Csa7G361530 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa7G361530
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr7 : 12878904 .. 12879230 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAATGAGTTTGGAAAGAGGAAGCGTTAGAGGAAGAGCTAATTCTATCTCTTCCAGGGGCAATCACCCATCTTCTTATTCTAACCTTGCACCCTCACCAATGAGTGCAGATCAATACGCCATGAATTTAGGGTTTACCACGGTAACCATATCCAGAGCAAGATCATCCGACATACAAATTGGATATAATTCCACAGAGTCATCAACTCCACCAAGGCCTTCGACTAATCTTATTCGTCCTTCTGGCGAAGTCATTCAAACGAGGCCTTCTGCCTCTTCTTTATCCAATAGGGATTCTTCTCCTCCTCCTACTACTTATTCGTAA

mRNA sequence

ATGTTAATGAGTTTGGAAAGAGGAAGCGTTAGAGGAAGAGCTAATTCTATCTCTTCCAGGGGCAATCACCCATCTTCTTATTCTAACCTTGCACCCTCACCAATGAGTGCAGATCAATACGCCATGAATTTAGGGTTTACCACGGTAACCATATCCAGAGCAAGATCATCCGACATACAAATTGGATATAATTCCACAGAGTCATCAACTCCACCAAGGCCTTCGACTAATCTTATTCGTCCTTCTGGCGAAGTCATTCAAACGAGGCCTTCTGCCTCTTCTTTATCCAATAGGGATTCTTCTCCTCCTCCTACTACTTATTCGTAA

Coding sequence (CDS)

ATGTTAATGAGTTTGGAAAGAGGAAGCGTTAGAGGAAGAGCTAATTCTATCTCTTCCAGGGGCAATCACCCATCTTCTTATTCTAACCTTGCACCCTCACCAATGAGTGCAGATCAATACGCCATGAATTTAGGGTTTACCACGGTAACCATATCCAGAGCAAGATCATCCGACATACAAATTGGATATAATTCCACAGAGTCATCAACTCCACCAAGGCCTTCGACTAATCTTATTCGTCCTTCTGGCGAAGTCATTCAAACGAGGCCTTCTGCCTCTTCTTTATCCAATAGGGATTCTTCTCCTCCTCCTACTACTTATTCGTAA

Protein sequence

MLMSLERGSVRGRANSISSRGNHPSSYSNLAPSPMSADQYAMNLGFTTVTISRARSSDIQIGYNSTESSTPPRPSTNLIRPSGEVIQTRPSASSLSNRDSSPPPTTYS*

Homology

[Close]

BLAST of Csa7G361530 vs. TrEMBL
Match: A0A0A0K595_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G361530 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 8.1e-53
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1


Query: 1   MLMSLERGSVRGRANSISSRGNHPSSYSNLAPSPMSADQYAMNLGFTTVTISRARSSDIQ 60
           MLMSLERGSVRGRANSISSRGNHPSSYSNLAPSPMSADQYAMNLGFTTVTISRARSSDIQ
Sbjct: 1   MLMSLERGSVRGRANSISSRGNHPSSYSNLAPSPMSADQYAMNLGFTTVTISRARSSDIQ 60

Query: 61  IGYNSTESSTPPRPSTNLIRPSGEVIQTRPSASSLSNRDSSPPPTTYS 109
           IGYNSTESSTPPRPSTNLIRPSGEVIQTRPSASSLSNRDSSPPPTTYS
Sbjct: 61  IGYNSTESSTPPRPSTNLIRPSGEVIQTRPSASSLSNRDSSPPPTTYS 108

[Close]

BLAST of Csa7G361530 vs. TrEMBL
Match: E5GCE6_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 3.3e-30
Identity = 75/106 (70.75%), Postives = 82/106 (77.36%), Query Frame = 1


Query: 3   MSLERGSVRGRANSISSRGNHPSSYSNLAPSPMSADQYAMNLGFTTVTISRARSSDIQIG 62
           MS E+GS RGR NS SS+G+ PSS SN  PSPMSA QY M+LGFT VT SR+R S I IG
Sbjct: 1   MSSEKGSARGRTNSTSSKGHRPSSSSNSEPSPMSAYQYTMDLGFTIVTRSRSRLSSIWIG 60

Query: 63  YNSTESSTPPRPSTNLIRPSGEVIQTRPSASSLSNRDSSPPPTTYS 109
            + TESSTPPRPS NLIRPSG VIQ RP AS  SNR+SS PPTTYS
Sbjct: 61  -SPTESSTPPRPSVNLIRPSGGVIQMRPPASPSSNRESSTPPTTYS 105

[Close]

BLAST of Csa7G361530 vs. NCBI nr
Match: gi|700189415|gb|KGN44648.1| (hypothetical protein Csa_7G361530 [Cucumis sativus])

HSP 1 Score: 214.2 bits (544), Expect = 1.2e-52
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1


Query: 1   MLMSLERGSVRGRANSISSRGNHPSSYSNLAPSPMSADQYAMNLGFTTVTISRARSSDIQ 60
           MLMSLERGSVRGRANSISSRGNHPSSYSNLAPSPMSADQYAMNLGFTTVTISRARSSDIQ
Sbjct: 1   MLMSLERGSVRGRANSISSRGNHPSSYSNLAPSPMSADQYAMNLGFTTVTISRARSSDIQ 60

Query: 61  IGYNSTESSTPPRPSTNLIRPSGEVIQTRPSASSLSNRDSSPPPTTYS 109
           IGYNSTESSTPPRPSTNLIRPSGEVIQTRPSASSLSNRDSSPPPTTYS
Sbjct: 61  IGYNSTESSTPPRPSTNLIRPSGEVIQTRPSASSLSNRDSSPPPTTYS 108

[Close]

BLAST of Csa7G361530 vs. NCBI nr
Match: gi|659098578|ref|XP_008450208.1| (PREDICTED: putative protein TPRXL [Cucumis melo])

HSP 1 Score: 143.7 bits (361), Expect = 1.9e-31
Identity = 76/106 (71.70%), Postives = 85/106 (80.19%), Query Frame = 1


Query: 3   MSLERGSVRGRANSISSRGNHPSSYSNLAPSPMSADQYAMNLGFTTVTISRARSSDIQIG 62
           MS E+GS RGR NS SS+GN PSS SN APSPMSADQYAM+L FTT+T SR+RSS I+IG
Sbjct: 1   MSSEKGSARGRTNSTSSKGNRPSSSSNFAPSPMSADQYAMDLEFTTITRSRSRSSGIRIG 60

Query: 63  YNSTESSTPPRPSTNLIRPSGEVIQTRPSASSLSNRDSSPPPTTYS 109
            + TESSTPPRPS NLIR S  V+Q RP AS  SNR+SS PPTTYS
Sbjct: 61  -SPTESSTPPRPSANLIRLSDGVVQMRPHASPSSNRESSTPPTTYS 105

[Close]

BLAST of Csa7G361530 vs. NCBI nr
Match: gi|307136323|gb|ADN34145.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 139.0 bits (349), Expect = 4.8e-30
Identity = 75/106 (70.75%), Postives = 82/106 (77.36%), Query Frame = 1


Query: 3   MSLERGSVRGRANSISSRGNHPSSYSNLAPSPMSADQYAMNLGFTTVTISRARSSDIQIG 62
           MS E+GS RGR NS SS+G+ PSS SN  PSPMSA QY M+LGFT VT SR+R S I IG
Sbjct: 1   MSSEKGSARGRTNSTSSKGHRPSSSSNSEPSPMSAYQYTMDLGFTIVTRSRSRLSSIWIG 60

Query: 63  YNSTESSTPPRPSTNLIRPSGEVIQTRPSASSLSNRDSSPPPTTYS 109
            + TESSTPPRPS NLIRPSG VIQ RP AS  SNR+SS PPTTYS
Sbjct: 61  -SPTESSTPPRPSVNLIRPSGGVIQMRPPASPSSNRESSTPPTTYS 105

The following BLAST results are available for this feature:

BLAST of Csa7G361530 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K595_CUCSA	8.1e-53	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G361530 PE=4 SV=1	[more]
E5GCE6_CUCME	3.3e-30	70.75	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]

BLAST of Csa7G361530 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700189415\|gb\|KGN44648.1\|	1.2e-52	100.00	hypothetical protein Csa_7G361530 [Cucumis sativus]	[more]
gi\|659098578\|ref\|XP_008450208.1\|	1.9e-31	71.70	PREDICTED: putative protein TPRXL [Cucumis melo]	[more]
gi\|307136323\|gb\|ADN34145.1\|	4.8e-30	70.75	hypothetical protein [Cucumis melo subsp. melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa7G361530.1	Csa7G361530.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa7G361530	CSPI07G14750	Wild cucumber (PI 183967)	cpicuB354

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa7G361530	Watermelon (97103) v2	cuwmbB571
Csa7G361530	Wax gourd	cuwgoB705
Csa7G361530	Cucumber (Gy14) v1	cgycuB545
Csa7G361530	Cucurbita maxima (Rimu)	cmacuB384
Csa7G361530	Cucurbita maxima (Rimu)	cmacuB914
Csa7G361530	Cucurbita moschata (Rifu)	cmocuB374
Csa7G361530	Cucurbita moschata (Rifu)	cmocuB900
Csa7G361530	Melon (DHL92) v3.5.1	cumeB523
Csa7G361530	Watermelon (Charleston Gray)	cuwcgB525
Csa7G361530	Watermelon (97103) v1	cuwmB567
Csa7G361530	Cucurbita pepo (Zucchini)	cpecuB157
Csa7G361530	Cucurbita pepo (Zucchini)	cpecuB337
Csa7G361530	Bottle gourd (USVL1VR-Ls)	culsiB503
Csa7G361530	Cucumber (Gy14) v2	cgybcuB323
Csa7G361530	Melon (DHL92) v3.6.1	cumedB502
Csa7G361530	Silver-seed gourd	carcuB0013
Csa7G361530	Silver-seed gourd	carcuB0095