Csa7G353520 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa7G353520
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Polygalacturonase; contains IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)
Location	Chr7 : 12706963 .. 12707211 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGCATGCAGGAATCAAATTGGAAGGTTAGCAACGTACAGTTCAAGAACATTCGGGGAACATCGACAACGAATGTGGCAGTGTTGTTGGAGTGCAGCAAATTGTTTCCATGCGAGGGGGTAGAGTTGAGGGACATTAACTTGAGTTATGGAGGCACCAACTTGAGGAATACAACCATTGTTTCTTCATGTTCGAATGCAAAGATTGCTACTTTTGGGGTTCAAAACCCACCACCTTGTGTTGTATAA

mRNA sequence

ATGTGCATGCAGGAATCAAATTGGAAGGTTAGCAACGTACAGTTCAAGAACATTCGGGGAACATCGACAACGAATGTGGCAGTGTTGTTGGAGTGCAGCAAATTGTTTCCATGCGAGGGGGTAGAGTTGAGGGACATTAACTTGAGTTATGGAGGCACCAACTTGAGGAATACAACCATTGTTTCTTCATGTTCGAATGCAAAGATTGCTACTTTTGGGGTTCAAAACCCACCACCTTGTGTTGTATAA

Coding sequence (CDS)

ATGTGCATGCAGGAATCAAATTGGAAGGTTAGCAACGTACAGTTCAAGAACATTCGGGGAACATCGACAACGAATGTGGCAGTGTTGTTGGAGTGCAGCAAATTGTTTCCATGCGAGGGGGTAGAGTTGAGGGACATTAACTTGAGTTATGGAGGCACCAACTTGAGGAATACAACCATTGTTTCTTCATGTTCGAATGCAAAGATTGCTACTTTTGGGGTTCAAAACCCACCACCTTGTGTTGTATAA

Protein sequence

MCMQESNWKVSNVQFKNIRGTSTTNVAVLLECSKLFPCEGVELRDINLSYGGTNLRNTTIVSSCSNAKIATFGVQNPPPCVV*

Homology

[Close]

BLAST of Csa7G353520 vs. Swiss-Prot
Match: PGLR_OENOR (Exopolygalacturonase (Fragment) OS=Oenothera organensis PE=2 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.3e-11
Identity = 38/75 (50.67%), Postives = 43/75 (57.33%), Query Frame = 1


Query: 6   SNWKVSNVQFKNIRGTSTTNVAVLLECSKLFPCEGVELRDINLSYGGTNLRNTTIVSSCS 65
           S+ K+S + FKNI+GTSTT  AV L CSK FPC GVEL DI+L+Y G   +     S C 
Sbjct: 283 SSVKLSKISFKNIKGTSTTKEAVKLVCSKSFPCNGVELADIDLTYSG---KGGPATSVCE 342

Query: 66  NAKIATFGVQNPPPC 81
           N K    G Q P  C
Sbjct: 343 NIKPTIKGKQIPAIC 354

[Close]

BLAST of Csa7G353520 vs. Swiss-Prot
Match: PGLR_TOBAC (Polygalacturonase OS=Nicotiana tabacum GN=PG1 PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.9e-10
Identity = 36/75 (48.00%), Postives = 44/75 (58.67%), Query Frame = 1


Query: 6   SNWKVSNVQFKNIRGTSTTNVAVLLECSKLFPCEGVELRDINLSYGGTNLRNTTIVSSCS 65
           S  K+S V F+NI+GTS T  AV L  SK  PCEG+E+ DI+++Y G   +     SSC 
Sbjct: 317 SQVKISKVSFQNIKGTSRTQDAVSLLRSKGVPCEGIEVGDIDITYSG---KEGPAKSSCE 376

Query: 66  NAKIATFGVQNPPPC 81
           N K +  G QNPP C
Sbjct: 377 NIKPSLKGKQNPPVC 388

[Close]

BLAST of Csa7G353520 vs. Swiss-Prot
Match: PGLR_GOSBA (Polygalacturonase OS=Gossypium barbadense GN=G9 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 4.2e-10
Identity = 34/77 (44.16%), Postives = 40/77 (51.95%), Query Frame = 1


Query: 4   QESNWKVSNVQFKNIRGTSTTNVAVLLECSKLFPCEGVELRDINLSYGGTNLRNTTIVSS 63
           +ES  K+SN+ FKNIRGTS    A+   CS   PC+ VEL DI++ + G         S 
Sbjct: 323 EESKVKLSNISFKNIRGTSALPEAIKFICSGSSPCQNVELADIDIQHNGAE----PATSQ 382

Query: 64  CSNAKIATFGVQNPPPC 81
           C N K  T G  NP PC
Sbjct: 383 CLNVKPITIGKLNPIPC 395

[Close]

BLAST of Csa7G353520 vs. Swiss-Prot
Match: PGLR_GOSHI (Polygalacturonase OS=Gossypium hirsutum GN=G9 PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 7.1e-10
Identity = 34/77 (44.16%), Postives = 40/77 (51.95%), Query Frame = 1


Query: 4   QESNWKVSNVQFKNIRGTSTTNVAVLLECSKLFPCEGVELRDINLSYGGTNLRNTTIVSS 63
           +ES  K+SN+ FKNIRGTS    A+   CS   PC+ VEL DI++ + G         S 
Sbjct: 323 EESKVKLSNISFKNIRGTSALPEAIKFICSGSSPCQNVELADIDIKHNGAE----PATSQ 382

Query: 64  CSNAKIATFGVQNPPPC 81
           C N K  T G  NP PC
Sbjct: 383 CLNVKPITSGKLNPIPC 395

[Close]

BLAST of Csa7G353520 vs. Swiss-Prot
Match: PGLR2_PLAAC (Exopolygalacturonase (Fragment) OS=Platanus acerifolia GN=plaa2 PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 4.6e-09
Identity = 34/72 (47.22%), Postives = 42/72 (58.33%), Query Frame = 1


Query: 6   SNWKVSNVQFKNIRGTSTTNVAVLLECSKLFPCEGVELRDINLSYGGTNLRNTTIVSSCS 65
           S  K+SN+ F NIRGTST  VAV++ CS   PC  +++ +INLSY G     T   S+CS
Sbjct: 304 SRIKLSNINFNNIRGTSTGKVAVVIACSHGMPCSNMKIGEINLSYRGAGGPAT---STCS 363

Query: 66  NAKIATFGVQNP 78
           N K    G Q P
Sbjct: 364 NVKPTFSGKQVP 372

[Close]

BLAST of Csa7G353520 vs. TrEMBL
Match: A0A0A0KA01_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G353520 PE=3 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 3.5e-40
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1


Query: 1  MCMQESNWKVSNVQFKNIRGTSTTNVAVLLECSKLFPCEGVELRDINLSYGGTNLRNTTI 60
          MCMQESNWKVSNVQFKNIRGTSTTNVAVLLECSKLFPCEGVELRDINLSYGGTNLRNTTI
Sbjct: 1  MCMQESNWKVSNVQFKNIRGTSTTNVAVLLECSKLFPCEGVELRDINLSYGGTNLRNTTI 60

Query: 61 VSSCSNAKIATFGVQNPPPCVV 83
          VSSCSNAKIATFGVQNPPPCVV
Sbjct: 61 VSSCSNAKIATFGVQNPPPCVV 82

[Close]

BLAST of Csa7G353520 vs. TrEMBL
Match: A0A0A0KMA6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G222970 PE=3 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 8.1e-37
Identity = 77/79 (97.47%), Postives = 78/79 (98.73%), Query Frame = 1


Query: 4   QESNWKVSNVQFKNIRGTSTTNVAVLLECSKLFPCEGVELRDINLSYGGTNLRNTTIVSS 63
           +ESNWKVSNVQFKNIRGTSTTNVAVLLECSKLFPCEGVELRDINLSYGGTNLRNTTIVSS
Sbjct: 344 KESNWKVSNVQFKNIRGTSTTNVAVLLECSKLFPCEGVELRDINLSYGGTNLRNTTIVSS 403

Query: 64  CSNAKIATFGVQNPPPCVV 83
           CSNAKIATFGVQ PPPCVV
Sbjct: 404 CSNAKIATFGVQKPPPCVV 422

[Close]

BLAST of Csa7G353520 vs. TrEMBL
Match: A0A0A0K7V3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G398210 PE=3 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 4.5e-35
Identity = 72/78 (92.31%), Postives = 77/78 (98.72%), Query Frame = 1


Query: 3  MQESNWKVSNVQFKNIRGTSTTNVAVLLECSKLFPCEGVELRDINLSYGGTNLRNTTIVS 62
          MQESNWKVS++ FKNIRGTSTTNVAVLLECSKLFPCEGVELRDINL+YGGT+LRNTT+VS
Sbjct: 1  MQESNWKVSDILFKNIRGTSTTNVAVLLECSKLFPCEGVELRDINLTYGGTDLRNTTVVS 60

Query: 63 SCSNAKIATFGVQNPPPC 81
          SCSNAKIATFGVQNPPPC
Sbjct: 61 SCSNAKIATFGVQNPPPC 78

[Close]

BLAST of Csa7G353520 vs. TrEMBL
Match: A0A0A0K5G0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G375750 PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.1e-28
Identity = 62/77 (80.52%), Postives = 68/77 (88.31%), Query Frame = 1


Query: 4   QESNWKVSNVQFKNIRGTSTTNVAVLLECSKLFPCEGVELRDINLSYGGTNLRNTTIVSS 63
           +ES WKVS+V FKNIRGTS TNV VLLECSKL PCEGV L+DINL+YGGT+ +NTTIVSS
Sbjct: 380 KESKWKVSDVHFKNIRGTSATNVGVLLECSKLLPCEGVVLKDINLTYGGTDSKNTTIVSS 439

Query: 64  CSNAKIATFGVQNPPPC 81
           C NAKI TFGVQNPPPC
Sbjct: 440 CLNAKITTFGVQNPPPC 456

[Close]

BLAST of Csa7G353520 vs. TrEMBL
Match: A0A151U4K7_CAJCA (Exopolygalacturonase clone GBGE184 family OS=Cajanus cajan GN=KK1_006903 PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 3.8e-18
Identity = 46/81 (56.79%), Postives = 57/81 (70.37%), Query Frame = 1


Query: 2   CMQESN--WKVSNVQFKNIRGTSTTNVAVLLECSKLFPCEGVELRDINLSYGGTNLRNTT 61
           CM  S   WK+SN+ F+NI+GT+ +NVAV LECS   PCEGVE+ D++L+Y G  L NTT
Sbjct: 186 CMTPSTSVWKISNIHFRNIKGTTVSNVAVSLECSTRNPCEGVEITDVDLTYAGRLLINTT 245

Query: 62  IVSSCSNAKIATFGVQNPPPC 81
             SSC NAK    G+ NPPPC
Sbjct: 246 FASSCFNAKAIFGGILNPPPC 266

[Close]

BLAST of Csa7G353520 vs. TAIR10
Match: AT2G15450.1 (AT2G15450.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 64.3 bits (155), Expect = 4.0e-11
Identity = 33/77 (42.86%), Postives = 45/77 (58.44%), Query Frame = 1


Query: 5   ESNWKVSNVQFKNIRGTSTTNVAVLLECSKLFPCEGVELRDINLSYGGTNLRNTTIVSSC 64
           ES+ ++ N++ KNI GTS   VAV L+CSK+FPC+ VEL DIN+   G  +++ +  S C
Sbjct: 329 ESHVQIQNLKLKNIYGTSKNKVAVNLQCSKIFPCKNVELIDINIKQNG--VKDGSSTSVC 388

Query: 65  SNAKIATFGVQNPPPCV 82
            N      G   PP C+
Sbjct: 389 ENVDGFARGKMFPPHCL 403

[Close]

BLAST of Csa7G353520 vs. TAIR10
Match: AT4G18180.1 (AT4G18180.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 63.5 bits (153), Expect = 6.9e-11
Identity = 36/83 (43.37%), Postives = 47/83 (56.63%), Query Frame = 1


Query: 6   SNWKVSNVQFKNIRGTSTTNVAVLLECSKLFPCEGVELRDINL----SYGG----TNLRN 65
           S  ++S + FKNIRGTS++ VAV L CS+  PC+ V L +++L    S GG    +N  N
Sbjct: 331 SKVELSEIYFKNIRGTSSSLVAVQLHCSRGMPCKKVYLENVHLDLSSSDGGRKQSSNRGN 390

Query: 66  TTIVSSCSNAKIATFGVQNPPPC 81
             + SSC N +    G Q PPPC
Sbjct: 391 EAVSSSCRNVRANYIGTQIPPPC 413

[Close]

BLAST of Csa7G353520 vs. TAIR10
Match: AT1G05660.1 (AT1G05660.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 61.2 bits (147), Expect = 3.4e-10
Identity = 33/76 (43.42%), Postives = 41/76 (53.95%), Query Frame = 1


Query: 6   SNWKVSNVQFKNIRGTSTTNVAVLLECSKLFPCEGVELRDINLSYGGTNLRNTTIVSSCS 65
           S  K+S V +KNI+GTS T  A+ L CSK  PC G+ L+DI L+Y     + T   S C 
Sbjct: 321 SGVKISQVTYKNIQGTSATQEAMKLVCSKSSPCTGITLQDIKLTYN----KGTPATSFCF 380

Query: 66  NAKIATFGVQNPPPCV 82
           NA   + GV  P  C+
Sbjct: 381 NAVGKSLGVIQPTSCL 392

[Close]

BLAST of Csa7G353520 vs. TAIR10
Match: AT3G07820.1 (AT3G07820.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 60.8 bits (146), Expect = 4.4e-10
Identity = 33/75 (44.00%), Postives = 40/75 (53.33%), Query Frame = 1


Query: 6   SNWKVSNVQFKNIRGTSTTNVAVLLECSKLFPCEGVELRDINLSYGGTNLRNTTIVSSCS 65
           S  K+ N+ FKNIRGTS    AV L CSK +PC+ VE+ DI++ Y G +   T     CS
Sbjct: 315 STIKLVNISFKNIRGTSGNKDAVKLLCSKGYPCQNVEIGDIDIKYNGADGPAT---FHCS 374

Query: 66  NAKIATFGVQNPPPC 81
           N      G Q+P  C
Sbjct: 375 NVSPKILGSQSPKAC 386

[Close]

BLAST of Csa7G353520 vs. TAIR10
Match: AT3G57510.1 (AT3G57510.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 60.5 bits (145), Expect = 5.8e-10
Identity = 31/74 (41.89%), Postives = 43/74 (58.11%), Query Frame = 1


Query: 4   QESNWKVSNVQFKNIRGTSTTNVAVLLECSKLFPCEGVELRDINLSYGGTNLRNTTIVSS 63
           QES  +V NV +KNI GTS T+VA+ L CS+ +PC+G+ L ++ +  GGT        +S
Sbjct: 364 QESAVQVKNVVYKNISGTSATDVAITLNCSEKYPCQGIVLENVKIK-GGT--------AS 423

Query: 64  CSNAKIATFGVQNP 78
           C NA +   G  +P
Sbjct: 424 CKNANVKNQGTVSP 428

[Close]

BLAST of Csa7G353520 vs. NCBI nr
Match: gi|700189408|gb|KGN44641.1| (hypothetical protein Csa_7G353520 [Cucumis sativus])

HSP 1 Score: 171.8 bits (434), Expect = 5.1e-40
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1


Query: 1  MCMQESNWKVSNVQFKNIRGTSTTNVAVLLECSKLFPCEGVELRDINLSYGGTNLRNTTI 60
          MCMQESNWKVSNVQFKNIRGTSTTNVAVLLECSKLFPCEGVELRDINLSYGGTNLRNTTI
Sbjct: 1  MCMQESNWKVSNVQFKNIRGTSTTNVAVLLECSKLFPCEGVELRDINLSYGGTNLRNTTI 60

Query: 61 VSSCSNAKIATFGVQNPPPCVV 83
          VSSCSNAKIATFGVQNPPPCVV
Sbjct: 61 VSSCSNAKIATFGVQNPPPCVV 82

[Close]

BLAST of Csa7G353520 vs. NCBI nr
Match: gi|778708423|ref|XP_011656188.1| (PREDICTED: exopolygalacturonase-like [Cucumis sativus])

HSP 1 Score: 160.6 bits (405), Expect = 1.2e-36
Identity = 77/79 (97.47%), Postives = 78/79 (98.73%), Query Frame = 1


Query: 4   QESNWKVSNVQFKNIRGTSTTNVAVLLECSKLFPCEGVELRDINLSYGGTNLRNTTIVSS 63
           +ESNWKVSNVQFKNIRGTSTTNVAVLLECSKLFPCEGVELRDINLSYGGTNLRNTTIVSS
Sbjct: 372 KESNWKVSNVQFKNIRGTSTTNVAVLLECSKLFPCEGVELRDINLSYGGTNLRNTTIVSS 431

Query: 64  CSNAKIATFGVQNPPPCVV 83
           CSNAKIATFGVQ PPPCVV
Sbjct: 432 CSNAKIATFGVQKPPPCVV 450

[Close]

BLAST of Csa7G353520 vs. NCBI nr
Match: gi|700195561|gb|KGN50738.1| (hypothetical protein Csa_5G222970 [Cucumis sativus])

HSP 1 Score: 160.6 bits (405), Expect = 1.2e-36
Identity = 77/79 (97.47%), Postives = 78/79 (98.73%), Query Frame = 1


Query: 4   QESNWKVSNVQFKNIRGTSTTNVAVLLECSKLFPCEGVELRDINLSYGGTNLRNTTIVSS 63
           +ESNWKVSNVQFKNIRGTSTTNVAVLLECSKLFPCEGVELRDINLSYGGTNLRNTTIVSS
Sbjct: 344 KESNWKVSNVQFKNIRGTSTTNVAVLLECSKLFPCEGVELRDINLSYGGTNLRNTTIVSS 403

Query: 64  CSNAKIATFGVQNPPPCVV 83
           CSNAKIATFGVQ PPPCVV
Sbjct: 404 CSNAKIATFGVQKPPPCVV 422

[Close]

BLAST of Csa7G353520 vs. NCBI nr
Match: gi|700189726|gb|KGN44959.1| (hypothetical protein Csa_7G398210 [Cucumis sativus])

HSP 1 Score: 154.8 bits (390), Expect = 6.4e-35
Identity = 72/78 (92.31%), Postives = 77/78 (98.72%), Query Frame = 1


Query: 3  MQESNWKVSNVQFKNIRGTSTTNVAVLLECSKLFPCEGVELRDINLSYGGTNLRNTTIVS 62
          MQESNWKVS++ FKNIRGTSTTNVAVLLECSKLFPCEGVELRDINL+YGGT+LRNTT+VS
Sbjct: 1  MQESNWKVSDILFKNIRGTSTTNVAVLLECSKLFPCEGVELRDINLTYGGTDLRNTTVVS 60

Query: 63 SCSNAKIATFGVQNPPPC 81
          SCSNAKIATFGVQNPPPC
Sbjct: 61 SCSNAKIATFGVQNPPPC 78

[Close]

BLAST of Csa7G353520 vs. NCBI nr
Match: gi|659101498|ref|XP_008451635.1| (PREDICTED: exopolygalacturonase-like [Cucumis melo])

HSP 1 Score: 141.0 bits (354), Expect = 9.6e-31
Identity = 66/79 (83.54%), Postives = 73/79 (92.41%), Query Frame = 1


Query: 4   QESNWKVSNVQFKNIRGTSTTNVAVLLECSKLFPCEGVELRDINLSYGGTNLRNTTIVSS 63
           +ES WKVS+V FKNIRGTS TNVAVLL+CSKL PCEGVELRDI+L+YGGT+L+NTTIVSS
Sbjct: 378 KESKWKVSDVHFKNIRGTSATNVAVLLDCSKLLPCEGVELRDIDLTYGGTDLKNTTIVSS 437

Query: 64  CSNAKIATFGVQNPPPCVV 83
           CSNAKI TFGVQNPPPC V
Sbjct: 438 CSNAKITTFGVQNPPPCDV 456

The following BLAST results are available for this feature:

BLAST of Csa7G353520 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PGLR_OENOR	1.3e-11	50.67	Exopolygalacturonase (Fragment) OS=Oenothera organensis PE=2 SV=1	[more]
PGLR_TOBAC	1.9e-10	48.00	Polygalacturonase OS=Nicotiana tabacum GN=PG1 PE=2 SV=1	[more]
PGLR_GOSBA	4.2e-10	44.16	Polygalacturonase OS=Gossypium barbadense GN=G9 PE=2 SV=1	[more]
PGLR_GOSHI	7.1e-10	44.16	Polygalacturonase OS=Gossypium hirsutum GN=G9 PE=2 SV=1	[more]
PGLR2_PLAAC	4.6e-09	47.22	Exopolygalacturonase (Fragment) OS=Platanus acerifolia GN=plaa2 PE=1 SV=1	[more]

BLAST of Csa7G353520 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KA01_CUCSA	3.5e-40	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G353520 PE=3 SV=1	[more]
A0A0A0KMA6_CUCSA	8.1e-37	97.47	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G222970 PE=3 SV=1	[more]
A0A0A0K7V3_CUCSA	4.5e-35	92.31	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G398210 PE=3 SV=1	[more]
A0A0A0K5G0_CUCSA	1.1e-28	80.52	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G375750 PE=3 SV=1	[more]
A0A151U4K7_CAJCA	3.8e-18	56.79	Exopolygalacturonase clone GBGE184 family OS=Cajanus cajan GN=KK1_006903 PE=3 SV...	[more]

BLAST of Csa7G353520 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G15450.1	4.0e-11	42.86	Pectin lyase-like superfamily protein	[more]
AT4G18180.1	6.9e-11	43.37	Pectin lyase-like superfamily protein	[more]
AT1G05660.1	3.4e-10	43.42	Pectin lyase-like superfamily protein	[more]
AT3G07820.1	4.4e-10	44.00	Pectin lyase-like superfamily protein	[more]
AT3G57510.1	5.8e-10	41.89	Pectin lyase-like superfamily protein	[more]

BLAST of Csa7G353520 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700189408\|gb\|KGN44641.1\|	5.1e-40	100.00	hypothetical protein Csa_7G353520 [Cucumis sativus]	[more]
gi\|778708423\|ref\|XP_011656188.1\|	1.2e-36	97.47	PREDICTED: exopolygalacturonase-like [Cucumis sativus]	[more]
gi\|700195561\|gb\|KGN50738.1\|	1.2e-36	97.47	hypothetical protein Csa_5G222970 [Cucumis sativus]	[more]
gi\|700189726\|gb\|KGN44959.1\|	6.4e-35	92.31	hypothetical protein Csa_7G398210 [Cucumis sativus]	[more]
gi\|659101498\|ref\|XP_008451635.1\|	9.6e-31	83.54	PREDICTED: exopolygalacturonase-like [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000743	Glyco_hydro_28
IPR011050	Pectin_lyase_fold/virulence
IPR012334	Pectin_lyas_fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0004650	polygalacturonase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0005975	carbohydrate metabolic process

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071555	cell wall organization
biological_process	GO:0005982	starch metabolic process
biological_process	GO:0005985	sucrose metabolic process
biological_process	GO:0005975	carbohydrate metabolic process
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0004650	polygalacturonase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa7G353520.1	Csa7G353520.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000743	Glycoside hydrolase, family 28	PFAM	PF00295	Glyco_hydro_28	coord: 5..64 score: 1.1
IPR011050	Pectin lyase fold/virulence factor	unknown	SSF51126	Pectin lyase-like	coord: 4..81 score: 2.04
IPR012334	Pectin lyase fold	GENE3D	G3DSA:2.160.20.10		coord: 4..80 score: 1.7
None	No IPR available	PANTHER	PTHR31375	FAMILY NOT NAMED	coord: 4..82 score: 2.9
None	No IPR available	PANTHER	PTHR31375:SF16	SUBFAMILY NOT NAMED	coord: 4..82 score: 2.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa7G353520	CsGy7G013190	Cucumber (Gy14) v2	cgybcuB323

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa7G353520	Cucumber (Gy14) v1	cgycuB076
Csa7G353520	Cucurbita maxima (Rimu)	cmacuB384
Csa7G353520	Cucurbita maxima (Rimu)	cmacuB531
Csa7G353520	Cucurbita maxima (Rimu)	cmacuB914
Csa7G353520	Cucurbita moschata (Rifu)	cmocuB374
Csa7G353520	Cucurbita moschata (Rifu)	cmocuB522
Csa7G353520	Cucurbita moschata (Rifu)	cmocuB900
Csa7G353520	Melon (DHL92) v3.5.1	cumeB523
Csa7G353520	Watermelon (Charleston Gray)	cuwcgB525
Csa7G353520	Watermelon (Charleston Gray)	cuwcgB565
Csa7G353520	Watermelon (97103) v1	cuwmB567
Csa7G353520	Watermelon (97103) v1	cuwmB587
Csa7G353520	Cucurbita pepo (Zucchini)	cpecuB157
Csa7G353520	Cucurbita pepo (Zucchini)	cpecuB337
Csa7G353520	Cucurbita pepo (Zucchini)	cpecuB769
Csa7G353520	Bottle gourd (USVL1VR-Ls)	culsiB503
Csa7G353520	Bottle gourd (USVL1VR-Ls)	culsiB526
Csa7G353520	Cucumber (Gy14) v2	cgybcuB152
Csa7G353520	Melon (DHL92) v3.6.1	cumedB502
Csa7G353520	Silver-seed gourd	carcuB0013
Csa7G353520	Silver-seed gourd	carcuB0095
Csa7G353520	Watermelon (97103) v2	cuwmbB550
Csa7G353520	Watermelon (97103) v2	cuwmbB571
Csa7G353520	Wax gourd	cuwgoB705
Csa7G353520	Cucumber (Chinese Long) v2	cucuB132