Csa7G368190 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa7G368190
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr7 : 13046669 .. 13047151 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAAGTGTCCCTCCACTGACCACTTCTAGTGATGCCACGAGTGCAAAGGAAGTTCCTTCGAACGGTTGCTTGAAAGGTAATGCCCGAGGGTTTGGTGGCATGTCCACTCGAGGGCTTGGTGGCGTGTCTGCCCAACCCGTGGCATTGCTACCCATGGCACTGCCGACGTTCGTGTGTGCCTTGTTTGGCCTGCCATCACACACGCACACACTTGCCACCCACTCCATGTGGCAGTTGCTCTCATGCACACCACCCCTGCGCATGTCATGCACCCATGCTCCACAACAGGTGCGCGCAATTCCCACTTATAGCCCTTTGTCCACTGCGTTCAAGAAGGTTAGCGCTGACACATTGGTACTGCCAAATGTGCCACACCCCACCACCTACTTTCTAGGCGCTATGTCTTGTTCGGCCTCCCTAAAAGTTGAGGCATTCACGCACCCATCTTACTCAACCACCGTCATCAGGTGGGGGTCCTAG

mRNA sequence

ATGACAAGTGTCCCTCCACTGACCACTTCTAGTGATGCCACGAGTGCAAAGGAAGTTCCTTCGAACGGTTGCTTGAAAGGTAATGCCCGAGGGTTTGGTGGCATGTCCACTCGAGGGCTTGGTGGCGTGTCTGCCCAACCCGTGGCATTGCTACCCATGGCACTGCCGACGTTCGTGTGTGCCTTGTTTGGCCTGCCATCACACACGCACACACTTGCCACCCACTCCATGTGGCAGTTGCTCTCATGCACACCACCCCTGCGCATGTCATGCACCCATGCTCCACAACAGGTGCGCGCAATTCCCACTTATAGCCCTTTGTCCACTGCGTTCAAGAAGGTTAGCGCTGACACATTGGTACTGCCAAATGTGCCACACCCCACCACCTACTTTCTAGGCGCTATGTCTTGTTCGGCCTCCCTAAAAGTTGAGGCATTCACGCACCCATCTTACTCAACCACCGTCATCAGGTGGGGGTCCTAG

Coding sequence (CDS)

ATGACAAGTGTCCCTCCACTGACCACTTCTAGTGATGCCACGAGTGCAAAGGAAGTTCCTTCGAACGGTTGCTTGAAAGGTAATGCCCGAGGGTTTGGTGGCATGTCCACTCGAGGGCTTGGTGGCGTGTCTGCCCAACCCGTGGCATTGCTACCCATGGCACTGCCGACGTTCGTGTGTGCCTTGTTTGGCCTGCCATCACACACGCACACACTTGCCACCCACTCCATGTGGCAGTTGCTCTCATGCACACCACCCCTGCGCATGTCATGCACCCATGCTCCACAACAGGTGCGCGCAATTCCCACTTATAGCCCTTTGTCCACTGCGTTCAAGAAGGTTAGCGCTGACACATTGGTACTGCCAAATGTGCCACACCCCACCACCTACTTTCTAGGCGCTATGTCTTGTTCGGCCTCCCTAAAAGTTGAGGCATTCACGCACCCATCTTACTCAACCACCGTCATCAGGTGGGGGTCCTAG

Protein sequence

MTSVPPLTTSSDATSAKEVPSNGCLKGNARGFGGMSTRGLGGVSAQPVALLPMALPTFVCALFGLPSHTHTLATHSMWQLLSCTPPLRMSCTHAPQQVRAIPTYSPLSTAFKKVSADTLVLPNVPHPTTYFLGAMSCSASLKVEAFTHPSYSTTVIRWGS*

Homology

[Close]

BLAST of Csa7G368190 vs. TrEMBL
Match: A0A0A0K8H1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G368190 PE=4 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 1.5e-87
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 1


Query: 1   MTSVPPLTTSSDATSAKEVPSNGCLKGNARGFGGMSTRGLGGVSAQPVALLPMALPTFVC 60
           MTSVPPLTTSSDATSAKEVPSNGCLKGNARGFGGMSTRGLGGVSAQPVALLPMALPTFVC
Sbjct: 1   MTSVPPLTTSSDATSAKEVPSNGCLKGNARGFGGMSTRGLGGVSAQPVALLPMALPTFVC 60

Query: 61  ALFGLPSHTHTLATHSMWQLLSCTPPLRMSCTHAPQQVRAIPTYSPLSTAFKKVSADTLV 120
           ALFGLPSHTHTLATHSMWQLLSCTPPLRMSCTHAPQQVRAIPTYSPLSTAFKKVSADTLV
Sbjct: 61  ALFGLPSHTHTLATHSMWQLLSCTPPLRMSCTHAPQQVRAIPTYSPLSTAFKKVSADTLV 120

Query: 121 LPNVPHPTTYFLGAMSCSASLKVEAFTHPSYSTTVIRWGS 161
           LPNVPHPTTYFLGAMSCSASLKVEAFTHPSYSTTVIRWGS
Sbjct: 121 LPNVPHPTTYFLGAMSCSASLKVEAFTHPSYSTTVIRWGS 160

[Close]

BLAST of Csa7G368190 vs. NCBI nr
Match: gi|700189434|gb|KGN44667.1| (hypothetical protein Csa_7G368190 [Cucumis sativus])

HSP 1 Score: 330.1 bits (845), Expect = 2.2e-87
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 1


Query: 1   MTSVPPLTTSSDATSAKEVPSNGCLKGNARGFGGMSTRGLGGVSAQPVALLPMALPTFVC 60
           MTSVPPLTTSSDATSAKEVPSNGCLKGNARGFGGMSTRGLGGVSAQPVALLPMALPTFVC
Sbjct: 1   MTSVPPLTTSSDATSAKEVPSNGCLKGNARGFGGMSTRGLGGVSAQPVALLPMALPTFVC 60

Query: 61  ALFGLPSHTHTLATHSMWQLLSCTPPLRMSCTHAPQQVRAIPTYSPLSTAFKKVSADTLV 120
           ALFGLPSHTHTLATHSMWQLLSCTPPLRMSCTHAPQQVRAIPTYSPLSTAFKKVSADTLV
Sbjct: 61  ALFGLPSHTHTLATHSMWQLLSCTPPLRMSCTHAPQQVRAIPTYSPLSTAFKKVSADTLV 120

Query: 121 LPNVPHPTTYFLGAMSCSASLKVEAFTHPSYSTTVIRWGS 161
           LPNVPHPTTYFLGAMSCSASLKVEAFTHPSYSTTVIRWGS
Sbjct: 121 LPNVPHPTTYFLGAMSCSASLKVEAFTHPSYSTTVIRWGS 160

The following BLAST results are available for this feature:

BLAST of Csa7G368190 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8H1_CUCSA	1.5e-87	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G368190 PE=4 SV=1	[more]

BLAST of Csa7G368190 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700189434\|gb\|KGN44667.1\|	2.2e-87	100.00	hypothetical protein Csa_7G368190 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa7G368190.1	Csa7G368190.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa7G368190	CSPI07G14900	Wild cucumber (PI 183967)	cpicuB354

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa7G368190	Watermelon (97103) v2	cuwmbB571
Csa7G368190	Wax gourd	cuwgoB705
Csa7G368190	Cucumber (Gy14) v1	cgycuB545
Csa7G368190	Cucurbita maxima (Rimu)	cmacuB384
Csa7G368190	Cucurbita maxima (Rimu)	cmacuB914
Csa7G368190	Cucurbita moschata (Rifu)	cmocuB374
Csa7G368190	Cucurbita moschata (Rifu)	cmocuB900
Csa7G368190	Melon (DHL92) v3.5.1	cumeB523
Csa7G368190	Watermelon (Charleston Gray)	cuwcgB525
Csa7G368190	Watermelon (97103) v1	cuwmB567
Csa7G368190	Cucurbita pepo (Zucchini)	cpecuB157
Csa7G368190	Cucurbita pepo (Zucchini)	cpecuB337
Csa7G368190	Bottle gourd (USVL1VR-Ls)	culsiB503
Csa7G368190	Cucumber (Gy14) v2	cgybcuB323
Csa7G368190	Melon (DHL92) v3.6.1	cumedB502
Csa7G368190	Silver-seed gourd	carcuB0013
Csa7G368190	Silver-seed gourd	carcuB0095