Csa7G398720 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa7G398720
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionPolygalacturonase; contains IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)
LocationChr7 : 15421703 .. 15422604 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAAGAAATTTTAGCCTCATTCAAATCCTTCTCTTAGTCTTTGCTTGCCAATGTTGTGCTGTCATTTTCGATGACGTCACCGGCACTCAAAATCTGCTCAAGGGGATCGTACCAAAAGCAAATAAGCAGTTTCTTCGTCCTGCAGAATCACCCCGACATCTTGGCTTCAGTACTCTTCCCAACATTGGCGGCAGGGTGAATGACATTAAGGCAAATGTTGATCTAAATGAGAATGGTGGGTCAGTTTTTGATGTTACAAAACATGGAGCTAAAGGTGATGGAGAGACTGATGATGCACATGTGAGAAATATCAACACACACTAACTTCAAACCTTTTAATTTGAGTTAATTATCTTTAAATTGATGACTATAGGAAATTGTATATATTTTTTGCTATTAAATTCTACCGTTATATTATTCCAAACGGATGTCAACTTTTCTTCTATTTTATTTTGGTGGATATGGATGGTACAACTATTTCAACATTTTTTGGCAAAAAGAGTTACAATTATTTTTTATTGTCCATTTGGCAGGCATTCATGACAACATGGATTGCAGCTTGTCGGAACACAGTCGGTCCGACGAAGTTCTTGATCCCACAAGGCACATTTCTGGTGGGTCCGGTGACTTTCGCCGGTCCGTGCAAAAGCTTTCCGATCACCCTCGAAAATCAAGGAACTGTAAAGGCCACGACCGATATTAGTGCATATTCATCTCCAGAATGGTTCTCCATTGAAGATATTACTGGTTTCATCCTCACCGGCTCCGGCGTCTTTGACGGCCAAGGCCTCTCCGTTTGGCCCTACAACGACTGCAAGAAAAACAACTTATGCCAACTTCTTCCAATCGTAACTATATTTTTGCCTTTCATTCTAAATTACAAGTGTTTTACACTCTAA

mRNA sequence

ATGACAAGAAATTTTAGCCTCATTCAAATCCTTCTCTTAGTCTTTGCTTGCCAATGTTGTGCTGTCATTTTCGATGACGTCACCGGCACTCAAAATCTGCTCAAGGGGATCGTACCAAAAGCAAATAAGCAGTTTCTTCGTCCTGCAGAATCACCCCGACATCTTGGCTTCAGTACTCTTCCCAACATTGGCGGCAGGGTGAATGACATTAAGGCAAATGTTGATCTAAATGAGAATGGTGGGTCAGTTTTTGATGTTACAAAACATGGAGCTAAAGGTGATGGAGAGACTGATGATGCACATGCATTCATGACAACATGGATTGCAGCTTGTCGGAACACAGTCGGTCCGACGAAGTTCTTGATCCCACAAGGCACATTTCTGGTGGGTCCGGTGACTTTCGCCGGTCCGTGCAAAAGCTTTCCGATCACCCTCGAAAATCAAGGAACTGTAAAGGCCACGACCGATATTAGTGCATATTCATCTCCAGAATGGTTCTCCATTGAAGATATTACTGGTTTCATCCTCACCGGCTCCGGCGTCTTTGACGGCCAAGGCCTCTCCGTTTGGCCCTACAACGACTGCAAGAAAAACAACTTATGCCAACTTCTTCCAATCGTAACTATATTTTTGCCTTTCATTCTAAATTACAAGTGTTTTACACTCTAA

Coding sequence (CDS)

ATGACAAGAAATTTTAGCCTCATTCAAATCCTTCTCTTAGTCTTTGCTTGCCAATGTTGTGCTGTCATTTTCGATGACGTCACCGGCACTCAAAATCTGCTCAAGGGGATCGTACCAAAAGCAAATAAGCAGTTTCTTCGTCCTGCAGAATCACCCCGACATCTTGGCTTCAGTACTCTTCCCAACATTGGCGGCAGGGTGAATGACATTAAGGCAAATGTTGATCTAAATGAGAATGGTGGGTCAGTTTTTGATGTTACAAAACATGGAGCTAAAGGTGATGGAGAGACTGATGATGCACATGCATTCATGACAACATGGATTGCAGCTTGTCGGAACACAGTCGGTCCGACGAAGTTCTTGATCCCACAAGGCACATTTCTGGTGGGTCCGGTGACTTTCGCCGGTCCGTGCAAAAGCTTTCCGATCACCCTCGAAAATCAAGGAACTGTAAAGGCCACGACCGATATTAGTGCATATTCATCTCCAGAATGGTTCTCCATTGAAGATATTACTGGTTTCATCCTCACCGGCTCCGGCGTCTTTGACGGCCAAGGCCTCTCCGTTTGGCCCTACAACGACTGCAAGAAAAACAACTTATGCCAACTTCTTCCAATCGTAACTATATTTTTGCCTTTCATTCTAAATTACAAGTGTTTTACACTCTAA

Protein sequence

MTRNFSLIQILLLVFACQCCAVIFDDVTGTQNLLKGIVPKANKQFLRPAESPRHLGFSTLPNIGGRVNDIKANVDLNENGGSVFDVTKHGAKGDGETDDAHAFMTTWIAACRNTVGPTKFLIPQGTFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSPEWFSIEDITGFILTGSGVFDGQGLSVWPYNDCKKNNLCQLLPIVTIFLPFILNYKCFTL*
Homology
[Close]
BLAST of Csa7G398720 vs. Swiss-Prot
Match: PGLR1_ARATH (Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana GN=PGA3 PE=2 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.6e-27
Identity = 62/129 (48.06%), Postives = 79/129 (61.24%), Query Frame = 1 

Query: 77  NENGGSVFDVTKHGAKGDGETDDAHAFMTTWIAACRNTVGPTKFLIPQGTFLVGPVTFAG 136
           N    +V+D+TK GA GDG T+   AF+ TWI  C + V P   L+P+GTFL GPV FAG
Sbjct: 45  NSGNPTVYDITKFGAVGDGSTNTFKAFLNTWIQVCDSPV-PATLLVPKGTFLAGPVIFAG 104

Query: 137 PCKSFPITLENQGTVKATTDISAYSSPEWFSIEDITGFILTGSGVFDGQGLSVWPYNDCK 196
           PCKS  +T+   GT+ ATT  S Y++PEWF  E +   +LTG+G F G+G +VW  + C 
Sbjct: 105 PCKS-KVTVNVIGTIIATT--SGYATPEWFLFERVDNLVLTGTGTFHGKGEAVWKADGCG 164

Query: 197 KNNLCQLLP 206
           K   C L P
Sbjct: 165 KKVQCNLPP 169

[Close]
BLAST of Csa7G398720 vs. Swiss-Prot
Match: PGLR3_MAIZE (Exopolygalacturonase OS=Zea mays GN=PG2C PE=2 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.1e-24
Identity = 60/139 (43.17%), Postives = 76/139 (54.68%), Query Frame = 1 

Query: 68  NDIKANVDLNENGGSVFDVTKHGAKGDGETDDAHAFMTTWIAACRNTVGPTKFLIPQGTF 127
           ND KA+       G  FD+TK GA G+G+TD   A    W +AC  T G    LIP+G F
Sbjct: 30  NDAKAS-----GPGGSFDITKLGASGNGKTDSTKAVQEAWASACGGT-GKQTILIPKGDF 89

Query: 128 LVGPVTFAGPCKSFPITLENQGTVKATTDISAYSS-PEWFSIEDITGFILTGSGVFDGQG 187
           LVGP+ F GPCK   +T++  G + ATTD+S Y     W  I  +   ++TG G  DGQG
Sbjct: 90  LVGPLNFTGPCKG-DVTIQVNGNLLATTDLSQYKDHGNWIEILRVDNLVITGKGKLDGQG 149

Query: 188 LSVWPYNDCKKNNLCQLLP 206
            +VW  N C K   C++LP
Sbjct: 150 PAVWSKNSCVKKYDCKILP 161

[Close]
BLAST of Csa7G398720 vs. Swiss-Prot
Match: PGLR2_MAIZE (Exopolygalacturonase OS=Zea mays GN=PG9 PE=2 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.3e-23
Identity = 57/134 (42.54%), Postives = 74/134 (55.22%), Query Frame = 1 

Query: 74  VDLNENG-GSVFDVTKHGAKGDGETDDAHAFMTTWIAACRNTVGPTKFLIPQGTFLVGPV 133
           +D   +G G  FD+TK GA G+G+TD   A    W +AC  T G    LIP+G FLVG +
Sbjct: 30  IDAKASGPGGSFDITKLGASGNGKTDSTKAVQEAWASACGGT-GKQTILIPKGDFLVGQL 89

Query: 134 TFAGPCKSFPITLENQGTVKATTDISAYSS-PEWFSIEDITGFILTGSGVFDGQGLSVWP 193
            F GPCK   +T++  G + ATTD+S Y     W  I  +   ++TG G  DGQG +VW 
Sbjct: 90  NFTGPCKG-DVTIQVDGNLLATTDLSQYKEHGNWIEILRVDNLVITGKGNLDGQGPAVWS 149

Query: 194 YNDCKKNNLCQLLP 206
            N C K   C++LP
Sbjct: 150 KNSCTKKYDCKILP 161

[Close]
BLAST of Csa7G398720 vs. Swiss-Prot
Match: PGLR1_MAIZE (Exopolygalacturonase OS=Zea mays GN=PG1 PE=1 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.3e-23
Identity = 57/134 (42.54%), Postives = 74/134 (55.22%), Query Frame = 1 

Query: 74  VDLNENG-GSVFDVTKHGAKGDGETDDAHAFMTTWIAACRNTVGPTKFLIPQGTFLVGPV 133
           +D   +G G  FD+TK GA G+G+TD   A    W +AC  T G    LIP+G FLVG +
Sbjct: 30  IDAKASGPGGSFDITKLGASGNGKTDSTKAVQEAWASACGGT-GKQTILIPKGDFLVGQL 89

Query: 134 TFAGPCKSFPITLENQGTVKATTDISAYSS-PEWFSIEDITGFILTGSGVFDGQGLSVWP 193
            F GPCK   +T++  G + ATTD+S Y     W  I  +   ++TG G  DGQG +VW 
Sbjct: 90  NFTGPCKG-DVTIQVDGNLLATTDLSQYKDHGNWIEILRVDNLVITGKGNLDGQGPAVWS 149

Query: 194 YNDCKKNNLCQLLP 206
            N C K   C++LP
Sbjct: 150 KNSCTKKYDCKILP 161

[Close]
BLAST of Csa7G398720 vs. Swiss-Prot
Match: PGLR2_PLAAC (Exopolygalacturonase (Fragment) OS=Platanus acerifolia GN=plaa2 PE=1 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 6.4e-21
Identity = 53/125 (42.40%), Postives = 69/125 (55.20%), Query Frame = 1 

Query: 78  ENGGSVFDVTKHGAKGDGETDDAHAFMTTWIAACRNTVGPTKFLIPQGTFLVGPVTFAGP 137
           ++ GSVF+V  +GAKG G  D + A M  W AAC +  GP+  LIP+G + +G V   GP
Sbjct: 4   QSSGSVFNVNDYGAKGAG--DISQAVMKAWKAACASQ-GPSTVLIPKGNYNMGEVAMQGP 63

Query: 138 CKSFPITLENQGTVKATTDISAYSSPEWFSIEDITGFILTGSGVFDGQGLSVWPYNDCKK 197
           CK   I  +  G VKA  D S + S  W S   I G  ++G+G  DGQG + W  N+C K
Sbjct: 64  CKGSKIGFQIDGVVKAPADPSKFKSDGWVSFYRIDGLTVSGTGTLDGQGQTAWAKNNCDK 123

Query: 198 NNLCQ 203
           N  C+
Sbjct: 124 NPNCK 125

[Close]
BLAST of Csa7G398720 vs. TrEMBL
Match: A0A0A0KAZ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G398720 PE=3 SV=1)

HSP 1 Score: 462.2 bits (1188), Expect = 3.5e-127
Identity = 222/222 (100.00%), Postives = 222/222 (100.00%), Query Frame = 1 

Query: 1   MTRNFSLIQILLLVFACQCCAVIFDDVTGTQNLLKGIVPKANKQFLRPAESPRHLGFSTL 60
           MTRNFSLIQILLLVFACQCCAVIFDDVTGTQNLLKGIVPKANKQFLRPAESPRHLGFSTL
Sbjct: 1   MTRNFSLIQILLLVFACQCCAVIFDDVTGTQNLLKGIVPKANKQFLRPAESPRHLGFSTL 60

Query: 61  PNIGGRVNDIKANVDLNENGGSVFDVTKHGAKGDGETDDAHAFMTTWIAACRNTVGPTKF 120
           PNIGGRVNDIKANVDLNENGGSVFDVTKHGAKGDGETDDAHAFMTTWIAACRNTVGPTKF
Sbjct: 61  PNIGGRVNDIKANVDLNENGGSVFDVTKHGAKGDGETDDAHAFMTTWIAACRNTVGPTKF 120

Query: 121 LIPQGTFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSPEWFSIEDITGFILTGSG 180
           LIPQGTFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSPEWFSIEDITGFILTGSG
Sbjct: 121 LIPQGTFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSPEWFSIEDITGFILTGSG 180

Query: 181 VFDGQGLSVWPYNDCKKNNLCQLLPIVTIFLPFILNYKCFTL 223
           VFDGQGLSVWPYNDCKKNNLCQLLPIVTIFLPFILNYKCFTL
Sbjct: 181 VFDGQGLSVWPYNDCKKNNLCQLLPIVTIFLPFILNYKCFTL 222

[Close]
BLAST of Csa7G398720 vs. TrEMBL
Match: A0A0A0K588_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G353000 PE=3 SV=1)

HSP 1 Score: 385.2 bits (988), Expect = 5.5e-104
Identity = 184/210 (87.62%), Postives = 195/210 (92.86%), Query Frame = 1 

Query: 1   MTRNFSLIQILLLVFACQCCAVIFDDVTGTQNLLKGIVPKANKQFLRPAESPRHLGFSTL 60
           MTRN SLIQILLLVFA QCCAV+F D+TGTQN LKGIVP  N+QFLRP E+PR LGF+TL
Sbjct: 1   MTRNLSLIQILLLVFAWQCCAVVFYDITGTQNRLKGIVPTTNEQFLRPTEAPRRLGFNTL 60

Query: 61  PNIGGRVNDIKANVDLNENGGSVFDVTKHGAKGDGETDDAHAFMTTWIAACRNTVGPTKF 120
            NIGG VNDIKANVDLNENG S+FDVTKHGAK +G+TDDA AFMTTWIAACRNTVGP KF
Sbjct: 61  SNIGGTVNDIKANVDLNENGVSIFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKF 120

Query: 121 LIPQGTFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSPEWFSIEDITGFILTGSG 180
           LIPQGTFLVGPVTFAGPCKSFPITLEN+GTVKATTDISAYSSPEWFS+EDITGFILTGSG
Sbjct: 121 LIPQGTFLVGPVTFAGPCKSFPITLENEGTVKATTDISAYSSPEWFSVEDITGFILTGSG 180

Query: 181 VFDGQGLSVWPYNDCKKNNLCQLLPIVTIF 211
           VFDGQGLSVW YNDCKKNNLCQLLPIVTI+
Sbjct: 181 VFDGQGLSVWSYNDCKKNNLCQLLPIVTIY 210

[Close]
BLAST of Csa7G398720 vs. TrEMBL
Match: A0A0A0KMA6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G222970 PE=3 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 1.3e-89
Identity = 159/173 (91.91%), Postives = 165/173 (95.38%), Query Frame = 1 

Query: 34  LKGIVPKANKQFLRPAESPRHLGFSTLPNIGGRVNDIKANVDLNENGGSVFDVTKHGAKG 93
           L GIVP  NKQFLRPAE+PRHLGF+TLP+IGG VNDI ANVDLNENGGSVFDVTKHGAK 
Sbjct: 6   LYGIVPTTNKQFLRPAEAPRHLGFNTLPDIGGTVNDINANVDLNENGGSVFDVTKHGAKA 65

Query: 94  DGETDDAHAFMTTWIAACRNTVGPTKFLIPQGTFLVGPVTFAGPCKSFPITLENQGTVKA 153
           DG+TDDA AFMTTWIAACRNTVGP KFLIPQGTFLVGPVTFAGPCKS+PITLENQGTVKA
Sbjct: 66  DGKTDDAQAFMTTWIAACRNTVGPAKFLIPQGTFLVGPVTFAGPCKSYPITLENQGTVKA 125

Query: 154 TTDISAYSSPEWFSIEDITGFILTGSGVFDGQGLSVWPYNDCKKNNLCQLLPI 207
           TTDISAYSSPEWFS+EDITGFILTGSGVFDGQGLSVWPYNDCKKNNLCQLLPI
Sbjct: 126 TTDISAYSSPEWFSLEDITGFILTGSGVFDGQGLSVWPYNDCKKNNLCQLLPI 178

[Close]
BLAST of Csa7G398720 vs. TrEMBL
Match: A0A0A0K5I2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G398220 PE=3 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 8.8e-86
Identity = 164/192 (85.42%), Postives = 169/192 (88.02%), Query Frame = 1 

Query: 1   MTRNFSLIQILLLVFACQCCA---VIFDDVTGTQNLLKGIVPKANKQFLRPAESPRHLGF 60
           MTRNFSLIQILLLVFA +CCA    IF D   TQ LL GIVPK N+QFLRPAE+P HLGF
Sbjct: 1   MTRNFSLIQILLLVFAWECCARAAAIFIDTINTQILLNGIVPKVNEQFLRPAEAPWHLGF 60

Query: 61  STLPNIGG-RVNDIKANVDLNENGGSVFDVTKHGAKGDGETDDAHAFMTTWIAACRNTVG 120
           STLPNIGG  VNDIK NVDLNENGG VFDVTKHGAK DGETDDA AFMTTWIAACRNTVG
Sbjct: 61  STLPNIGGGTVNDIKVNVDLNENGGLVFDVTKHGAKADGETDDAQAFMTTWIAACRNTVG 120

Query: 121 PTKFLIPQGTFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSPEWFSIEDITGFIL 180
           P KFLIPQ  FLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSS EWFSIED+TGFIL
Sbjct: 121 PAKFLIPQDIFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSSEWFSIEDVTGFIL 180

Query: 181 TGSGVFDGQGLS 189
           TGSGVFDGQG+S
Sbjct: 181 TGSGVFDGQGVS 192

[Close]
BLAST of Csa7G398720 vs. TrEMBL
Match: A0A0A0K5G0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G375750 PE=3 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 3.2e-72
Identity = 144/212 (67.92%), Postives = 161/212 (75.94%), Query Frame = 1 

Query: 1   MTRNFSLIQILLLVFACQC----CAVIFDDVTGTQNLLKGIVPKANKQFL-RPAESPRHL 60
           ++R  SL QILLLVFA QC     A+I DD+    NL   I+   N+Q +  P  +P  L
Sbjct: 3   ISRILSLFQILLLVFAWQCYDKVAAIITDDIA---NLNNEIISTINQQLIPSPTATPGPL 62

Query: 61  GFSTLPNIGGRVNDIK-ANVDLNENGGSVFDVTKHGAKGDGETDDAHAFMTTWIAACRNT 120
           G  TLP++   VND    N DLNENG SVFDVTKHGAK DG+TDDA AF TTWIAACRNT
Sbjct: 63  GMETLPDLDDTVNDSNNTNNDLNENGESVFDVTKHGAKADGKTDDAQAFETTWIAACRNT 122

Query: 121 VGPTKFLIPQGTFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSPEWFSIEDITGF 180
           VGP K LIP+GT+LVGP+T AGPCKSFPIT+ENQG VKATTD+S YSSPEWFSIEDITGF
Sbjct: 123 VGPVKILIPKGTYLVGPMTLAGPCKSFPITIENQGIVKATTDLSEYSSPEWFSIEDITGF 182

Query: 181 ILTGSGVFDGQGLSVWPYNDCKKNNLCQLLPI 207
           ILTGSGVFDGQG +VW YNDCK N  CQLLPI
Sbjct: 183 ILTGSGVFDGQGTAVWAYNDCKSNKDCQLLPI 211

[Close]
BLAST of Csa7G398720 vs. TAIR10
Match: AT1G02790.1 (AT1G02790.1 polygalacturonase 4)

HSP 1 Score: 124.4 bits (311), Expect = 8.8e-29
Identity = 62/129 (48.06%), Postives = 79/129 (61.24%), Query Frame = 1 

Query: 77  NENGGSVFDVTKHGAKGDGETDDAHAFMTTWIAACRNTVGPTKFLIPQGTFLVGPVTFAG 136
           N    +V+D+TK GA GDG T+   AF+ TWI  C + V P   L+P+GTFL GPV FAG
Sbjct: 45  NSGNPTVYDITKFGAVGDGSTNTFKAFLNTWIQVCDSPV-PATLLVPKGTFLAGPVIFAG 104

Query: 137 PCKSFPITLENQGTVKATTDISAYSSPEWFSIEDITGFILTGSGVFDGQGLSVWPYNDCK 196
           PCKS  +T+   GT+ ATT  S Y++PEWF  E +   +LTG+G F G+G +VW  + C 
Sbjct: 105 PCKS-KVTVNVIGTIIATT--SGYATPEWFLFERVDNLVLTGTGTFHGKGEAVWKADGCG 164

Query: 197 KNNLCQLLP 206
           K   C L P
Sbjct: 165 KKVQCNLPP 169

[Close]
BLAST of Csa7G398720 vs. TAIR10
Match: AT2G15450.1 (AT2G15450.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 111.7 bits (278), Expect = 5.9e-25
Identity = 56/134 (41.79%), Postives = 75/134 (55.97%), Query Frame = 1 

Query: 83  VFDVTKHGAKGDGETDDAHAFMTTWIAACRNTVGPTKFLIPQGTFLVGPVTFAGPCKSFP 142
           VF+V +HGAK DG+TD+A+AF + W  AC+   G +K  +P+GTF +G V F GPCK+ P
Sbjct: 30  VFNVQRHGAKPDGKTDNANAFTSIWSRACKRISGSSKIYVPKGTFYLGGVEFVGPCKN-P 89

Query: 143 ITLENQGTVKATTDISAYSSPEWFSIEDITGFILTGSGVFDGQGLSVWPYNDCKKNNLCQ 202
           I     GT+ A  + S      W +   I    ++GSG  DGQG   WP+NDC  N  C 
Sbjct: 90  IEFIIDGTLLAPANPSDIKQDTWINFRYINNLSISGSGTLDGQGKQSWPHNDCHTNPNCP 149

Query: 203 LLPIVTIFLPFILN 217
            L  +T+   F+ N
Sbjct: 150 KL-AMTMGFAFVNN 161

[Close]
BLAST of Csa7G398720 vs. TAIR10
Match: AT2G15460.1 (AT2G15460.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 111.7 bits (278), Expect = 5.9e-25
Identity = 56/134 (41.79%), Postives = 75/134 (55.97%), Query Frame = 1 

Query: 83  VFDVTKHGAKGDGETDDAHAFMTTWIAACRNTVGPTKFLIPQGTFLVGPVTFAGPCKSFP 142
           VF+V +HGAK DG+TD+A+AF + W  AC+   G +K  +P+GTF +G V F GPCK+ P
Sbjct: 30  VFNVQRHGAKPDGKTDNANAFTSIWSRACKRISGSSKIYVPKGTFYLGGVEFVGPCKN-P 89

Query: 143 ITLENQGTVKATTDISAYSSPEWFSIEDITGFILTGSGVFDGQGLSVWPYNDCKKNNLCQ 202
           I     GT+ A  + S      W +   I    ++GSG  DGQG   WP+NDC  N  C 
Sbjct: 90  IEFIIDGTLLAPANPSDIKQDTWINFRYINNLSISGSGTLDGQGKQSWPHNDCHTNPNCP 149

Query: 203 LLPIVTIFLPFILN 217
            L  +T+   F+ N
Sbjct: 150 KL-AMTMGFAFVNN 161

[Close]
BLAST of Csa7G398720 vs. TAIR10
Match: AT2G26620.1 (AT2G26620.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 109.4 bits (272), Expect = 2.9e-24
Identity = 52/124 (41.94%), Postives = 69/124 (55.65%), Query Frame = 1 

Query: 83  VFDVTKHGAKGDGETDDAHAFMTTWIAACRNTVGPTKFLIPQGTFLVGPVTFAGPCKSFP 142
           VF+V +HG+K DG+TD+ +AF + W  AC+   G +K  +P+GTF +G V F GPCK+ P
Sbjct: 30  VFNVQRHGSKPDGKTDNTNAFTSIWSRACKRISGSSKIYVPKGTFYLGGVEFVGPCKN-P 89

Query: 143 ITLENQGTVKATTDISAYSSPEWFSIEDITGFILTGSGVFDGQGLSVWPYNDCKKNNLCQ 202
           I     GT+ A  + +      W +   I    ++GSG  DGQG   WP NDC KN  C 
Sbjct: 90  IEFIIDGTLLAPANPNDIKQDTWINFRYINNLSISGSGTLDGQGKQSWPLNDCHKNPNCP 149

Query: 203 LLPI 207
            L I
Sbjct: 150 KLAI 152

[Close]
BLAST of Csa7G398720 vs. TAIR10
Match: AT2G15470.1 (AT2G15470.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 107.8 bits (268), Expect = 8.5e-24
Identity = 55/134 (41.04%), Postives = 74/134 (55.22%), Query Frame = 1 

Query: 83  VFDVTKHGAKGDGETDDAHAFMTTWIAACRNTVGPTKFLIPQGTFLVGPVTFAGPCKSFP 142
           VF+V +HGAK DG+TD+A+AF + W  AC+   G +K  +P+GTF +G V F G CK+ P
Sbjct: 30  VFNVQRHGAKPDGKTDNANAFTSIWSRACKRISGSSKIYVPKGTFYLGGVEFVGLCKN-P 89

Query: 143 ITLENQGTVKATTDISAYSSPEWFSIEDITGFILTGSGVFDGQGLSVWPYNDCKKNNLCQ 202
           I     GT+ A  + S      W +   I    ++GSG  DGQG   WP+NDC  N  C 
Sbjct: 90  IEFIIDGTLLAPANPSDIKQDTWINFRYINNLSISGSGTLDGQGKQSWPHNDCHTNPNCP 149

Query: 203 LLPIVTIFLPFILN 217
            L  +T+   F+ N
Sbjct: 150 KL-AMTMGFAFVNN 161

[Close]
BLAST of Csa7G398720 vs. NCBI nr
Match: gi|700189728|gb|KGN44961.1| (hypothetical protein Csa_7G398720 [Cucumis sativus])

HSP 1 Score: 462.2 bits (1188), Expect = 5.0e-127
Identity = 222/222 (100.00%), Postives = 222/222 (100.00%), Query Frame = 1 

Query: 1   MTRNFSLIQILLLVFACQCCAVIFDDVTGTQNLLKGIVPKANKQFLRPAESPRHLGFSTL 60
           MTRNFSLIQILLLVFACQCCAVIFDDVTGTQNLLKGIVPKANKQFLRPAESPRHLGFSTL
Sbjct: 1   MTRNFSLIQILLLVFACQCCAVIFDDVTGTQNLLKGIVPKANKQFLRPAESPRHLGFSTL 60

Query: 61  PNIGGRVNDIKANVDLNENGGSVFDVTKHGAKGDGETDDAHAFMTTWIAACRNTVGPTKF 120
           PNIGGRVNDIKANVDLNENGGSVFDVTKHGAKGDGETDDAHAFMTTWIAACRNTVGPTKF
Sbjct: 61  PNIGGRVNDIKANVDLNENGGSVFDVTKHGAKGDGETDDAHAFMTTWIAACRNTVGPTKF 120

Query: 121 LIPQGTFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSPEWFSIEDITGFILTGSG 180
           LIPQGTFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSPEWFSIEDITGFILTGSG
Sbjct: 121 LIPQGTFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSPEWFSIEDITGFILTGSG 180

Query: 181 VFDGQGLSVWPYNDCKKNNLCQLLPIVTIFLPFILNYKCFTL 223
           VFDGQGLSVWPYNDCKKNNLCQLLPIVTIFLPFILNYKCFTL
Sbjct: 181 VFDGQGLSVWPYNDCKKNNLCQLLPIVTIFLPFILNYKCFTL 222

[Close]
BLAST of Csa7G398720 vs. NCBI nr
Match: gi|778708423|ref|XP_011656188.1| (PREDICTED: exopolygalacturonase-like [Cucumis sativus])

HSP 1 Score: 390.2 bits (1001), Expect = 2.4e-105
Identity = 186/206 (90.29%), Postives = 195/206 (94.66%), Query Frame = 1 

Query: 1   MTRNFSLIQILLLVFACQCCAVIFDDVTGTQNLLKGIVPKANKQFLRPAESPRHLGFSTL 60
           MTRN SLIQI+LL FA Q CAVIF+D+TGTQNLLKGIVP  NKQFLRPAE+PRHLGF+TL
Sbjct: 1   MTRNLSLIQIILLEFAWQSCAVIFNDITGTQNLLKGIVPTTNKQFLRPAEAPRHLGFNTL 60

Query: 61  PNIGGRVNDIKANVDLNENGGSVFDVTKHGAKGDGETDDAHAFMTTWIAACRNTVGPTKF 120
           P+IGG VNDI ANVDLNENGGSVFDVTKHGAK DG+TDDA AFMTTWIAACRNTVGP KF
Sbjct: 61  PDIGGTVNDINANVDLNENGGSVFDVTKHGAKADGKTDDAQAFMTTWIAACRNTVGPAKF 120

Query: 121 LIPQGTFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSPEWFSIEDITGFILTGSG 180
           LIPQGTFLVGPVTFAGPCKS+PITLENQGTVKATTDISAYSSPEWFS+EDITGFILTGSG
Sbjct: 121 LIPQGTFLVGPVTFAGPCKSYPITLENQGTVKATTDISAYSSPEWFSLEDITGFILTGSG 180

Query: 181 VFDGQGLSVWPYNDCKKNNLCQLLPI 207
           VFDGQGLSVWPYNDCKKNNLCQLLPI
Sbjct: 181 VFDGQGLSVWPYNDCKKNNLCQLLPI 206

[Close]
BLAST of Csa7G398720 vs. NCBI nr
Match: gi|700189405|gb|KGN44638.1| (hypothetical protein Csa_7G353000 [Cucumis sativus])

HSP 1 Score: 385.2 bits (988), Expect = 7.8e-104
Identity = 184/210 (87.62%), Postives = 195/210 (92.86%), Query Frame = 1 

Query: 1   MTRNFSLIQILLLVFACQCCAVIFDDVTGTQNLLKGIVPKANKQFLRPAESPRHLGFSTL 60
           MTRN SLIQILLLVFA QCCAV+F D+TGTQN LKGIVP  N+QFLRP E+PR LGF+TL
Sbjct: 1   MTRNLSLIQILLLVFAWQCCAVVFYDITGTQNRLKGIVPTTNEQFLRPTEAPRRLGFNTL 60

Query: 61  PNIGGRVNDIKANVDLNENGGSVFDVTKHGAKGDGETDDAHAFMTTWIAACRNTVGPTKF 120
            NIGG VNDIKANVDLNENG S+FDVTKHGAK +G+TDDA AFMTTWIAACRNTVGP KF
Sbjct: 61  SNIGGTVNDIKANVDLNENGVSIFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKF 120

Query: 121 LIPQGTFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSPEWFSIEDITGFILTGSG 180
           LIPQGTFLVGPVTFAGPCKSFPITLEN+GTVKATTDISAYSSPEWFS+EDITGFILTGSG
Sbjct: 121 LIPQGTFLVGPVTFAGPCKSFPITLENEGTVKATTDISAYSSPEWFSVEDITGFILTGSG 180

Query: 181 VFDGQGLSVWPYNDCKKNNLCQLLPIVTIF 211
           VFDGQGLSVW YNDCKKNNLCQLLPIVTI+
Sbjct: 181 VFDGQGLSVWSYNDCKKNNLCQLLPIVTIY 210

[Close]
BLAST of Csa7G398720 vs. NCBI nr
Match: gi|700195561|gb|KGN50738.1| (hypothetical protein Csa_5G222970 [Cucumis sativus])

HSP 1 Score: 337.4 bits (864), Expect = 1.9e-89
Identity = 159/173 (91.91%), Postives = 165/173 (95.38%), Query Frame = 1 

Query: 34  LKGIVPKANKQFLRPAESPRHLGFSTLPNIGGRVNDIKANVDLNENGGSVFDVTKHGAKG 93
           L GIVP  NKQFLRPAE+PRHLGF+TLP+IGG VNDI ANVDLNENGGSVFDVTKHGAK 
Sbjct: 6   LYGIVPTTNKQFLRPAEAPRHLGFNTLPDIGGTVNDINANVDLNENGGSVFDVTKHGAKA 65

Query: 94  DGETDDAHAFMTTWIAACRNTVGPTKFLIPQGTFLVGPVTFAGPCKSFPITLENQGTVKA 153
           DG+TDDA AFMTTWIAACRNTVGP KFLIPQGTFLVGPVTFAGPCKS+PITLENQGTVKA
Sbjct: 66  DGKTDDAQAFMTTWIAACRNTVGPAKFLIPQGTFLVGPVTFAGPCKSYPITLENQGTVKA 125

Query: 154 TTDISAYSSPEWFSIEDITGFILTGSGVFDGQGLSVWPYNDCKKNNLCQLLPI 207
           TTDISAYSSPEWFS+EDITGFILTGSGVFDGQGLSVWPYNDCKKNNLCQLLPI
Sbjct: 126 TTDISAYSSPEWFSLEDITGFILTGSGVFDGQGLSVWPYNDCKKNNLCQLLPI 178

[Close]
BLAST of Csa7G398720 vs. NCBI nr
Match: gi|700189727|gb|KGN44960.1| (hypothetical protein Csa_7G398220 [Cucumis sativus])

HSP 1 Score: 324.7 bits (831), Expect = 1.3e-85
Identity = 164/192 (85.42%), Postives = 169/192 (88.02%), Query Frame = 1 

Query: 1   MTRNFSLIQILLLVFACQCCA---VIFDDVTGTQNLLKGIVPKANKQFLRPAESPRHLGF 60
           MTRNFSLIQILLLVFA +CCA    IF D   TQ LL GIVPK N+QFLRPAE+P HLGF
Sbjct: 1   MTRNFSLIQILLLVFAWECCARAAAIFIDTINTQILLNGIVPKVNEQFLRPAEAPWHLGF 60

Query: 61  STLPNIGG-RVNDIKANVDLNENGGSVFDVTKHGAKGDGETDDAHAFMTTWIAACRNTVG 120
           STLPNIGG  VNDIK NVDLNENGG VFDVTKHGAK DGETDDA AFMTTWIAACRNTVG
Sbjct: 61  STLPNIGGGTVNDIKVNVDLNENGGLVFDVTKHGAKADGETDDAQAFMTTWIAACRNTVG 120

Query: 121 PTKFLIPQGTFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSPEWFSIEDITGFIL 180
           P KFLIPQ  FLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSS EWFSIED+TGFIL
Sbjct: 121 PAKFLIPQDIFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSSEWFSIEDVTGFIL 180

Query: 181 TGSGVFDGQGLS 189
           TGSGVFDGQG+S
Sbjct: 181 TGSGVFDGQGVS 192

The following BLAST results are available for this feature:
BLAST of Csa7G398720 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PGLR1_ARATH1.6e-2748.06Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana GN=PGA3 PE=2 SV=1[more]
PGLR3_MAIZE2.1e-2443.17Exopolygalacturonase OS=Zea mays GN=PG2C PE=2 SV=1[more]
PGLR2_MAIZE2.3e-2342.54Exopolygalacturonase OS=Zea mays GN=PG9 PE=2 SV=1[more]
PGLR1_MAIZE2.3e-2342.54Exopolygalacturonase OS=Zea mays GN=PG1 PE=1 SV=1[more]
PGLR2_PLAAC6.4e-2142.40Exopolygalacturonase (Fragment) OS=Platanus acerifolia GN=plaa2 PE=1 SV=1[more]
BLAST of Csa7G398720 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KAZ2_CUCSA3.5e-127100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G398720 PE=3 SV=1[more]
A0A0A0K588_CUCSA5.5e-10487.62Uncharacterized protein OS=Cucumis sativus GN=Csa_7G353000 PE=3 SV=1[more]
A0A0A0KMA6_CUCSA1.3e-8991.91Uncharacterized protein OS=Cucumis sativus GN=Csa_5G222970 PE=3 SV=1[more]
A0A0A0K5I2_CUCSA8.8e-8685.42Uncharacterized protein OS=Cucumis sativus GN=Csa_7G398220 PE=3 SV=1[more]
A0A0A0K5G0_CUCSA3.2e-7267.92Uncharacterized protein OS=Cucumis sativus GN=Csa_7G375750 PE=3 SV=1[more]
BLAST of Csa7G398720 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G02790.18.8e-2948.06 polygalacturonase 4[more]
AT2G15450.15.9e-2541.79 Pectin lyase-like superfamily protein[more]
AT2G15460.15.9e-2541.79 Pectin lyase-like superfamily protein[more]
AT2G26620.12.9e-2441.94 Pectin lyase-like superfamily protein[more]
AT2G15470.18.5e-2441.04 Pectin lyase-like superfamily protein[more]
BLAST of Csa7G398720 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700189728|gb|KGN44961.1|5.0e-127100.00hypothetical protein Csa_7G398720 [Cucumis sativus][more]
gi|778708423|ref|XP_011656188.1|2.4e-10590.29PREDICTED: exopolygalacturonase-like [Cucumis sativus][more]
gi|700189405|gb|KGN44638.1|7.8e-10487.62hypothetical protein Csa_7G353000 [Cucumis sativus][more]
gi|700195561|gb|KGN50738.1|1.9e-8991.91hypothetical protein Csa_5G222970 [Cucumis sativus][more]
gi|700189727|gb|KGN44960.1|1.3e-8585.42hypothetical protein Csa_7G398220 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000743Glyco_hydro_28
IPR011050Pectin_lyase_fold/virulence
IPR012334Pectin_lyas_fold
Vocabulary: Molecular Function
TermDefinition
GO:0004650polygalacturonase activity
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071555 cell wall organization
biological_process GO:0005982 starch metabolic process
biological_process GO:0005985 sucrose metabolic process
biological_process GO:0005975 carbohydrate metabolic process
cellular_component GO:0005576 extracellular region
molecular_function GO:0004650 polygalacturonase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa7G398720.1Csa7G398720.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000743Glycoside hydrolase, family 28PFAMPF00295Glyco_hydro_28coord: 115..207
score: 1.7
IPR011050Pectin lyase fold/virulence factorunknownSSF51126Pectin lyase-likecoord: 82..191
score: 2.3
IPR012334Pectin lyase foldGENE3DG3DSA:2.160.20.10coord: 81..200
score: 2.9
NoneNo IPR availablePANTHERPTHR31375FAMILY NOT NAMEDcoord: 19..205
score: 2.4
NoneNo IPR availablePANTHERPTHR31375:SF16SUBFAMILY NOT NAMEDcoord: 19..205
score: 2.4
NoneNo IPR availablePROFILEPS51257PROKAR_LIPOPROTEINcoord: 1..17
score: