Csa7G390180 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa7G390180
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	UDP-N-acetylglucosamine-peptide N-acetylglucosaminyltransferase 110 kDa subunit; contains IPR011990 (Tetratricopeptide-like helical)
Location	Chr7 : 14645139 .. 14645360 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTCAAAGACATTAGGACTACAACTTGGTTATGCACCTGCATTTAACAATCTAGGATTGGTGTTTATTGCTGAGGGTCAATGGGAGGAGGCTAAGTATTGTTTTGAGAAAGCTCTCGAGGCTGATCCGTTACTCGATTCAGCTAACTCGAACTTGCTTAAAACCGTAGCCGTACATCGACTATGTAATAGCCTATCATCGTGTCATGTTAAAGATTGA

mRNA sequence

ATGTTCTCAAAGACATTAGGACTACAACTTGGTTATGCACCTGCATTTAACAATCTAGGATTGGTGTTTATTGCTGAGGGTCAATGGGAGGAGGCTAAGTATTGTTTTGAGAAAGCTCTCGAGGCTGATCCGTTACTCGATTCAGCTAACTCGAACTTGCTTAAAACCGTAGCCGTACATCGACTATGTAATAGCCTATCATCGTGTCATGTTAAAGATTGA

Coding sequence (CDS)

ATGTTCTCAAAGACATTAGGACTACAACTTGGTTATGCACCTGCATTTAACAATCTAGGATTGGTGTTTATTGCTGAGGGTCAATGGGAGGAGGCTAAGTATTGTTTTGAGAAAGCTCTCGAGGCTGATCCGTTACTCGATTCAGCTAACTCGAACTTGCTTAAAACCGTAGCCGTACATCGACTATGTAATAGCCTATCATCGTGTCATGTTAAAGATTGA

Protein sequence

MFSKTLGLQLGYAPAFNNLGLVFIAEGQWEEAKYCFEKALEADPLLDSANSNLLKTVAVHRLCNSLSSCHVKD*

Homology

[Close]

BLAST of Csa7G390180 vs. TrEMBL
Match: A0A0A0K7G7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G390180 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 3.4e-34
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1


Query: 1  MFSKTLGLQLGYAPAFNNLGLVFIAEGQWEEAKYCFEKALEADPLLDSANSNLLKTVAVH 60
          MFSKTLGLQLGYAPAFNNLGLVFIAEGQWEEAKYCFEKALEADPLLDSANSNLLKTVAVH
Sbjct: 1  MFSKTLGLQLGYAPAFNNLGLVFIAEGQWEEAKYCFEKALEADPLLDSANSNLLKTVAVH 60

Query: 61 RLCNSLSSCHVKD 74
          RLCNSLSSCHVKD
Sbjct: 61 RLCNSLSSCHVKD 73

[Close]

BLAST of Csa7G390180 vs. TrEMBL
Match: A0A0A0LTP6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050030 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 3.4e-34
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1


Query: 1   MFSKTLGLQLGYAPAFNNLGLVFIAEGQWEEAKYCFEKALEADPLLDSANSNLLKTVAVH 60
           MFSKTLGLQLGYAPAFNNLGLVFIAEGQWEEAKYCFEKALEADPLLDSANSNLLKTVAVH
Sbjct: 575 MFSKTLGLQLGYAPAFNNLGLVFIAEGQWEEAKYCFEKALEADPLLDSANSNLLKTVAVH 634

Query: 61  RLCNSLSSCHVKD 74
           RLCNSLSSCHVKD
Sbjct: 635 RLCNSLSSCHVKD 647

[Close]

BLAST of Csa7G390180 vs. TrEMBL
Match: A0A0A0L976_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G170010 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 1.9e-32
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1


Query: 1   MFSKTLGLQLGYAPAFNNLGLVFIAEGQWEEAKYCFEKALEADPLLDSANSNLLKTVAVH 60
           MFSKTLGLQLGYAPAFNNLGLVFIAEGQWEEAKYCFEKALEADPLLDSANSNLLKTVAVH
Sbjct: 489 MFSKTLGLQLGYAPAFNNLGLVFIAEGQWEEAKYCFEKALEADPLLDSANSNLLKTVAVH 548

Query: 61  RLCNSLSSCH 71
           RLCNSLSSCH
Sbjct: 549 RLCNSLSSCH 558

[Close]

BLAST of Csa7G390180 vs. TrEMBL
Match: A0A061FZ59_THECC (Tetratricopeptide repeat (TPR)-containing protein OS=Theobroma cacao GN=TCM_014545 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 7.8e-23
Identity = 52/73 (71.23%), Postives = 65/73 (89.04%), Query Frame = 1


Query: 1   MFSKTLGLQLGYAPAFNNLGLVFIAEGQWEEAKYCFEKALEADPLLDSANSNLLKTVAVH 60
           MF+K+L LQ GYAPAFNNLGLVF+AEGQWEEAK+CF+KAL++DPLLD+A SN++KTVA+ 
Sbjct: 581 MFTKSLELQPGYAPAFNNLGLVFVAEGQWEEAKFCFDKALQSDPLLDAAKSNMIKTVALS 640

Query: 61  RLCNSLSSCHVKD 74
           RLC  LSS  ++D
Sbjct: 641 RLCAGLSSFFIQD 653

[Close]

BLAST of Csa7G390180 vs. TrEMBL
Match: A0A0D2U6I8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G204100 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 8.6e-22
Identity = 51/73 (69.86%), Postives = 63/73 (86.30%), Query Frame = 1


Query: 1   MFSKTLGLQLGYAPAFNNLGLVFIAEGQWEEAKYCFEKALEADPLLDSANSNLLKTVAVH 60
           MF+K+L LQ GYAPAFNNLGLVF+AEG WEEAK+CF+KAL++DPLLD+A SN++KTVA+ 
Sbjct: 585 MFTKSLELQPGYAPAFNNLGLVFVAEGHWEEAKFCFDKALQSDPLLDAAKSNMIKTVALS 644

Query: 61  RLCNSLSSCHVKD 74
           RLC  LSS  + D
Sbjct: 645 RLCAGLSSFIIPD 657

[Close]

BLAST of Csa7G390180 vs. TAIR10
Match: AT5G63200.1 (AT5G63200.1 tetratricopeptide repeat (TPR)-containing protein)

HSP 1 Score: 97.8 bits (242), Expect = 2.9e-21
Identity = 48/71 (67.61%), Postives = 53/71 (74.65%), Query Frame = 1


Query: 1   MFSKTLGLQLGYAPAFNNLGLVFIAEGQWEEAKYCFEKALEADPLLDSANSNLLKTVAVH 60
           MFSK L L+ GYAPA+NNLGLVF+AE +WEEAK CFEK+LEAD LLD+A SNLLK   + 
Sbjct: 575 MFSKALELKPGYAPAYNNLGLVFVAERRWEEAKSCFEKSLEADSLLDAAQSNLLKATTMS 634

Query: 61  RLCNSLSSCHV 72
           RLC   SS  V
Sbjct: 635 RLCTCFSSSTV 645

[Close]

BLAST of Csa7G390180 vs. NCBI nr
Match: gi|778657980|ref|XP_011651897.1| (PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Cucumis sativus])

HSP 1 Score: 151.8 bits (382), Expect = 4.8e-34
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1


Query: 1   MFSKTLGLQLGYAPAFNNLGLVFIAEGQWEEAKYCFEKALEADPLLDSANSNLLKTVAVH 60
           MFSKTLGLQLGYAPAFNNLGLVFIAEGQWEEAKYCFEKALEADPLLDSANSNLLKTVAVH
Sbjct: 575 MFSKTLGLQLGYAPAFNNLGLVFIAEGQWEEAKYCFEKALEADPLLDSANSNLLKTVAVH 634

Query: 61  RLCNSLSSCHVKD 74
           RLCNSLSSCHVKD
Sbjct: 635 RLCNSLSSCHVKD 647

[Close]

BLAST of Csa7G390180 vs. NCBI nr
Match: gi|700189606|gb|KGN44839.1| (hypothetical protein Csa_7G390180 [Cucumis sativus])

HSP 1 Score: 151.8 bits (382), Expect = 4.8e-34
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1


Query: 1  MFSKTLGLQLGYAPAFNNLGLVFIAEGQWEEAKYCFEKALEADPLLDSANSNLLKTVAVH 60
          MFSKTLGLQLGYAPAFNNLGLVFIAEGQWEEAKYCFEKALEADPLLDSANSNLLKTVAVH
Sbjct: 1  MFSKTLGLQLGYAPAFNNLGLVFIAEGQWEEAKYCFEKALEADPLLDSANSNLLKTVAVH 60

Query: 61 RLCNSLSSCHVKD 74
          RLCNSLSSCHVKD
Sbjct: 61 RLCNSLSSCHVKD 73

[Close]

BLAST of Csa7G390180 vs. NCBI nr
Match: gi|700202059|gb|KGN57192.1| (hypothetical protein Csa_3G170010 [Cucumis sativus])

HSP 1 Score: 146.0 bits (367), Expect = 2.7e-32
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1


Query: 1   MFSKTLGLQLGYAPAFNNLGLVFIAEGQWEEAKYCFEKALEADPLLDSANSNLLKTVAVH 60
           MFSKTLGLQLGYAPAFNNLGLVFIAEGQWEEAKYCFEKALEADPLLDSANSNLLKTVAVH
Sbjct: 489 MFSKTLGLQLGYAPAFNNLGLVFIAEGQWEEAKYCFEKALEADPLLDSANSNLLKTVAVH 548

Query: 61  RLCNSLSSCH 71
           RLCNSLSSCH
Sbjct: 549 RLCNSLSSCH 558

[Close]

BLAST of Csa7G390180 vs. NCBI nr
Match: gi|659067387|ref|XP_008439186.1| (PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Cucumis melo])

HSP 1 Score: 141.7 bits (356), Expect = 5.0e-31
Identity = 69/73 (94.52%), Postives = 70/73 (95.89%), Query Frame = 1


Query: 1   MFSKTLGLQLGYAPAFNNLGLVFIAEGQWEEAKYCFEKALEADPLLDSANSNLLKTVAVH 60
           MFSK+L LQ GYAPAFNNLGLVFIAEGQWE AKYCFEKALEADPLLDSANSNLLKTVAVH
Sbjct: 575 MFSKSLELQPGYAPAFNNLGLVFIAEGQWEGAKYCFEKALEADPLLDSANSNLLKTVAVH 634

Query: 61  RLCNSLSSCHVKD 74
           RLCNSLSSCHVKD
Sbjct: 635 RLCNSLSSCHVKD 647

[Close]

BLAST of Csa7G390180 vs. NCBI nr
Match: gi|590669690|ref|XP_007037847.1| (Tetratricopeptide repeat (TPR)-containing protein [Theobroma cacao])

HSP 1 Score: 114.0 bits (284), Expect = 1.1e-22
Identity = 52/73 (71.23%), Postives = 65/73 (89.04%), Query Frame = 1


Query: 1   MFSKTLGLQLGYAPAFNNLGLVFIAEGQWEEAKYCFEKALEADPLLDSANSNLLKTVAVH 60
           MF+K+L LQ GYAPAFNNLGLVF+AEGQWEEAK+CF+KAL++DPLLD+A SN++KTVA+ 
Sbjct: 581 MFTKSLELQPGYAPAFNNLGLVFVAEGQWEEAKFCFDKALQSDPLLDAAKSNMIKTVALS 640

Query: 61  RLCNSLSSCHVKD 74
           RLC  LSS  ++D
Sbjct: 641 RLCAGLSSFFIQD 653

The following BLAST results are available for this feature:

BLAST of Csa7G390180 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7G7_CUCSA	3.4e-34	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G390180 PE=4 SV=1	[more]
A0A0A0LTP6_CUCSA	3.4e-34	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G050030 PE=4 SV=1	[more]
A0A0A0L976_CUCSA	1.9e-32	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G170010 PE=4 SV=1	[more]
A0A061FZ59_THECC	7.8e-23	71.23	Tetratricopeptide repeat (TPR)-containing protein OS=Theobroma cacao GN=TCM_0145...	[more]
A0A0D2U6I8_GOSRA	8.6e-22	69.86	Uncharacterized protein OS=Gossypium raimondii GN=B456_008G204100 PE=4 SV=1	[more]

BLAST of Csa7G390180 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G63200.1	2.9e-21	67.61	tetratricopeptide repeat (TPR)-containing protein	[more]

BLAST of Csa7G390180 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778657980\|ref\|XP_011651897.1\|	4.8e-34	100.00	PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransfe...	[more]
gi\|700189606\|gb\|KGN44839.1\|	4.8e-34	100.00	hypothetical protein Csa_7G390180 [Cucumis sativus]	[more]
gi\|700202059\|gb\|KGN57192.1\|	2.7e-32	100.00	hypothetical protein Csa_3G170010 [Cucumis sativus]	[more]
gi\|659067387\|ref\|XP_008439186.1\|	5.0e-31	94.52	PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransfe...	[more]
gi\|590669690\|ref\|XP_007037847.1\|	1.1e-22	71.23	Tetratricopeptide repeat (TPR)-containing protein [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001440	TPR_1
IPR011990	TPR-like_helical_dom_sf
IPR013026	TPR-contain_dom
IPR019734	TPR_repeat

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006537	glutamate biosynthetic process
biological_process	GO:0000956	nuclear-transcribed mRNA catabolic process
biological_process	GO:0016310	phosphorylation
biological_process	GO:0006561	proline biosynthetic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004349	glutamate 5-kinase activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0016757	transferase activity, transferring glycosyl groups

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa7G390180.1	Csa7G390180.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001440	Tetratricopeptide repeat 1	PFAM	PF00515	TPR_1	coord: 13..44 score: 1.
IPR011990	Tetratricopeptide-like helical domain	GENE3D	G3DSA:1.25.40.10		coord: 2..53 score: 2.
IPR011990	Tetratricopeptide-like helical domain	unknown	SSF48452	TPR-like	coord: 2..52 score: 2.0
IPR013026	Tetratricopeptide repeat-containing domain	PROFILE	PS50293	TPR_REGION	coord: 1..46 score: 12
IPR019734	Tetratricopeptide repeat	SMART	SM00028	tpr_5	coord: 13..46 score: 5.
IPR019734	Tetratricopeptide repeat	PROFILE	PS50005	TPR	coord: 13..46 score: 11

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa7G390180	Wax gourd	cuwgoB693
Csa7G390180	Cucumber (Gy14) v1	cgycuB085
Csa7G390180	Cucurbita maxima (Rimu)	cmacuB385
Csa7G390180	Cucurbita maxima (Rimu)	cmacuB388
Csa7G390180	Cucurbita maxima (Rimu)	cmacuB914
Csa7G390180	Cucurbita maxima (Rimu)	cmacuB920
Csa7G390180	Cucurbita moschata (Rifu)	cmocuB375
Csa7G390180	Cucurbita moschata (Rifu)	cmocuB378
Csa7G390180	Cucurbita moschata (Rifu)	cmocuB900
Csa7G390180	Cucurbita moschata (Rifu)	cmocuB907
Csa7G390180	Melon (DHL92) v3.5.1	cumeB522
Csa7G390180	Melon (DHL92) v3.5.1	cumeB535
Csa7G390180	Watermelon (Charleston Gray)	cuwcgB517
Csa7G390180	Watermelon (97103) v1	cuwmB553
Csa7G390180	Cucurbita pepo (Zucchini)	cpecuB158
Csa7G390180	Cucurbita pepo (Zucchini)	cpecuB161
Csa7G390180	Cucurbita pepo (Zucchini)	cpecuB339
Csa7G390180	Cucurbita pepo (Zucchini)	cpecuB344
Csa7G390180	Bottle gourd (USVL1VR-Ls)	culsiB503
Csa7G390180	Bottle gourd (USVL1VR-Ls)	culsiB509
Csa7G390180	Cucumber (Gy14) v2	cgybcuB323
Csa7G390180	Melon (DHL92) v3.6.1	cumedB514
Csa7G390180	Silver-seed gourd	carcuB0117
Csa7G390180	Silver-seed gourd	carcuB0875
Csa7G390180	Watermelon (97103) v2	cuwmbB560