Csa7G390150 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa7G390150
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr7 : 14623232 .. 14623564 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AATAACAATGTGGGTGAAGCTGCAGCTTTCCATTTTCTCTAACAAAGAGGGTAATGGTTAACAAATCTTCTTCTCCCCAAGAATCCTCCATTTCAGGTTCTCTCTCTATTCCTTCATTTATTATTGTTGTTATTATTATTATTAATCTTCCAATTCCATCTTTCTTCTTCTGTTTGCCTCAATTTCGATCAATTCTATTCAGGAGTTTTGCCGCGCAATGAGAGACGGAATTGGGCAGCTTCTCCCTCTGATGTTCTTAATCATTTTGGAACCAGCGGCCTCTCCGTCGCCATCGCCACCGCCGTTACTCACTTGAAGTTCACTCCCACTTGA

mRNA sequence

ATGGTTAACAAATCTTCTTCTCCCCAAGAATCCTCCATTTCAGGAGTTTTGCCGCGCAATGAGAGACGGAATTGGGCAGCTTCTCCCTCTGATGTTCTTAATCATTTTGGAACCAGCGGCCTCTCCGTCGCCATCGCCACCGCCGTTACTCACTTGAAGTTCACTCCCACTTGA

Coding sequence (CDS)

ATGGTTAACAAATCTTCTTCTCCCCAAGAATCCTCCATTTCAGGAGTTTTGCCGCGCAATGAGAGACGGAATTGGGCAGCTTCTCCCTCTGATGTTCTTAATCATTTTGGAACCAGCGGCCTCTCCGTCGCCATCGCCACCGCCGTTACTCACTTGAAGTTCACTCCCACTTGA

Protein sequence

MVNKSSSPQESSISGVLPRNERRNWAASPSDVLNHFGTSGLSVAIATAVTHLKFTPT*

Homology

[Close]

BLAST of Csa7G390150 vs. TrEMBL
Match: A0A0A0KAK2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G390150 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.6e-23
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 1


Query: 1  MVNKSSSPQESSISGVLPRNERRNWAASPSDVLNHFGTSGLSVAIATAVTHLKFTPT 58
          MVNKSSSPQESSISGVLPRNERRNWAASPSDVLNHFGTSGLSVAIATAVTHLKFTPT
Sbjct: 1  MVNKSSSPQESSISGVLPRNERRNWAASPSDVLNHFGTSGLSVAIATAVTHLKFTPT 57

[Close]

BLAST of Csa7G390150 vs. TrEMBL
Match: A0A061DR63_THECC (Mitochondrial substrate carrier family protein ucpB isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_004517 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.1e-07
Identity = 27/47 (57.45%), Postives = 36/47 (76.60%), Query Frame = 1


Query: 5  SSSPQESSISGVLPRNERRNWAASPSDVLNHFGTSGLSVAIATAVTH 52
          +S+ + SS +G + RNE++NWA SPS  L HFGTSG SVA+AT +TH
Sbjct: 4  NSASRNSSFTGTVKRNEKQNWATSPSGALYHFGTSGFSVAVATGLTH 50

[Close]

BLAST of Csa7G390150 vs. TrEMBL
Match: A0A061DS42_THECC (Mitochondrial substrate carrier family protein ucpB isoform 1 OS=Theobroma cacao GN=TCM_004517 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.1e-07
Identity = 27/47 (57.45%), Postives = 36/47 (76.60%), Query Frame = 1


Query: 5  SSSPQESSISGVLPRNERRNWAASPSDVLNHFGTSGLSVAIATAVTH 52
          +S+ + SS +G + RNE++NWA SPS  L HFGTSG SVA+AT +TH
Sbjct: 4  NSASRNSSFTGTVKRNEKQNWATSPSGALYHFGTSGFSVAVATGLTH 50

[Close]

BLAST of Csa7G390150 vs. TrEMBL
Match: A0A072VN54_MEDTR (Substrate carrier family protein OS=Medicago truncatula GN=MTR_1g088995 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 4.7e-07
Identity = 26/47 (55.32%), Postives = 35/47 (74.47%), Query Frame = 1


Query: 5  SSSPQESSISGVLPRNERRNWAASPSDVLNHFGTSGLSVAIATAVTH 52
          + S   SS+SG    +E++NWA SPS V NHF TSG+SVA+AT++TH
Sbjct: 2  AGSDNNSSVSGTSSHDEKQNWAKSPSTVFNHFATSGISVAVATSITH 48

[Close]

BLAST of Csa7G390150 vs. TrEMBL
Match: A0A072VNQ6_MEDTR (Substrate carrier family protein OS=Medicago truncatula GN=MTR_1g088995 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 4.7e-07
Identity = 26/47 (55.32%), Postives = 35/47 (74.47%), Query Frame = 1


Query: 5  SSSPQESSISGVLPRNERRNWAASPSDVLNHFGTSGLSVAIATAVTH 52
          + S   SS+SG    +E++NWA SPS V NHF TSG+SVA+AT++TH
Sbjct: 2  AGSDNNSSVSGTSSHDEKQNWAKSPSTVFNHFATSGISVAVATSITH 48

[Close]

BLAST of Csa7G390150 vs. NCBI nr
Match: gi|700189603|gb|KGN44836.1| (hypothetical protein Csa_7G390150 [Cucumis sativus])

HSP 1 Score: 115.9 bits (289), Expect = 2.3e-23
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 1


Query: 1  MVNKSSSPQESSISGVLPRNERRNWAASPSDVLNHFGTSGLSVAIATAVTHLKFTPT 58
          MVNKSSSPQESSISGVLPRNERRNWAASPSDVLNHFGTSGLSVAIATAVTHLKFTPT
Sbjct: 1  MVNKSSSPQESSISGVLPRNERRNWAASPSDVLNHFGTSGLSVAIATAVTHLKFTPT 57

[Close]

BLAST of Csa7G390150 vs. NCBI nr
Match: gi|778727781|ref|XP_011659318.1| (PREDICTED: mitochondrial substrate carrier family protein ucpB isoform X2 [Cucumis sativus])

HSP 1 Score: 103.6 bits (257), Expect = 1.2e-19
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1


Query: 1  MVNKSSSPQESSISGVLPRNERRNWAASPSDVLNHFGTSGLSVAIATAVTH 52
          MVNKSSSPQESSISGVLPRNERRNWAASPSDVLNHFGTSGLSVAIATAVTH
Sbjct: 1  MVNKSSSPQESSISGVLPRNERRNWAASPSDVLNHFGTSGLSVAIATAVTH 51

[Close]

BLAST of Csa7G390150 vs. NCBI nr
Match: gi|778727778|ref|XP_004148885.2| (PREDICTED: mitochondrial substrate carrier family protein ucpB isoform X1 [Cucumis sativus])

HSP 1 Score: 103.6 bits (257), Expect = 1.2e-19
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1


Query: 1  MVNKSSSPQESSISGVLPRNERRNWAASPSDVLNHFGTSGLSVAIATAVTH 52
          MVNKSSSPQESSISGVLPRNERRNWAASPSDVLNHFGTSGLSVAIATAVTH
Sbjct: 1  MVNKSSSPQESSISGVLPRNERRNWAASPSDVLNHFGTSGLSVAIATAVTH 51

[Close]

BLAST of Csa7G390150 vs. NCBI nr
Match: gi|659101101|ref|XP_008451426.1| (PREDICTED: mitochondrial substrate carrier family protein ucpB isoform X1 [Cucumis melo])

HSP 1 Score: 101.7 bits (252), Expect = 4.5e-19
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 1


Query: 1  MVNKSSSPQESSISGVLPRNERRNWAASPSDVLNHFGTSGLSVAIATAVTH 52
          MVNKSSSPQESSISGVLPRNERRNWAASPSDVL+HFGTSGLSVAIATAVTH
Sbjct: 1  MVNKSSSPQESSISGVLPRNERRNWAASPSDVLHHFGTSGLSVAIATAVTH 51

[Close]

BLAST of Csa7G390150 vs. NCBI nr
Match: gi|590718182|ref|XP_007050759.1| (Mitochondrial substrate carrier family protein ucpB isoform 1 [Theobroma cacao])

HSP 1 Score: 62.4 bits (150), Expect = 3.0e-07
Identity = 27/47 (57.45%), Postives = 36/47 (76.60%), Query Frame = 1


Query: 5  SSSPQESSISGVLPRNERRNWAASPSDVLNHFGTSGLSVAIATAVTH 52
          +S+ + SS +G + RNE++NWA SPS  L HFGTSG SVA+AT +TH
Sbjct: 4  NSASRNSSFTGTVKRNEKQNWATSPSGALYHFGTSGFSVAVATGLTH 50

The following BLAST results are available for this feature:

BLAST of Csa7G390150 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAK2_CUCSA	1.6e-23	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G390150 PE=4 SV=1	[more]
A0A061DR63_THECC	2.1e-07	57.45	Mitochondrial substrate carrier family protein ucpB isoform 2 (Fragment) OS=Theo...	[more]
A0A061DS42_THECC	2.1e-07	57.45	Mitochondrial substrate carrier family protein ucpB isoform 1 OS=Theobroma cacao...	[more]
A0A072VN54_MEDTR	4.7e-07	55.32	Substrate carrier family protein OS=Medicago truncatula GN=MTR_1g088995 PE=3 SV=...	[more]
A0A072VNQ6_MEDTR	4.7e-07	55.32	Substrate carrier family protein OS=Medicago truncatula GN=MTR_1g088995 PE=3 SV=...	[more]

BLAST of Csa7G390150 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700189603\|gb\|KGN44836.1\|	2.3e-23	100.00	hypothetical protein Csa_7G390150 [Cucumis sativus]	[more]
gi\|778727781\|ref\|XP_011659318.1\|	1.2e-19	100.00	PREDICTED: mitochondrial substrate carrier family protein ucpB isoform X2 [Cucum...	[more]
gi\|778727778\|ref\|XP_004148885.2\|	1.2e-19	100.00	PREDICTED: mitochondrial substrate carrier family protein ucpB isoform X1 [Cucum...	[more]
gi\|659101101\|ref\|XP_008451426.1\|	4.5e-19	98.04	PREDICTED: mitochondrial substrate carrier family protein ucpB isoform X1 [Cucum...	[more]
gi\|590718182\|ref\|XP_007050759.1\|	3.0e-07	57.45	Mitochondrial substrate carrier family protein ucpB isoform 1 [Theobroma cacao]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa7G390150.1	Csa7G390150.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa7G390150	Cla014711	Watermelon (97103) v1	cuwmB553
Csa7G390150	ClCG09G006540	Watermelon (Charleston Gray)	cuwcgB517
Csa7G390150	Lsi02G023420	Bottle gourd (USVL1VR-Ls)	culsiB509
Csa7G390150	Cla97C09G169100	Watermelon (97103) v2	cuwmbB560
Csa7G390150	Bhi09G000808	Wax gourd	cuwgoB693
Csa7G390150	CSPI07G16560	Wild cucumber (PI 183967)	cpicuB354
Csa7G390150	CmaCh08G003820	Cucurbita maxima (Rimu)	cmacuB920
Csa7G390150	CmoCh08G003770	Cucurbita moschata (Rifu)	cmocuB907
Csa7G390150	Cp4.1LG17g06770	Cucurbita pepo (Zucchini)	cpecuB339
Csa7G390150	CsGy7G015040	Cucumber (Gy14) v2	cgybcuB323
Csa7G390150	Carg22171	Silver-seed gourd	carcuB0875

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa7G390150	Cucurbita maxima (Rimu)	cmacuB385
Csa7G390150	Cucurbita maxima (Rimu)	cmacuB388
Csa7G390150	Cucurbita maxima (Rimu)	cmacuB914
Csa7G390150	Cucurbita moschata (Rifu)	cmocuB375
Csa7G390150	Cucurbita moschata (Rifu)	cmocuB378
Csa7G390150	Cucurbita moschata (Rifu)	cmocuB900
Csa7G390150	Melon (DHL92) v3.5.1	cumeB522
Csa7G390150	Melon (DHL92) v3.5.1	cumeB535
Csa7G390150	Cucurbita pepo (Zucchini)	cpecuB158
Csa7G390150	Cucurbita pepo (Zucchini)	cpecuB161
Csa7G390150	Cucurbita pepo (Zucchini)	cpecuB344
Csa7G390150	Bottle gourd (USVL1VR-Ls)	culsiB503
Csa7G390150	Melon (DHL92) v3.6.1	cumedB514
Csa7G390150	Silver-seed gourd	carcuB0117
Csa7G390150	Cucumber (Gy14) v1	cgycuB085