
Match: gi|700189729|gb|KGN44962.1| (hypothetical protein Csa_7G398730 [Cucumis sativus])

HSP 1 Score: 157.5 bits (397), Expect = 9.2e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1 

Query: 1  MCAKVVAIFDDTTGTQNLLNGIVPTVNEQFLRPFLRSAEAPRCLGISTVNDIKTNVNLNE 60
          MCAKVVAIFDDTTGTQNLLNGIVPTVNEQFLRPFLRSAEAPRCLGISTVNDIKTNVNLNE
Sbjct: 1  MCAKVVAIFDDTTGTQNLLNGIVPTVNEQFLRPFLRSAEAPRCLGISTVNDIKTNVNLNE 60

Query: 61 NGGSDTHVKNTNHTKI 77
          NGGSDTHVKNTNHTKI
Sbjct: 61 NGGSDTHVKNTNHTKI 76

[Close]
BLAST of Csa7G398730 vs. NCBI nr
Match: gi|700189728|gb|KGN44961.1| (hypothetical protein Csa_7G398720 [Cucumis sativus])

HSP 1 Score: 79.0 bits (193), Expect = 4.1e-12
Identity = 44/70 (62.86%), Postives = 47/70 (67.14%), Query Frame = 1 

Query: 2  CAKVVAIFDDTTGTQNLLNGIVPTVNEQFLRPFLRSAEAPRCLGIST-------VNDIKT 61
          C     IFDD TGTQNLL GIVP  N+QFLRP    AE+PR LG ST       VNDIK 
Sbjct: 17 CQCCAVIFDDVTGTQNLLKGIVPKANKQFLRP----AESPRHLGFSTLPNIGGRVNDIKA 76

Query: 62 NVNLNENGGS 65
          NV+LNENGGS
Sbjct: 77 NVDLNENGGS 82

[Close]
BLAST of Csa7G398730 vs. NCBI nr
Match: gi|700189409|gb|KGN44642.1| (hypothetical protein Csa_7G354020 [Cucumis sativus])

HSP 1 Score: 77.0 bits (188), Expect = 1.6e-11
Identity = 43/64 (67.19%), Postives = 45/64 (70.31%), Query Frame = 1 

Query: 8  IFDDTTGTQNLLNGIVPTVNEQFLRPFLRSAEAPRCLGIS-------TVNDIKTNVNLNE 65
          +FDD TGTQN L GIVPT NEQFLRP    AEAPR LG S       TVNDIK NV LN+
Sbjct: 23 VFDDITGTQNRLKGIVPTTNEQFLRP----AEAPRRLGFSTLPNIGGTVNDIKANVYLNQ 82

[Close]
BLAST of Csa7G398730 vs. NCBI nr
Match: gi|700189727|gb|KGN44960.1| (hypothetical protein Csa_7G398220 [Cucumis sativus])

HSP 1 Score: 76.6 bits (187), Expect = 2.1e-11
Identity = 45/70 (64.29%), Postives = 47/70 (67.14%), Query Frame = 1 

Query: 2  CAKVVAIFDDTTGTQNLLNGIVPTVNEQFLRPFLRSAEAPRCLGIS--------TVNDIK 61
          CA+  AIF DT  TQ LLNGIVP VNEQFLRP    AEAP  LG S        TVNDIK
Sbjct: 20 CARAAAIFIDTINTQILLNGIVPKVNEQFLRP----AEAPWHLGFSTLPNIGGGTVNDIK 79

Query: 62 TNVNLNENGG 64
           NV+LNENGG
Sbjct: 80 VNVDLNENGG 85

[Close]
BLAST of Csa7G398730 vs. NCBI nr
Match: gi|778708423|ref|XP_011656188.1| (PREDICTED: exopolygalacturonase-like [Cucumis sativus])

HSP 1 Score: 75.5 bits (184), Expect = 4.6e-11
Identity = 42/64 (65.62%), Postives = 46/64 (71.88%), Query Frame = 1 

Query: 8  IFDDTTGTQNLLNGIVPTVNEQFLRPFLRSAEAPRCLGIS-------TVNDIKTNVNLNE 65
          IF+D TGTQNLL GIVPT N+QFLRP    AEAPR LG +       TVNDI  NV+LNE
Sbjct: 23 IFNDITGTQNLLKGIVPTTNKQFLRP----AEAPRHLGFNTLPDIGGTVNDINANVDLNE 82

The following BLAST results are available for this feature:
BLAST of Csa7G398730 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K9B1_CUCSA6.4e-36100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G398730 PE=4 SV=1[more]
A0A0A0KAZ2_CUCSA2.9e-1262.86Uncharacterized protein OS=Cucumis sativus GN=Csa_7G398720 PE=3 SV=1[more]
A0A0A0K8F1_CUCSA1.1e-1167.19Uncharacterized protein OS=Cucumis sativus GN=Csa_7G354020 PE=4 SV=1[more]
A0A0A0K5I2_CUCSA1.4e-1164.29Uncharacterized protein OS=Cucumis sativus GN=Csa_7G398220 PE=3 SV=1[more]
A0A0A0K588_CUCSA1.8e-0962.50Uncharacterized protein OS=Cucumis sativus GN=Csa_7G353000 PE=3 SV=1[more]
BLAST of Csa7G398730 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700189729|gb|KGN44962.1|9.2e-36100.00hypothetical protein Csa_7G398730 [Cucumis sativus][more]
gi|700189728|gb|KGN44961.1|4.1e-1262.86hypothetical protein Csa_7G398720 [Cucumis sativus][more]
gi|700189409|gb|KGN44642.1|1.6e-1167.19hypothetical protein Csa_7G354020 [Cucumis sativus][more]
gi|700189727|gb|KGN44960.1|2.1e-1164.29hypothetical protein Csa_7G398220 [Cucumis sativus][more]
gi|778708423|ref|XP_011656188.1|4.6e-1165.63PREDICTED: exopolygalacturonase-like [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0005982 starch metabolic process
biological_process GO:0005985 sucrose metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0004650 polygalacturonase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa7G398730.1Csa7G398730.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa7G398730Lsi02G024210Bottle gourd (USVL1VR-Ls)culsiB503
Csa7G398730CSPI07G17670Wild cucumber (PI 183967)cpicuB354
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa7G398730Cucurbita maxima (Rimu)cmacuB388
Csa7G398730Cucurbita maxima (Rimu)cmacuB914
Csa7G398730Cucurbita moschata (Rifu)cmocuB378
Csa7G398730Cucurbita moschata (Rifu)cmocuB900
Csa7G398730Watermelon (Charleston Gray)cuwcgB521
Csa7G398730Melon (DHL92) v3.5.1cumeB532
Csa7G398730Watermelon (Charleston Gray)cuwcgB526
Csa7G398730Watermelon (Charleston Gray)cuwcgB531
Csa7G398730Watermelon (97103) v1cuwmB560
Csa7G398730Watermelon (97103) v1cuwmB568
Csa7G398730Watermelon (97103) v1cuwmB588
Csa7G398730Watermelon (97103) v1cuwmB574
Csa7G398730Cucurbita pepo (Zucchini)cpecuB161
Csa7G398730Cucurbita pepo (Zucchini)cpecuB343
Csa7G398730Bottle gourd (USVL1VR-Ls)culsiB516
Csa7G398730Cucumber (Gy14) v2cgybcuB323
Csa7G398730Melon (DHL92) v3.6.1cumedB511
Csa7G398730Silver-seed gourdcarcuB0119
Csa7G398730Silver-seed gourdcarcuB0594
Csa7G398730Silver-seed gourdcarcuB0833
Csa7G398730Watermelon (97103) v2cuwmbB517
Csa7G398730Watermelon (97103) v2cuwmbB539
Csa7G398730Watermelon (97103) v2cuwmbB565
Csa7G398730Watermelon (97103) v2cuwmbB572
Csa7G398730Wax gourdcuwgoB650
Csa7G398730Wax gourdcuwgoB657
Csa7G398730Wax gourdcuwgoB691
Csa7G398730Cucumber (Chinese Long) v2cucuB149
Csa7G398730Cucumber (Gy14) v1cgycuB312