Csa7G398170 (gene) Cucumber (Chinese Long) v2
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGTTCTCTACATGCAGTTTTCTTCTCACTTTTGGTCATCAGTATTATTGTTGGTTCAGCTAATGGTGATATCTATGATGGTGGGTCTTACGATTCTATGACACCCAAATTGGCTAAGGATCAAGAAAGGCTTCTCTCTACCATGATTGGCATTGAAGGAATTATCCTTTACAAATTTGGTTCATCAATTTCCCCTCTTCAAGGTAAGCTTTATATATATATATATATCCACCAGACTAGAAGTTTATATACCAAAATAATCATAAATATTACAAAATATTATTTACGATATGTTTATATAGATATTGTTATATTTATAAATTTTAGCAGTTTTACGATTTAAAATTATATTTTTTCAATTTTGACATAACAATTGTTTAGAAATACTGGAACATATTCATCTTTGCATATTTGAAAACTATTAAAGTCTTTGCGTGGATAGCACAATTTCTTTTTTCAATTTATTTATTACTTTTTTTAAAAGCATATAGATAATTTATGTCCGATTTTGTTTTTTTAAGTTATTTTCCTTCTTTTCTTACTATAGTTTACATTTTTATTTAGTAGGAAGATTGAGTTCTTAACTAATTTTTAGATATAAAAATAAGATTTTAAAAAGCTATATATGTTTTACACATGCAGGAGGTTTGGCAAGAATAACATGTAAAACAGTGGATGAGTATGGTTATGAGGCAGCTTCTTACACATTTTTAAGTGAGTCAAGTGATGAAAATGGCTATTTCTTGGCAACATTATCTCCTTCAGAGGTAGAAGACAAGAGAGAATTGAAGGAATGCAAAGCTTTTCTAGAGGTCTCACCATTAGAGAACTGTCAATCTCCTTCTGACCTCAACAATGGAGTCTCTGGTGCTCTTCTCCATTCTTACAAATTTTTGGTTCATAATAACATGAAACTCTTCTCTGTTGGGCCTTTCCTTTTCACTTGCCAAACTTAA ATGGGTTCTCTACATGCAGTTTTCTTCTCACTTTTGGTCATCAGTATTATTGTTGGTTCAGCTAATGGTGATATCTATGATGGTGGGTCTTACGATTCTATGACACCCAAATTGGCTAAGGATCAAGAAAGGCTTCTCTCTACCATGATTGGCATTGAAGGAATTATCCTTTACAAATTTGGTTCATCAATTTCCCCTCTTCAAGGAGGTTTGGCAAGAATAACATGTAAAACAGTGGATGAGTATGGTTATGAGGCAGCTTCTTACACATTTTTAAGTGAGTCAAGTGATGAAAATGGCTATTTCTTGGCAACATTATCTCCTTCAGAGGTAGAAGACAAGAGAGAATTGAAGGAATGCAAAGCTTTTCTAGAGGTCTCACCATTAGAGAACTGTCAATCTCCTTCTGACCTCAACAATGGAGTCTCTGGTGCTCTTCTCCATTCTTACAAATTTTTGGTTCATAATAACATGAAACTCTTCTCTGTTGGGCCTTTCCTTTTCACTTGCCAAACTTAA ATGGGTTCTCTACATGCAGTTTTCTTCTCACTTTTGGTCATCAGTATTATTGTTGGTTCAGCTAATGGTGATATCTATGATGGTGGGTCTTACGATTCTATGACACCCAAATTGGCTAAGGATCAAGAAAGGCTTCTCTCTACCATGATTGGCATTGAAGGAATTATCCTTTACAAATTTGGTTCATCAATTTCCCCTCTTCAAGGAGGTTTGGCAAGAATAACATGTAAAACAGTGGATGAGTATGGTTATGAGGCAGCTTCTTACACATTTTTAAGTGAGTCAAGTGATGAAAATGGCTATTTCTTGGCAACATTATCTCCTTCAGAGGTAGAAGACAAGAGAGAATTGAAGGAATGCAAAGCTTTTCTAGAGGTCTCACCATTAGAGAACTGTCAATCTCCTTCTGACCTCAACAATGGAGTCTCTGGTGCTCTTCTCCATTCTTACAAATTTTTGGTTCATAATAACATGAAACTCTTCTCTGTTGGGCCTTTCCTTTTCACTTGCCAAACTTAA MGSLHAVFFSLLVISIIVGSANGDIYDGGSYDSMTPKLAKDQERLLSTMIGIEGIILYKFGSSISPLQGGLARITCKTVDEYGYEAASYTFLSESSDENGYFLATLSPSEVEDKRELKECKAFLEVSPLENCQSPSDLNNGVSGALLHSYKFLVHNNMKLFSVGPFLFTCQT*
BLAST of Csa7G398170 vs. Swiss-Prot
Match: PRP3_ARATH (Proline-rich protein 3 OS=Arabidopsis thaliana GN=PRP3 PE=2 SV=1) HSP 1 Score: 78.6 bits (192), Expect = 7.6e-14 Identity = 41/120 (34.17%), Postives = 63/120 (52.50%), Query Frame = 1
BLAST of Csa7G398170 vs. Swiss-Prot
Match: PRP1_ARATH (Proline-rich protein 1 OS=Arabidopsis thaliana GN=PRP1 PE=2 SV=1) HSP 1 Score: 73.2 bits (178), Expect = 3.2e-12 Identity = 41/118 (34.75%), Postives = 57/118 (48.31%), Query Frame = 1
BLAST of Csa7G398170 vs. TrEMBL
Match: A0A0A0K5H5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G398170 PE=4 SV=1) HSP 1 Score: 344.4 bits (882), Expect = 8.3e-92 Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 1
BLAST of Csa7G398170 vs. TrEMBL
Match: I3TAG1_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1) HSP 1 Score: 171.8 bits (434), Expect = 7.4e-40 Identity = 84/170 (49.41%), Postives = 115/170 (67.65%), Query Frame = 1
BLAST of Csa7G398170 vs. TrEMBL
Match: B9SAV3_RICCO (Structural constituent of cell wall, putative OS=Ricinus communis GN=RCOM_1179460 PE=4 SV=1) HSP 1 Score: 170.2 bits (430), Expect = 2.1e-39 Identity = 87/156 (55.77%), Postives = 115/156 (73.72%), Query Frame = 1
BLAST of Csa7G398170 vs. TrEMBL
Match: A0A0B2RFK1_GLYSO (Pistil-specific extensin-like protein OS=Glycine soja GN=glysoja_037705 PE=4 SV=1) HSP 1 Score: 165.2 bits (417), Expect = 6.9e-38 Identity = 82/171 (47.95%), Postives = 113/171 (66.08%), Query Frame = 1
BLAST of Csa7G398170 vs. TrEMBL
Match: V7BH16_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G218200g PE=4 SV=1) HSP 1 Score: 163.3 bits (412), Expect = 2.6e-37 Identity = 84/171 (49.12%), Postives = 114/171 (66.67%), Query Frame = 1
BLAST of Csa7G398170 vs. TAIR10
Match: AT2G47540.1 (AT2G47540.1 Pollen Ole e 1 allergen and extensin family protein) HSP 1 Score: 147.5 bits (371), Expect = 7.5e-36 Identity = 69/131 (52.67%), Postives = 99/131 (75.57%), Query Frame = 1
BLAST of Csa7G398170 vs. TAIR10
Match: AT4G02270.1 (AT4G02270.1 root hair specific 13) HSP 1 Score: 112.5 bits (280), Expect = 2.7e-25 Identity = 63/165 (38.18%), Postives = 84/165 (50.91%), Query Frame = 1
BLAST of Csa7G398170 vs. TAIR10
Match: AT2G47530.1 (AT2G47530.1 Pollen Ole e 1 allergen and extensin family protein) HSP 1 Score: 86.3 bits (212), Expect = 2.1e-17 Identity = 59/173 (34.10%), Postives = 85/173 (49.13%), Query Frame = 1
BLAST of Csa7G398170 vs. TAIR10
Match: AT3G62680.1 (AT3G62680.1 proline-rich protein 3) HSP 1 Score: 78.6 bits (192), Expect = 4.3e-15 Identity = 41/120 (34.17%), Postives = 63/120 (52.50%), Query Frame = 1
BLAST of Csa7G398170 vs. TAIR10
Match: AT1G54970.1 (AT1G54970.1 proline-rich protein 1) HSP 1 Score: 73.2 bits (178), Expect = 1.8e-13 Identity = 41/118 (34.75%), Postives = 57/118 (48.31%), Query Frame = 1
BLAST of Csa7G398170 vs. NCBI nr
Match: gi|778728091|ref|XP_011659366.1| (PREDICTED: proline-rich protein 3-like [Cucumis sativus]) HSP 1 Score: 344.4 bits (882), Expect = 1.2e-91 Identity = 172/172 (100.00%), Postives = 172/172 (100.00%), Query Frame = 1
BLAST of Csa7G398170 vs. NCBI nr
Match: gi|659101333|ref|XP_008451553.1| (PREDICTED: proline-rich protein 3-like [Cucumis melo]) HSP 1 Score: 328.9 bits (842), Expect = 5.2e-87 Identity = 166/172 (96.51%), Postives = 166/172 (96.51%), Query Frame = 1
BLAST of Csa7G398170 vs. NCBI nr
Match: gi|502117768|ref|XP_004495936.1| (PREDICTED: proline-rich protein 3-like [Cicer arietinum]) HSP 1 Score: 172.2 bits (435), Expect = 8.1e-40 Identity = 83/171 (48.54%), Postives = 118/171 (69.01%), Query Frame = 1
BLAST of Csa7G398170 vs. NCBI nr
Match: gi|388522883|gb|AFK49503.1| (unknown [Lotus japonicus]) HSP 1 Score: 171.8 bits (434), Expect = 1.1e-39 Identity = 84/170 (49.41%), Postives = 115/170 (67.65%), Query Frame = 1
BLAST of Csa7G398170 vs. NCBI nr
Match: gi|255564250|ref|XP_002523122.1| (PREDICTED: proline-rich protein 3 [Ricinus communis]) HSP 1 Score: 170.2 bits (430), Expect = 3.1e-39 Identity = 87/156 (55.77%), Postives = 115/156 (73.72%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |