Csa7G396490 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa7G396490
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr7 : 15291067 .. 15291748 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGAGGAAGTTCGAACTTACTTCTCAAGCCAAAGATGCCGACAAAGAAGTGTGAACGACGACGAGCTTGAACAGATGTAGTTGTATCTGGAATTATATAGTGACGGTCCTCAAGTATAACTAAGATGTCAATATGTCCTGTTAAAAATAAATAACATAAACGTTGAGAACAAAGTGCTCAAGAAAGTGATTCACTGATATCATCCCTTATCTAACCGATGTAAAACTTAACATATAGTATAAATAAATCAGCGTGACCTTTCAAACAAGGTCCACAAGAACAACACAACTGCTTGAATGCTTCAAATAAAAACTCCCCTAAAATAATCAGTAAAGAACAACTCAAAAACATATGCACAACTCTAGCATAAGAAACCACAATCAACATAAAGAAGAAAAAGGAAAAACCCATGCTTTTGTAGGATCCGCGACTTTAGAGACAACAGCAAAACAGAGAACATTCTAAAACATCTTCTGATGCTGATGCTGTCGACTCTGCCTATGAGTCAACTACCATCGCTAGCTTTGATGCTGCTGCCTCATCGCCGTTGCCGGAAGGATTTTCAGAACACCGTCTGTATGTTTGGGGATTGGAGAACCGGTTTATAGCAGGGGAGAAGGAGAACGCTGACACTTTTTTTAAGTTCAAGGAGAGTTTGTCCAGTGGCAGGTCGTGTTAG

mRNA sequence

ATGAGGAGGAAGTTCGAACTTACTTCTCAAGCCAAAGATGCCGACAAAGAAAGACAACAGCAAAACAGAGAACATTCTAAAACATCTTCTGATGCTGATGCTGTCGACTCTGCCTATGAGTCAACTACCATCGCTAGCTTTGATGCTGCTGCCTCATCGCCGTTGCCGGAAGGATTTTCAGAACACCGTCTGTATGTTTGGGGATTGGAGAACCGGTTTATAGCAGGGGAGAAGGAGAACGCTGACACTTTTTTTAAGTTCAAGGAGAGTTTGTCCAGTGGCAGGTCGTGTTAG

Coding sequence (CDS)

ATGAGGAGGAAGTTCGAACTTACTTCTCAAGCCAAAGATGCCGACAAAGAAAGACAACAGCAAAACAGAGAACATTCTAAAACATCTTCTGATGCTGATGCTGTCGACTCTGCCTATGAGTCAACTACCATCGCTAGCTTTGATGCTGCTGCCTCATCGCCGTTGCCGGAAGGATTTTCAGAACACCGTCTGTATGTTTGGGGATTGGAGAACCGGTTTATAGCAGGGGAGAAGGAGAACGCTGACACTTTTTTTAAGTTCAAGGAGAGTTTGTCCAGTGGCAGGTCGTGTTAG

Protein sequence

MRRKFELTSQAKDADKERQQQNREHSKTSSDADAVDSAYESTTIASFDAAASSPLPEGFSEHRLYVWGLENRFIAGEKENADTFFKFKESLSSGRSC*

Homology

[Close]

BLAST of Csa7G396490 vs. TrEMBL
Match: A0A0A0K7S6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G396490 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 2.7e-47
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1


Query: 1  MRRKFELTSQAKDADKERQQQNREHSKTSSDADAVDSAYESTTIASFDAAASSPLPEGFS 60
          MRRKFELTSQAKDADKERQQQNREHSKTSSDADAVDSAYESTTIASFDAAASSPLPEGFS
Sbjct: 1  MRRKFELTSQAKDADKERQQQNREHSKTSSDADAVDSAYESTTIASFDAAASSPLPEGFS 60

Query: 61 EHRLYVWGLENRFIAGEKENADTFFKFKESLSSGRSC 98
          EHRLYVWGLENRFIAGEKENADTFFKFKESLSSGRSC
Sbjct: 61 EHRLYVWGLENRFIAGEKENADTFFKFKESLSSGRSC 97

[Close]

BLAST of Csa7G396490 vs. NCBI nr
Match: gi|700189701|gb|KGN44934.1| (hypothetical protein Csa_7G396490 [Cucumis sativus])

HSP 1 Score: 195.7 bits (496), Expect = 3.9e-47
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1


Query: 1  MRRKFELTSQAKDADKERQQQNREHSKTSSDADAVDSAYESTTIASFDAAASSPLPEGFS 60
          MRRKFELTSQAKDADKERQQQNREHSKTSSDADAVDSAYESTTIASFDAAASSPLPEGFS
Sbjct: 1  MRRKFELTSQAKDADKERQQQNREHSKTSSDADAVDSAYESTTIASFDAAASSPLPEGFS 60

Query: 61 EHRLYVWGLENRFIAGEKENADTFFKFKESLSSGRSC 98
          EHRLYVWGLENRFIAGEKENADTFFKFKESLSSGRSC
Sbjct: 61 EHRLYVWGLENRFIAGEKENADTFFKFKESLSSGRSC 97

The following BLAST results are available for this feature:

BLAST of Csa7G396490 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7S6_CUCSA	2.7e-47	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G396490 PE=4 SV=1	[more]

BLAST of Csa7G396490 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700189701\|gb\|KGN44934.1\|	3.9e-47	100.00	hypothetical protein Csa_7G396490 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa7G396490.1	Csa7G396490.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 4..24 scor

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa7G396490	Cucurbita pepo (Zucchini)	cpecuB161
Csa7G396490	Cucurbita pepo (Zucchini)	cpecuB343
Csa7G396490	Bottle gourd (USVL1VR-Ls)	culsiB503
Csa7G396490	Bottle gourd (USVL1VR-Ls)	culsiB516
Csa7G396490	Cucumber (Gy14) v2	cgybcuB323
Csa7G396490	Melon (DHL92) v3.6.1	cumedB511
Csa7G396490	Silver-seed gourd	carcuB0119
Csa7G396490	Silver-seed gourd	carcuB0594
Csa7G396490	Watermelon (97103) v2	cuwmbB517
Csa7G396490	Watermelon (97103) v2	cuwmbB539
Csa7G396490	Watermelon (97103) v2	cuwmbB572
Csa7G396490	Wax gourd	cuwgoB650
Csa7G396490	Wax gourd	cuwgoB657
Csa7G396490	Wax gourd	cuwgoB691
Csa7G396490	Cucumber (Chinese Long) v2	cucuB149
Csa7G396490	Cucumber (Gy14) v1	cgycuB312
Csa7G396490	Cucurbita maxima (Rimu)	cmacuB388
Csa7G396490	Cucurbita maxima (Rimu)	cmacuB914
Csa7G396490	Cucurbita moschata (Rifu)	cmocuB378
Csa7G396490	Cucurbita moschata (Rifu)	cmocuB900
Csa7G396490	Melon (DHL92) v3.5.1	cumeB532
Csa7G396490	Watermelon (Charleston Gray)	cuwcgB526
Csa7G396490	Watermelon (Charleston Gray)	cuwcgB531
Csa7G396490	Watermelon (97103) v1	cuwmB568
Csa7G396490	Watermelon (97103) v1	cuwmB588
Csa7G396490	Watermelon (97103) v1	cuwmB574