Csa7G354020 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa7G354020
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Polygalacturonase; contains IPR011050 (Pectin lyase fold/virulence factor)
Location	Chr7 : 12707999 .. 12708853 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAAGAAATCTTAGCCTCATTCAAATCCTTCTCTTAGTATTTGCTTGGCAATGTTGTGCTGTCGTTTTCGATGACATCACCGGCACTCAAAATCGTCTGAAGGGGATCGTACCAACAACAAATGAGCAGTTTCTTCGTCCTGCAGAAGCACCCCGGCGTCTTGGCTTCAGTACTCTTCCCAACATTGGCGGCACGGTGAATGACATTAAGGCAAATGTTTATCTAAATCAGAATGGTGGGTCAGTTTTTGATGTTACAAAACATGGAGCTAAAGCTAATGGAAAAACTGATGATGCACAGGTGAGAAATATCAACACACACCAACTTCAAACCTTTTAATTTGAGTTAATTATCTGTAAATGGATGACTATAGGGAATTGTATATATTTTTTGCTATTAAATTCTACTGTTATATTATTCTAAACCGATGTCAATTTTTCTTCTATTCTATTTTGGTGGATATGGATGGTACAATTATTTCAACATTTTTTTGGCAAAAAGAGTTATAATTTTTTTTTATTTTTCATTTGGCAGGCATTCATGACAACATGGATTGCAGCTTGCCGAAACACAGTCGGTCCGGCCAAGTTCTTGATCCCACAAGGCACATTTTTGGTGGGTCCGGTGACTTTCGCCGGTCCTTGCAAAAGCTTTCCCATCACCCTTGAAAAAAAGGAACGGTAAAGGCCACCACCGATATTAGTGCATATTCTTCTCCAGAATGGTTCTCCATTGAAGATATTACTGGTTTCATCCTCACCGGCTCCGGCGTCTTTGACGGCCAAGGCCTCTCCGTTTGGCCCTACAACGACTGCAAGAAAAACAACTTATGCCAACTTCTTCCAATCGTAA

mRNA sequence

ATGACAAGAAATCTTAGCCTCATTCAAATCCTTCTCTTAGTATTTGCTTGGCAATGTTGTGCTGTCGTTTTCGATGACATCACCGGCACTCAAAATCGTCTGAAGGGGATCGTACCAACAACAAATGAGCAGTTTCTTCGTCCTGCAGAAGCACCCCGGCGTCTTGGCTTCAGTACTCTTCCCAACATTGGCGGCACGGTGAATGACATTAAGGCAAATGTTTATCTAAATCAGAATGGTGGGTCAGTTTTTGATGTTACAAAACATGGAGCTAAAGCTAATGGAAAAACTGATGATGCACAGGCATTCATGACAACATGGATTGCAGCTTGCCGAAACACAGTCGGTCCGGCCAAGTTCTTGATCCCACAAGGCACATTTTTGGTGGGTCCGAATGGTTCTCCATTGAAGATATTACTGGTTTCATCCTCACCGGCTCCGGCGTCTTTGACGGCCAAGGCCTCTCCGTTTGGCCCTACAACGACTGCAAGAAAAACAACTTATGCCAACTTCTTCCAATCGTAA

Coding sequence (CDS)

ATGACAAGAAATCTTAGCCTCATTCAAATCCTTCTCTTAGTATTTGCTTGGCAATGTTGTGCTGTCGTTTTCGATGACATCACCGGCACTCAAAATCGTCTGAAGGGGATCGTACCAACAACAAATGAGCAGTTTCTTCGTCCTGCAGAAGCACCCCGGCGTCTTGGCTTCAGTACTCTTCCCAACATTGGCGGCACGGTGAATGACATTAAGGCAAATGTTTATCTAAATCAGAATGGTGGGTCAGTTTTTGATGTTACAAAACATGGAGCTAAAGCTAATGGAAAAACTGATGATGCACAGGCATTCATGACAACATGGATTGCAGCTTGCCGAAACACAGTCGGTCCGGCCAAGTTCTTGATCCCACAAGGCACATTTTTGGTGGGTCCGAATGGTTCTCCATTGAAGATATTACTGGTTTCATCCTCACCGGCTCCGGCGTCTTTGACGGCCAAGGCCTCTCCGTTTGGCCCTACAACGACTGCAAGAAAAACAACTTATGCCAACTTCTTCCAATCGTAA

Protein sequence

MTRNLSLIQILLLVFAWQCCAVVFDDITGTQNRLKGIVPTTNEQFLRPAEAPRRLGFSTLPNIGGTVNDIKANVYLNQNGGSVFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKFLIPQGTFLVGPNGSPLKILLVSSSPAPASLTAKASPFGPTTTARKTTYANFFQS*

Homology

[Close]

BLAST of Csa7G354020 vs. Swiss-Prot
Match: PGLR1_ARATH (Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana GN=PGA3 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.4e-07
Identity = 26/55 (47.27%), Postives = 34/55 (61.82%), Query Frame = 1


Query: 77  NQNGGSVFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKFLIPQGTFLVGP 132
           N    +V+D+TK GA  +G T+  +AF+ TWI  C + V PA  L+P+GTFL GP
Sbjct: 45  NSGNPTVYDITKFGAVGDGSTNTFKAFLNTWIQVCDSPV-PATLLVPKGTFLAGP 98

[Close]

BLAST of Csa7G354020 vs. Swiss-Prot
Match: PGLR3_MAIZE (Exopolygalacturonase OS=Zea mays GN=PG2C PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.4e-07
Identity = 31/64 (48.44%), Postives = 34/64 (53.12%), Query Frame = 1


Query: 68  NDIKANVYLNQNGGSVFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKFLIPQGTF 127
           ND KA+       G  FD+TK GA  NGKTD  +A    W +AC  T G    LIP+G F
Sbjct: 30  NDAKAS-----GPGGSFDITKLGASGNGKTDSTKAVQEAWASACGGT-GKQTILIPKGDF 87

Query: 128 LVGP 132
           LVGP
Sbjct: 90  LVGP 87

[Close]

BLAST of Csa7G354020 vs. Swiss-Prot
Match: PGLR1_MAIZE (Exopolygalacturonase OS=Zea mays GN=PG1 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.5e-06
Identity = 26/50 (52.00%), Postives = 28/50 (56.00%), Query Frame = 1


Query: 81  GSVFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKFLIPQGTFLVG 131
           G  FD+TK GA  NGKTD  +A    W +AC  T G    LIP+G FLVG
Sbjct: 38  GGSFDITKLGASGNGKTDSTKAVQEAWASACGGT-GKQTILIPKGDFLVG 86

[Close]

BLAST of Csa7G354020 vs. Swiss-Prot
Match: PGLR2_MAIZE (Exopolygalacturonase OS=Zea mays GN=PG9 PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.5e-06
Identity = 26/50 (52.00%), Postives = 28/50 (56.00%), Query Frame = 1


Query: 81  GSVFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKFLIPQGTFLVG 131
           G  FD+TK GA  NGKTD  +A    W +AC  T G    LIP+G FLVG
Sbjct: 38  GGSFDITKLGASGNGKTDSTKAVQEAWASACGGT-GKQTILIPKGDFLVG 86

[Close]

BLAST of Csa7G354020 vs. TrEMBL
Match: A0A0A0K8F1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G354020 PE=4 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 2.4e-94
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 1


Query: 1   MTRNLSLIQILLLVFAWQCCAVVFDDITGTQNRLKGIVPTTNEQFLRPAEAPRRLGFSTL 60
           MTRNLSLIQILLLVFAWQCCAVVFDDITGTQNRLKGIVPTTNEQFLRPAEAPRRLGFSTL
Sbjct: 1   MTRNLSLIQILLLVFAWQCCAVVFDDITGTQNRLKGIVPTTNEQFLRPAEAPRRLGFSTL 60

Query: 61  PNIGGTVNDIKANVYLNQNGGSVFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKF 120
           PNIGGTVNDIKANVYLNQNGGSVFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKF
Sbjct: 61  PNIGGTVNDIKANVYLNQNGGSVFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKF 120

Query: 121 LIPQGTFLVGPNGSPLKILLVSSSPAPASLTAKASPFGPTTTARKTTYANFFQS 175
           LIPQGTFLVGPNGSPLKILLVSSSPAPASLTAKASPFGPTTTARKTTYANFFQS
Sbjct: 121 LIPQGTFLVGPNGSPLKILLVSSSPAPASLTAKASPFGPTTTARKTTYANFFQS 174

[Close]

BLAST of Csa7G354020 vs. TrEMBL
Match: A0A0A0K588_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G353000 PE=3 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 5.7e-64
Identity = 123/131 (93.89%), Postives = 126/131 (96.18%), Query Frame = 1


Query: 1   MTRNLSLIQILLLVFAWQCCAVVFDDITGTQNRLKGIVPTTNEQFLRPAEAPRRLGFSTL 60
           MTRNLSLIQILLLVFAWQCCAVVF DITGTQNRLKGIVPTTNEQFLRP EAPRRLGF+TL
Sbjct: 1   MTRNLSLIQILLLVFAWQCCAVVFYDITGTQNRLKGIVPTTNEQFLRPTEAPRRLGFNTL 60

Query: 61  PNIGGTVNDIKANVYLNQNGGSVFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKF 120
            NIGGTVNDIKANV LN+NG S+FDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKF
Sbjct: 61  SNIGGTVNDIKANVDLNENGVSIFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKF 120

Query: 121 LIPQGTFLVGP 132
           LIPQGTFLVGP
Sbjct: 121 LIPQGTFLVGP 131

[Close]

BLAST of Csa7G354020 vs. TrEMBL
Match: A0A0A0KAZ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G398720 PE=3 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 5.5e-59
Identity = 113/131 (86.26%), Postives = 120/131 (91.60%), Query Frame = 1


Query: 1   MTRNLSLIQILLLVFAWQCCAVVFDDITGTQNRLKGIVPTTNEQFLRPAEAPRRLGFSTL 60
           MTRN SLIQILLLVFA QCCAV+FDD+TGTQN LKGIVP  N+QFLRPAE+PR LGFSTL
Sbjct: 1   MTRNFSLIQILLLVFACQCCAVIFDDVTGTQNLLKGIVPKANKQFLRPAESPRHLGFSTL 60

Query: 61  PNIGGTVNDIKANVYLNQNGGSVFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKF 120
           PNIGG VNDIKANV LN+NGGSVFDVTKHGAK +G+TDDA AFMTTWIAACRNTVGP KF
Sbjct: 61  PNIGGRVNDIKANVDLNENGGSVFDVTKHGAKGDGETDDAHAFMTTWIAACRNTVGPTKF 120

Query: 121 LIPQGTFLVGP 132
           LIPQGTFLVGP
Sbjct: 121 LIPQGTFLVGP 131

[Close]

BLAST of Csa7G354020 vs. TrEMBL
Match: A0A0A0K5I2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G398220 PE=3 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 1.4e-51
Identity = 108/135 (80.00%), Postives = 113/135 (83.70%), Query Frame = 1


Query: 1   MTRNLSLIQILLLVFAWQCCA---VVFDDITGTQNRLKGIVPTTNEQFLRPAEAPRRLGF 60
           MTRN SLIQILLLVFAW+CCA    +F D   TQ  L GIVP  NEQFLRPAEAP  LGF
Sbjct: 1   MTRNFSLIQILLLVFAWECCARAAAIFIDTINTQILLNGIVPKVNEQFLRPAEAPWHLGF 60

Query: 61  STLPNIGG-TVNDIKANVYLNQNGGSVFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVG 120
           STLPNIGG TVNDIK NV LN+NGG VFDVTKHGAKA+G+TDDAQAFMTTWIAACRNTVG
Sbjct: 61  STLPNIGGGTVNDIKVNVDLNENGGLVFDVTKHGAKADGETDDAQAFMTTWIAACRNTVG 120

Query: 121 PAKFLIPQGTFLVGP 132
           PAKFLIPQ  FLVGP
Sbjct: 121 PAKFLIPQDIFLVGP 135

[Close]

BLAST of Csa7G354020 vs. TrEMBL
Match: A0A0A0KMA6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G222970 PE=3 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.3e-44
Identity = 90/99 (90.91%), Postives = 95/99 (95.96%), Query Frame = 1


Query: 33  RLKGIVPTTNEQFLRPAEAPRRLGFSTLPNIGGTVNDIKANVYLNQNGGSVFDVTKHGAK 92
           RL GIVPTTN+QFLRPAEAPR LGF+TLP+IGGTVNDI ANV LN+NGGSVFDVTKHGAK
Sbjct: 5   RLYGIVPTTNKQFLRPAEAPRHLGFNTLPDIGGTVNDINANVDLNENGGSVFDVTKHGAK 64

Query: 93  ANGKTDDAQAFMTTWIAACRNTVGPAKFLIPQGTFLVGP 132
           A+GKTDDAQAFMTTWIAACRNTVGPAKFLIPQGTFLVGP
Sbjct: 65  ADGKTDDAQAFMTTWIAACRNTVGPAKFLIPQGTFLVGP 103

[Close]

BLAST of Csa7G354020 vs. TAIR10
Match: AT2G15460.1 (AT2G15460.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 63.2 bits (152), Expect = 1.9e-10
Identity = 30/73 (41.10%), Postives = 44/73 (60.27%), Query Frame = 1


Query: 83  VFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKFLIPQGTF------LVGPNGSPL 142
           VF+V +HGAK +GKTD+A AF + W  AC+   G +K  +P+GTF       VGP  +P+
Sbjct: 30  VFNVQRHGAKPDGKTDNANAFTSIWSRACKRISGSSKIYVPKGTFYLGGVEFVGPCKNPI 89

Query: 143 KILLVSSSPAPAS 150
           + ++  +  APA+
Sbjct: 90  EFIIDGTLLAPAN 102

[Close]

BLAST of Csa7G354020 vs. TAIR10
Match: AT2G15450.1 (AT2G15450.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 63.2 bits (152), Expect = 1.9e-10
Identity = 30/73 (41.10%), Postives = 44/73 (60.27%), Query Frame = 1


Query: 83  VFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKFLIPQGTF------LVGPNGSPL 142
           VF+V +HGAK +GKTD+A AF + W  AC+   G +K  +P+GTF       VGP  +P+
Sbjct: 30  VFNVQRHGAKPDGKTDNANAFTSIWSRACKRISGSSKIYVPKGTFYLGGVEFVGPCKNPI 89

Query: 143 KILLVSSSPAPAS 150
           + ++  +  APA+
Sbjct: 90  EFIIDGTLLAPAN 102

[Close]

BLAST of Csa7G354020 vs. TAIR10
Match: AT2G26620.1 (AT2G26620.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-09
Identity = 28/73 (38.36%), Postives = 43/73 (58.90%), Query Frame = 1


Query: 83  VFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKFLIPQGTF------LVGPNGSPL 142
           VF+V +HG+K +GKTD+  AF + W  AC+   G +K  +P+GTF       VGP  +P+
Sbjct: 30  VFNVQRHGSKPDGKTDNTNAFTSIWSRACKRISGSSKIYVPKGTFYLGGVEFVGPCKNPI 89

Query: 143 KILLVSSSPAPAS 150
           + ++  +  APA+
Sbjct: 90  EFIIDGTLLAPAN 102

[Close]

BLAST of Csa7G354020 vs. TAIR10
Match: AT4G13760.1 (AT4G13760.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-09
Identity = 28/73 (38.36%), Postives = 43/73 (58.90%), Query Frame = 1


Query: 83  VFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKFLIPQGTF------LVGPNGSPL 142
           +F+V +HG+K++GKTD+   F + W  ACR   G +K  +P+GTF       VGP  +P+
Sbjct: 30  MFNVQRHGSKSDGKTDNTNVFTSVWNRACRRKSGSSKIYVPKGTFYLGGVEFVGPCKNPI 89

Query: 143 KILLVSSSPAPAS 150
           + L+  +  APA+
Sbjct: 90  EFLIDGTLLAPAN 102

[Close]

BLAST of Csa7G354020 vs. TAIR10
Match: AT2G15470.1 (AT2G15470.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 59.3 bits (142), Expect = 2.7e-09
Identity = 29/73 (39.73%), Postives = 43/73 (58.90%), Query Frame = 1


Query: 83  VFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKFLIPQGTF------LVGPNGSPL 142
           VF+V +HGAK +GKTD+A AF + W  AC+   G +K  +P+GTF       VG   +P+
Sbjct: 30  VFNVQRHGAKPDGKTDNANAFTSIWSRACKRISGSSKIYVPKGTFYLGGVEFVGLCKNPI 89

Query: 143 KILLVSSSPAPAS 150
           + ++  +  APA+
Sbjct: 90  EFIIDGTLLAPAN 102

[Close]

BLAST of Csa7G354020 vs. NCBI nr
Match: gi|700189409|gb|KGN44642.1| (hypothetical protein Csa_7G354020 [Cucumis sativus])

HSP 1 Score: 352.8 bits (904), Expect = 3.4e-94
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 1


Query: 1   MTRNLSLIQILLLVFAWQCCAVVFDDITGTQNRLKGIVPTTNEQFLRPAEAPRRLGFSTL 60
           MTRNLSLIQILLLVFAWQCCAVVFDDITGTQNRLKGIVPTTNEQFLRPAEAPRRLGFSTL
Sbjct: 1   MTRNLSLIQILLLVFAWQCCAVVFDDITGTQNRLKGIVPTTNEQFLRPAEAPRRLGFSTL 60

Query: 61  PNIGGTVNDIKANVYLNQNGGSVFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKF 120
           PNIGGTVNDIKANVYLNQNGGSVFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKF
Sbjct: 61  PNIGGTVNDIKANVYLNQNGGSVFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKF 120

Query: 121 LIPQGTFLVGPNGSPLKILLVSSSPAPASLTAKASPFGPTTTARKTTYANFFQS 175
           LIPQGTFLVGPNGSPLKILLVSSSPAPASLTAKASPFGPTTTARKTTYANFFQS
Sbjct: 121 LIPQGTFLVGPNGSPLKILLVSSSPAPASLTAKASPFGPTTTARKTTYANFFQS 174

[Close]

BLAST of Csa7G354020 vs. NCBI nr
Match: gi|700189405|gb|KGN44638.1| (hypothetical protein Csa_7G353000 [Cucumis sativus])

HSP 1 Score: 251.9 bits (642), Expect = 8.1e-64
Identity = 123/131 (93.89%), Postives = 126/131 (96.18%), Query Frame = 1


Query: 1   MTRNLSLIQILLLVFAWQCCAVVFDDITGTQNRLKGIVPTTNEQFLRPAEAPRRLGFSTL 60
           MTRNLSLIQILLLVFAWQCCAVVF DITGTQNRLKGIVPTTNEQFLRP EAPRRLGF+TL
Sbjct: 1   MTRNLSLIQILLLVFAWQCCAVVFYDITGTQNRLKGIVPTTNEQFLRPTEAPRRLGFNTL 60

Query: 61  PNIGGTVNDIKANVYLNQNGGSVFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKF 120
            NIGGTVNDIKANV LN+NG S+FDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKF
Sbjct: 61  SNIGGTVNDIKANVDLNENGVSIFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKF 120

Query: 121 LIPQGTFLVGP 132
           LIPQGTFLVGP
Sbjct: 121 LIPQGTFLVGP 131

[Close]

BLAST of Csa7G354020 vs. NCBI nr
Match: gi|778708423|ref|XP_011656188.1| (PREDICTED: exopolygalacturonase-like [Cucumis sativus])

HSP 1 Score: 242.7 bits (618), Expect = 4.9e-61
Identity = 117/131 (89.31%), Postives = 125/131 (95.42%), Query Frame = 1


Query: 1   MTRNLSLIQILLLVFAWQCCAVVFDDITGTQNRLKGIVPTTNEQFLRPAEAPRRLGFSTL 60
           MTRNLSLIQI+LL FAWQ CAV+F+DITGTQN LKGIVPTTN+QFLRPAEAPR LGF+TL
Sbjct: 1   MTRNLSLIQIILLEFAWQSCAVIFNDITGTQNLLKGIVPTTNKQFLRPAEAPRHLGFNTL 60

Query: 61  PNIGGTVNDIKANVYLNQNGGSVFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKF 120
           P+IGGTVNDI ANV LN+NGGSVFDVTKHGAKA+GKTDDAQAFMTTWIAACRNTVGPAKF
Sbjct: 61  PDIGGTVNDINANVDLNENGGSVFDVTKHGAKADGKTDDAQAFMTTWIAACRNTVGPAKF 120

Query: 121 LIPQGTFLVGP 132
           LIPQGTFLVGP
Sbjct: 121 LIPQGTFLVGP 131

[Close]

BLAST of Csa7G354020 vs. NCBI nr
Match: gi|700189728|gb|KGN44961.1| (hypothetical protein Csa_7G398720 [Cucumis sativus])

HSP 1 Score: 235.3 bits (599), Expect = 7.9e-59
Identity = 113/131 (86.26%), Postives = 120/131 (91.60%), Query Frame = 1


Query: 1   MTRNLSLIQILLLVFAWQCCAVVFDDITGTQNRLKGIVPTTNEQFLRPAEAPRRLGFSTL 60
           MTRN SLIQILLLVFA QCCAV+FDD+TGTQN LKGIVP  N+QFLRPAE+PR LGFSTL
Sbjct: 1   MTRNFSLIQILLLVFACQCCAVIFDDVTGTQNLLKGIVPKANKQFLRPAESPRHLGFSTL 60

Query: 61  PNIGGTVNDIKANVYLNQNGGSVFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKF 120
           PNIGG VNDIKANV LN+NGGSVFDVTKHGAK +G+TDDA AFMTTWIAACRNTVGP KF
Sbjct: 61  PNIGGRVNDIKANVDLNENGGSVFDVTKHGAKGDGETDDAHAFMTTWIAACRNTVGPTKF 120

Query: 121 LIPQGTFLVGP 132
           LIPQGTFLVGP
Sbjct: 121 LIPQGTFLVGP 131

[Close]

BLAST of Csa7G354020 vs. NCBI nr
Match: gi|700189727|gb|KGN44960.1| (hypothetical protein Csa_7G398220 [Cucumis sativus])

HSP 1 Score: 210.7 bits (535), Expect = 2.1e-51
Identity = 108/135 (80.00%), Postives = 113/135 (83.70%), Query Frame = 1


Query: 1   MTRNLSLIQILLLVFAWQCCA---VVFDDITGTQNRLKGIVPTTNEQFLRPAEAPRRLGF 60
           MTRN SLIQILLLVFAW+CCA    +F D   TQ  L GIVP  NEQFLRPAEAP  LGF
Sbjct: 1   MTRNFSLIQILLLVFAWECCARAAAIFIDTINTQILLNGIVPKVNEQFLRPAEAPWHLGF 60

Query: 61  STLPNIGG-TVNDIKANVYLNQNGGSVFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVG 120
           STLPNIGG TVNDIK NV LN+NGG VFDVTKHGAKA+G+TDDAQAFMTTWIAACRNTVG
Sbjct: 61  STLPNIGGGTVNDIKVNVDLNENGGLVFDVTKHGAKADGETDDAQAFMTTWIAACRNTVG 120

Query: 121 PAKFLIPQGTFLVGP 132
           PAKFLIPQ  FLVGP
Sbjct: 121 PAKFLIPQDIFLVGP 135

The following BLAST results are available for this feature:

BLAST of Csa7G354020 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PGLR1_ARATH	1.4e-07	47.27	Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana GN=PGA3 PE=2 SV=1	[more]
PGLR3_MAIZE	2.4e-07	48.44	Exopolygalacturonase OS=Zea mays GN=PG2C PE=2 SV=1	[more]
PGLR1_MAIZE	3.5e-06	52.00	Exopolygalacturonase OS=Zea mays GN=PG1 PE=1 SV=1	[more]
PGLR2_MAIZE	3.5e-06	52.00	Exopolygalacturonase OS=Zea mays GN=PG9 PE=2 SV=1	[more]

BLAST of Csa7G354020 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8F1_CUCSA	2.4e-94	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G354020 PE=4 SV=1	[more]
A0A0A0K588_CUCSA	5.7e-64	93.89	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G353000 PE=3 SV=1	[more]
A0A0A0KAZ2_CUCSA	5.5e-59	86.26	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G398720 PE=3 SV=1	[more]
A0A0A0K5I2_CUCSA	1.4e-51	80.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G398220 PE=3 SV=1	[more]
A0A0A0KMA6_CUCSA	1.3e-44	90.91	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G222970 PE=3 SV=1	[more]

BLAST of Csa7G354020 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G15460.1	1.9e-10	41.10	Pectin lyase-like superfamily protein	[more]
AT2G15450.1	1.9e-10	41.10	Pectin lyase-like superfamily protein	[more]
AT2G26620.1	1.2e-09	38.36	Pectin lyase-like superfamily protein	[more]
AT4G13760.1	1.2e-09	38.36	Pectin lyase-like superfamily protein	[more]
AT2G15470.1	2.7e-09	39.73	Pectin lyase-like superfamily protein	[more]

BLAST of Csa7G354020 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700189409\|gb\|KGN44642.1\|	3.4e-94	100.00	hypothetical protein Csa_7G354020 [Cucumis sativus]	[more]
gi\|700189405\|gb\|KGN44638.1\|	8.1e-64	93.89	hypothetical protein Csa_7G353000 [Cucumis sativus]	[more]
gi\|778708423\|ref\|XP_011656188.1\|	4.9e-61	89.31	PREDICTED: exopolygalacturonase-like [Cucumis sativus]	[more]
gi\|700189728\|gb\|KGN44961.1\|	7.9e-59	86.26	hypothetical protein Csa_7G398720 [Cucumis sativus]	[more]
gi\|700189727\|gb\|KGN44960.1\|	2.1e-51	80.00	hypothetical protein Csa_7G398220 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR011050	Pectin_lyase_fold/virulence
IPR012334	Pectin_lyas_fold

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071555	cell wall organization
biological_process	GO:0005982	starch metabolic process
biological_process	GO:0005985	sucrose metabolic process
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0004650	polygalacturonase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa7G354020.1	Csa7G354020.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011050	Pectin lyase fold/virulence factor	unknown	SSF51126	Pectin lyase-like	coord: 82..131 score: 1.18
IPR012334	Pectin lyase fold	GENE3D	G3DSA:2.160.20.10		coord: 81..130 score: 5.1
None	No IPR available	PANTHER	PTHR31375	FAMILY NOT NAMED	coord: 19..130 score: 1.0
None	No IPR available	PANTHER	PTHR31375:SF16	SUBFAMILY NOT NAMED	coord: 19..130 score: 1.0

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa7G354020	Melon (DHL92) v3.6.1	cumedB502
Csa7G354020	Silver-seed gourd	carcuB0013
Csa7G354020	Silver-seed gourd	carcuB0095
Csa7G354020	Watermelon (97103) v2	cuwmbB550
Csa7G354020	Watermelon (97103) v2	cuwmbB571
Csa7G354020	Wax gourd	cuwgoB705
Csa7G354020	Cucumber (Chinese Long) v2	cucuB132
Csa7G354020	Cucumber (Gy14) v1	cgycuB076
Csa7G354020	Cucurbita maxima (Rimu)	cmacuB384
Csa7G354020	Cucurbita maxima (Rimu)	cmacuB531
Csa7G354020	Cucurbita maxima (Rimu)	cmacuB914
Csa7G354020	Cucurbita moschata (Rifu)	cmocuB374
Csa7G354020	Cucurbita moschata (Rifu)	cmocuB522
Csa7G354020	Cucurbita moschata (Rifu)	cmocuB900
Csa7G354020	Melon (DHL92) v3.5.1	cumeB523
Csa7G354020	Watermelon (Charleston Gray)	cuwcgB525
Csa7G354020	Watermelon (Charleston Gray)	cuwcgB565
Csa7G354020	Watermelon (97103) v1	cuwmB567
Csa7G354020	Watermelon (97103) v1	cuwmB587
Csa7G354020	Cucurbita pepo (Zucchini)	cpecuB157
Csa7G354020	Cucurbita pepo (Zucchini)	cpecuB337
Csa7G354020	Cucurbita pepo (Zucchini)	cpecuB769
Csa7G354020	Bottle gourd (USVL1VR-Ls)	culsiB503
Csa7G354020	Bottle gourd (USVL1VR-Ls)	culsiB526
Csa7G354020	Cucumber (Gy14) v2	cgybcuB152
Csa7G354020	Cucumber (Gy14) v2	cgybcuB323