Csa7G353000 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa7G353000
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionPolygalacturonase; contains IPR000743 (Glycoside hydrolase, family 28), IPR011050 (Pectin lyase fold/virulence factor)
LocationChr7 : 12678471 .. 12679317 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAAGAAATCTTAGTCTCATTCAAATCCTTCTCTTAGTATTTGCTTGGCAATGTTGTGCTGTCGTTTTCTATGACATCACCGGCACTCAAAATCGTCTCAAGGGGATCGTACCAACAACAAATGAGCAGTTTCTTCGTCCTACAGAAGCACCCCGGCGTCTTGGCTTCAATACTCTTTCCAACATTGGCGGCACGGTGAATGACATTAAGGCAAATGTTGATCTAAATGAAAATGGTGTGTCAATTTTTGATGTTACAAAACATGGAGCTAAAGCTAATGGAAAAACTGATGATGCACAGGTGAGAAATATCAACACACACTAACTTCAAACCTTTTAATTTGAGTTAATTATCTGTAAATGGATGACTATAGGGAATTGTATATATTTTTTGCTATTAAATTCTATCGTTATATTATATTTTGGTGGATATTGATGGTACAATTATTTCAACATTTTTTTGGGAAAAAGAGTTATAATTTTTTTATTTTTTTTCCATTTTGAAGGCATTCATGACAACATGGATTGCAGCATGCCGGAACACAGTCGGTCCGGCAAAGTTCTTGATCCCACAAGGCACATTTCTGGTGGGCCCGGTGACTTTCGCTGGTCCTTGCAAAAGCTTTCCGATCACCCTCGAAAATGAAGGAACTGTAAAGGCCACCACCGATATTAGTGCATATTCATCTCCAGAATGGTTCTCCGTTGAAGATATTACTGGTTTCATCCTCACCGGCTCCGGCGTCTTTGACGGCCAAGGCCTCTCTGTTTGGTCTTACAACGACTGCAAGAAAAACAACTTATGCCAACTTCTTCCAATCGTAACTATATATTTTTGCCTTTAA

mRNA sequence

ATGACAAGAAATCTTAGTCTCATTCAAATCCTTCTCTTAGTATTTGCTTGGCAATGTTGTGCTGTCGTTTTCTATGACATCACCGGCACTCAAAATCGTCTCAAGGGGATCGTACCAACAACAAATGAGCAGTTTCTTCGTCCTACAGAAGCACCCCGGCGTCTTGGCTTCAATACTCTTTCCAACATTGGCGGCACGGTGAATGACATTAAGGCAAATGTTGATCTAAATGAAAATGGTGTGTCAATTTTTGATGTTACAAAACATGGAGCTAAAGCTAATGGAAAAACTGATGATGCACAGGCATTCATGACAACATGGATTGCAGCATGCCGGAACACAGTCGGTCCGGCAAAGTTCTTGATCCCACAAGGCACATTTCTGGTGGGCCCGGTGACTTTCGCTGGTCCTTGCAAAAGCTTTCCGATCACCCTCGAAAATGAAGGAACTGTAAAGGCCACCACCGATATTAGTGCATATTCATCTCCAGAATGGTTCTCCGTTGAAGATATTACTGGTTTCATCCTCACCGGCTCCGGCGTCTTTGACGGCCAAGGCCTCTCTGTTTGGTCTTACAACGACTGCAAGAAAAACAACTTATGCCAACTTCTTCCAATCGTAACTATATATTTTTGCCTTTAA

Coding sequence (CDS)

ATGACAAGAAATCTTAGTCTCATTCAAATCCTTCTCTTAGTATTTGCTTGGCAATGTTGTGCTGTCGTTTTCTATGACATCACCGGCACTCAAAATCGTCTCAAGGGGATCGTACCAACAACAAATGAGCAGTTTCTTCGTCCTACAGAAGCACCCCGGCGTCTTGGCTTCAATACTCTTTCCAACATTGGCGGCACGGTGAATGACATTAAGGCAAATGTTGATCTAAATGAAAATGGTGTGTCAATTTTTGATGTTACAAAACATGGAGCTAAAGCTAATGGAAAAACTGATGATGCACAGGCATTCATGACAACATGGATTGCAGCATGCCGGAACACAGTCGGTCCGGCAAAGTTCTTGATCCCACAAGGCACATTTCTGGTGGGCCCGGTGACTTTCGCTGGTCCTTGCAAAAGCTTTCCGATCACCCTCGAAAATGAAGGAACTGTAAAGGCCACCACCGATATTAGTGCATATTCATCTCCAGAATGGTTCTCCGTTGAAGATATTACTGGTTTCATCCTCACCGGCTCCGGCGTCTTTGACGGCCAAGGCCTCTCTGTTTGGTCTTACAACGACTGCAAGAAAAACAACTTATGCCAACTTCTTCCAATCGTAACTATATATTTTTGCCTTTAA

Protein sequence

MTRNLSLIQILLLVFAWQCCAVVFYDITGTQNRLKGIVPTTNEQFLRPTEAPRRLGFNTLSNIGGTVNDIKANVDLNENGVSIFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKFLIPQGTFLVGPVTFAGPCKSFPITLENEGTVKATTDISAYSSPEWFSVEDITGFILTGSGVFDGQGLSVWSYNDCKKNNLCQLLPIVTIYFCL*
Homology
[Close]
BLAST of Csa7G353000 vs. Swiss-Prot
Match: PGLR1_ARATH (Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana GN=PGA3 PE=2 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 7.4e-27
Identity = 60/129 (46.51%), Postives = 80/129 (62.02%), Query Frame = 1 

Query: 77  NENGVSIFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKFLIPQGTFLVGPVTFAG 136
           N    +++D+TK GA  +G T+  +AF+ TWI  C + V PA  L+P+GTFL GPV FAG
Sbjct: 45  NSGNPTVYDITKFGAVGDGSTNTFKAFLNTWIQVCDSPV-PATLLVPKGTFLAGPVIFAG 104

Query: 137 PCKSFPITLENEGTVKATTDISAYSSPEWFSVEDITGFILTGSGVFDGQGLSVWSYNDCK 196
           PCKS  +T+   GT+ ATT  S Y++PEWF  E +   +LTG+G F G+G +VW  + C 
Sbjct: 105 PCKS-KVTVNVIGTIIATT--SGYATPEWFLFERVDNLVLTGTGTFHGKGEAVWKADGCG 164

Query: 197 KNNLCQLLP 206
           K   C L P
Sbjct: 165 KKVQCNLPP 169

[Close]
BLAST of Csa7G353000 vs. Swiss-Prot
Match: PGLR3_MAIZE (Exopolygalacturonase OS=Zea mays GN=PG2C PE=2 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.2e-24
Identity = 56/123 (45.53%), Postives = 71/123 (57.72%), Query Frame = 1 

Query: 84  FDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKFLIPQGTFLVGPVTFAGPCKSFPI 143
           FD+TK GA  NGKTD  +A    W +AC  T G    LIP+G FLVGP+ F GPCK   +
Sbjct: 41  FDITKLGASGNGKTDSTKAVQEAWASACGGT-GKQTILIPKGDFLVGPLNFTGPCKG-DV 100

Query: 144 TLENEGTVKATTDISAYSS-PEWFSVEDITGFILTGSGVFDGQGLSVWSYNDCKKNNLCQ 203
           T++  G + ATTD+S Y     W  +  +   ++TG G  DGQG +VWS N C K   C+
Sbjct: 101 TIQVNGNLLATTDLSQYKDHGNWIEILRVDNLVITGKGKLDGQGPAVWSKNSCVKKYDCK 160

Query: 204 LLP 206
           +LP
Sbjct: 161 ILP 161

[Close]
BLAST of Csa7G353000 vs. Swiss-Prot
Match: PGLR1_MAIZE (Exopolygalacturonase OS=Zea mays GN=PG1 PE=1 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 5.9e-24
Identity = 55/123 (44.72%), Postives = 71/123 (57.72%), Query Frame = 1 

Query: 84  FDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKFLIPQGTFLVGPVTFAGPCKSFPI 143
           FD+TK GA  NGKTD  +A    W +AC  T G    LIP+G FLVG + F GPCK   +
Sbjct: 41  FDITKLGASGNGKTDSTKAVQEAWASACGGT-GKQTILIPKGDFLVGQLNFTGPCKG-DV 100

Query: 144 TLENEGTVKATTDISAYSSP-EWFSVEDITGFILTGSGVFDGQGLSVWSYNDCKKNNLCQ 203
           T++ +G + ATTD+S Y     W  +  +   ++TG G  DGQG +VWS N C K   C+
Sbjct: 101 TIQVDGNLLATTDLSQYKDHGNWIEILRVDNLVITGKGNLDGQGPAVWSKNSCTKKYDCK 160

Query: 204 LLP 206
           +LP
Sbjct: 161 ILP 161

[Close]
BLAST of Csa7G353000 vs. Swiss-Prot
Match: PGLR2_MAIZE (Exopolygalacturonase OS=Zea mays GN=PG9 PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 5.9e-24
Identity = 55/123 (44.72%), Postives = 71/123 (57.72%), Query Frame = 1 

Query: 84  FDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKFLIPQGTFLVGPVTFAGPCKSFPI 143
           FD+TK GA  NGKTD  +A    W +AC  T G    LIP+G FLVG + F GPCK   +
Sbjct: 41  FDITKLGASGNGKTDSTKAVQEAWASACGGT-GKQTILIPKGDFLVGQLNFTGPCKG-DV 100

Query: 144 TLENEGTVKATTDISAYSSP-EWFSVEDITGFILTGSGVFDGQGLSVWSYNDCKKNNLCQ 203
           T++ +G + ATTD+S Y     W  +  +   ++TG G  DGQG +VWS N C K   C+
Sbjct: 101 TIQVDGNLLATTDLSQYKEHGNWIEILRVDNLVITGKGNLDGQGPAVWSKNSCTKKYDCK 160

Query: 204 LLP 206
           +LP
Sbjct: 161 ILP 161

[Close]
BLAST of Csa7G353000 vs. Swiss-Prot
Match: PGLR2_PLAAC (Exopolygalacturonase (Fragment) OS=Platanus acerifolia GN=plaa2 PE=1 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 5.2e-20
Identity = 51/121 (42.15%), Postives = 68/121 (56.20%), Query Frame = 1 

Query: 82  SIFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKFLIPQGTFLVGPVTFAGPCKSF 141
           S+F+V  +GAK  G  D +QA M  W AAC +  GP+  LIP+G + +G V   GPCK  
Sbjct: 8   SVFNVNDYGAKGAG--DISQAVMKAWKAACASQ-GPSTVLIPKGNYNMGEVAMQGPCKGS 67

Query: 142 PITLENEGTVKATTDISAYSSPEWFSVEDITGFILTGSGVFDGQGLSVWSYNDCKKNNLC 201
            I  + +G VKA  D S + S  W S   I G  ++G+G  DGQG + W+ N+C KN  C
Sbjct: 68  KIGFQIDGVVKAPADPSKFKSDGWVSFYRIDGLTVSGTGTLDGQGQTAWAKNNCDKNPNC 125

Query: 202 Q 203
           +
Sbjct: 128 K 125

[Close]
BLAST of Csa7G353000 vs. TrEMBL
Match: A0A0A0K588_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G353000 PE=3 SV=1)

HSP 1 Score: 439.9 bits (1130), Expect = 1.8e-120
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 1 

Query: 1   MTRNLSLIQILLLVFAWQCCAVVFYDITGTQNRLKGIVPTTNEQFLRPTEAPRRLGFNTL 60
           MTRNLSLIQILLLVFAWQCCAVVFYDITGTQNRLKGIVPTTNEQFLRPTEAPRRLGFNTL
Sbjct: 1   MTRNLSLIQILLLVFAWQCCAVVFYDITGTQNRLKGIVPTTNEQFLRPTEAPRRLGFNTL 60

Query: 61  SNIGGTVNDIKANVDLNENGVSIFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKF 120
           SNIGGTVNDIKANVDLNENGVSIFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKF
Sbjct: 61  SNIGGTVNDIKANVDLNENGVSIFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKF 120

Query: 121 LIPQGTFLVGPVTFAGPCKSFPITLENEGTVKATTDISAYSSPEWFSVEDITGFILTGSG 180
           LIPQGTFLVGPVTFAGPCKSFPITLENEGTVKATTDISAYSSPEWFSVEDITGFILTGSG
Sbjct: 121 LIPQGTFLVGPVTFAGPCKSFPITLENEGTVKATTDISAYSSPEWFSVEDITGFILTGSG 180

Query: 181 VFDGQGLSVWSYNDCKKNNLCQLLPIVTIYFCL 214
           VFDGQGLSVWSYNDCKKNNLCQLLPIVTIYFCL
Sbjct: 181 VFDGQGLSVWSYNDCKKNNLCQLLPIVTIYFCL 213

[Close]
BLAST of Csa7G353000 vs. TrEMBL
Match: A0A0A0KAZ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G398720 PE=3 SV=1)

HSP 1 Score: 385.2 bits (988), Expect = 5.2e-104
Identity = 184/210 (87.62%), Postives = 195/210 (92.86%), Query Frame = 1 

Query: 1   MTRNLSLIQILLLVFAWQCCAVVFYDITGTQNRLKGIVPTTNEQFLRPTEAPRRLGFNTL 60
           MTRN SLIQILLLVFA QCCAV+F D+TGTQN LKGIVP  N+QFLRP E+PR LGF+TL
Sbjct: 1   MTRNFSLIQILLLVFACQCCAVIFDDVTGTQNLLKGIVPKANKQFLRPAESPRHLGFSTL 60

Query: 61  SNIGGTVNDIKANVDLNENGVSIFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKF 120
            NIGG VNDIKANVDLNENG S+FDVTKHGAK +G+TDDA AFMTTWIAACRNTVGP KF
Sbjct: 61  PNIGGRVNDIKANVDLNENGGSVFDVTKHGAKGDGETDDAHAFMTTWIAACRNTVGPTKF 120

Query: 121 LIPQGTFLVGPVTFAGPCKSFPITLENEGTVKATTDISAYSSPEWFSVEDITGFILTGSG 180
           LIPQGTFLVGPVTFAGPCKSFPITLEN+GTVKATTDISAYSSPEWFS+EDITGFILTGSG
Sbjct: 121 LIPQGTFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSPEWFSIEDITGFILTGSG 180

Query: 181 VFDGQGLSVWSYNDCKKNNLCQLLPIVTIY 211
           VFDGQGLSVW YNDCKKNNLCQLLPIVTI+
Sbjct: 181 VFDGQGLSVWPYNDCKKNNLCQLLPIVTIF 210

[Close]
BLAST of Csa7G353000 vs. TrEMBL
Match: A0A0A0KMA6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G222970 PE=3 SV=1)

HSP 1 Score: 335.9 bits (860), Expect = 3.6e-89
Identity = 160/174 (91.95%), Postives = 167/174 (95.98%), Query Frame = 1 

Query: 33  RLKGIVPTTNEQFLRPTEAPRRLGFNTLSNIGGTVNDIKANVDLNENGVSIFDVTKHGAK 92
           RL GIVPTTN+QFLRP EAPR LGFNTL +IGGTVNDI ANVDLNENG S+FDVTKHGAK
Sbjct: 5   RLYGIVPTTNKQFLRPAEAPRHLGFNTLPDIGGTVNDINANVDLNENGGSVFDVTKHGAK 64

Query: 93  ANGKTDDAQAFMTTWIAACRNTVGPAKFLIPQGTFLVGPVTFAGPCKSFPITLENEGTVK 152
           A+GKTDDAQAFMTTWIAACRNTVGPAKFLIPQGTFLVGPVTFAGPCKS+PITLEN+GTVK
Sbjct: 65  ADGKTDDAQAFMTTWIAACRNTVGPAKFLIPQGTFLVGPVTFAGPCKSYPITLENQGTVK 124

Query: 153 ATTDISAYSSPEWFSVEDITGFILTGSGVFDGQGLSVWSYNDCKKNNLCQLLPI 207
           ATTDISAYSSPEWFS+EDITGFILTGSGVFDGQGLSVW YNDCKKNNLCQLLPI
Sbjct: 125 ATTDISAYSSPEWFSLEDITGFILTGSGVFDGQGLSVWPYNDCKKNNLCQLLPI 178

[Close]
BLAST of Csa7G353000 vs. TrEMBL
Match: A0A0A0K5I2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G398220 PE=3 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 6.7e-83
Identity = 157/192 (81.77%), Postives = 167/192 (86.98%), Query Frame = 1 

Query: 1   MTRNLSLIQILLLVFAWQCCA---VVFYDITGTQNRLKGIVPTTNEQFLRPTEAPRRLGF 60
           MTRN SLIQILLLVFAW+CCA    +F D   TQ  L GIVP  NEQFLRP EAP  LGF
Sbjct: 1   MTRNFSLIQILLLVFAWECCARAAAIFIDTINTQILLNGIVPKVNEQFLRPAEAPWHLGF 60

Query: 61  NTLSNIGG-TVNDIKANVDLNENGVSIFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVG 120
           +TL NIGG TVNDIK NVDLNENG  +FDVTKHGAKA+G+TDDAQAFMTTWIAACRNTVG
Sbjct: 61  STLPNIGGGTVNDIKVNVDLNENGGLVFDVTKHGAKADGETDDAQAFMTTWIAACRNTVG 120

Query: 121 PAKFLIPQGTFLVGPVTFAGPCKSFPITLENEGTVKATTDISAYSSPEWFSVEDITGFIL 180
           PAKFLIPQ  FLVGPVTFAGPCKSFPITLEN+GTVKATTDISAYSS EWFS+ED+TGFIL
Sbjct: 121 PAKFLIPQDIFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSSEWFSIEDVTGFIL 180

Query: 181 TGSGVFDGQGLS 189
           TGSGVFDGQG+S
Sbjct: 181 TGSGVFDGQGVS 192

[Close]
BLAST of Csa7G353000 vs. TrEMBL
Match: A0A0A0K5G0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G375750 PE=3 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 8.7e-75
Identity = 145/212 (68.40%), Postives = 165/212 (77.83%), Query Frame = 1 

Query: 1   MTRNLSLIQILLLVFAWQC----CAVVFYDITGTQNRLKGIVPTTNEQFL-RPTEAPRRL 60
           ++R LSL QILLLVFAWQC     A++  DI    N    I+ T N+Q +  PT  P  L
Sbjct: 3   ISRILSLFQILLLVFAWQCYDKVAAIITDDIANLNNE---IISTINQQLIPSPTATPGPL 62

Query: 61  GFNTLSNIGGTVNDIK-ANVDLNENGVSIFDVTKHGAKANGKTDDAQAFMTTWIAACRNT 120
           G  TL ++  TVND    N DLNENG S+FDVTKHGAKA+GKTDDAQAF TTWIAACRNT
Sbjct: 63  GMETLPDLDDTVNDSNNTNNDLNENGESVFDVTKHGAKADGKTDDAQAFETTWIAACRNT 122

Query: 121 VGPAKFLIPQGTFLVGPVTFAGPCKSFPITLENEGTVKATTDISAYSSPEWFSVEDITGF 180
           VGP K LIP+GT+LVGP+T AGPCKSFPIT+EN+G VKATTD+S YSSPEWFS+EDITGF
Sbjct: 123 VGPVKILIPKGTYLVGPMTLAGPCKSFPITIENQGIVKATTDLSEYSSPEWFSIEDITGF 182

Query: 181 ILTGSGVFDGQGLSVWSYNDCKKNNLCQLLPI 207
           ILTGSGVFDGQG +VW+YNDCK N  CQLLPI
Sbjct: 183 ILTGSGVFDGQGTAVWAYNDCKSNKDCQLLPI 211

[Close]
BLAST of Csa7G353000 vs. TAIR10
Match: AT1G02790.1 (AT1G02790.1 polygalacturonase 4)

HSP 1 Score: 122.1 bits (305), Expect = 4.2e-28
Identity = 60/129 (46.51%), Postives = 80/129 (62.02%), Query Frame = 1 

Query: 77  NENGVSIFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKFLIPQGTFLVGPVTFAG 136
           N    +++D+TK GA  +G T+  +AF+ TWI  C + V PA  L+P+GTFL GPV FAG
Sbjct: 45  NSGNPTVYDITKFGAVGDGSTNTFKAFLNTWIQVCDSPV-PATLLVPKGTFLAGPVIFAG 104

Query: 137 PCKSFPITLENEGTVKATTDISAYSSPEWFSVEDITGFILTGSGVFDGQGLSVWSYNDCK 196
           PCKS  +T+   GT+ ATT  S Y++PEWF  E +   +LTG+G F G+G +VW  + C 
Sbjct: 105 PCKS-KVTVNVIGTIIATT--SGYATPEWFLFERVDNLVLTGTGTFHGKGEAVWKADGCG 164

Query: 197 KNNLCQLLP 206
           K   C L P
Sbjct: 165 KKVQCNLPP 169

[Close]
BLAST of Csa7G353000 vs. TAIR10
Match: AT2G15450.1 (AT2G15450.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 107.5 bits (267), Expect = 1.1e-23
Identity = 51/122 (41.80%), Postives = 68/122 (55.74%), Query Frame = 1 

Query: 83  IFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKFLIPQGTFLVGPVTFAGPCKSFP 142
           +F+V +HGAK +GKTD+A AF + W  AC+   G +K  +P+GTF +G V F GPCK+ P
Sbjct: 30  VFNVQRHGAKPDGKTDNANAFTSIWSRACKRISGSSKIYVPKGTFYLGGVEFVGPCKN-P 89

Query: 143 ITLENEGTVKATTDISAYSSPEWFSVEDITGFILTGSGVFDGQGLSVWSYNDCKKNNLCQ 202
           I    +GT+ A  + S      W +   I    ++GSG  DGQG   W +NDC  N  C 
Sbjct: 90  IEFIIDGTLLAPANPSDIKQDTWINFRYINNLSISGSGTLDGQGKQSWPHNDCHTNPNCP 149

Query: 203 LL 205
            L
Sbjct: 150 KL 150

[Close]
BLAST of Csa7G353000 vs. TAIR10
Match: AT2G15460.1 (AT2G15460.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 107.5 bits (267), Expect = 1.1e-23
Identity = 51/122 (41.80%), Postives = 68/122 (55.74%), Query Frame = 1 

Query: 83  IFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKFLIPQGTFLVGPVTFAGPCKSFP 142
           +F+V +HGAK +GKTD+A AF + W  AC+   G +K  +P+GTF +G V F GPCK+ P
Sbjct: 30  VFNVQRHGAKPDGKTDNANAFTSIWSRACKRISGSSKIYVPKGTFYLGGVEFVGPCKN-P 89

Query: 143 ITLENEGTVKATTDISAYSSPEWFSVEDITGFILTGSGVFDGQGLSVWSYNDCKKNNLCQ 202
           I    +GT+ A  + S      W +   I    ++GSG  DGQG   W +NDC  N  C 
Sbjct: 90  IEFIIDGTLLAPANPSDIKQDTWINFRYINNLSISGSGTLDGQGKQSWPHNDCHTNPNCP 149

Query: 203 LL 205
            L
Sbjct: 150 KL 150

[Close]
BLAST of Csa7G353000 vs. TAIR10
Match: AT2G26620.1 (AT2G26620.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 105.9 bits (263), Expect = 3.1e-23
Identity = 50/124 (40.32%), Postives = 68/124 (54.84%), Query Frame = 1 

Query: 83  IFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKFLIPQGTFLVGPVTFAGPCKSFP 142
           +F+V +HG+K +GKTD+  AF + W  AC+   G +K  +P+GTF +G V F GPCK+ P
Sbjct: 30  VFNVQRHGSKPDGKTDNTNAFTSIWSRACKRISGSSKIYVPKGTFYLGGVEFVGPCKN-P 89

Query: 143 ITLENEGTVKATTDISAYSSPEWFSVEDITGFILTGSGVFDGQGLSVWSYNDCKKNNLCQ 202
           I    +GT+ A  + +      W +   I    ++GSG  DGQG   W  NDC KN  C 
Sbjct: 90  IEFIIDGTLLAPANPNDIKQDTWINFRYINNLSISGSGTLDGQGKQSWPLNDCHKNPNCP 149

Query: 203 LLPI 207
            L I
Sbjct: 150 KLAI 152

[Close]
BLAST of Csa7G353000 vs. TAIR10
Match: AT4G13760.1 (AT4G13760.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 104.0 bits (258), Expect = 1.2e-22
Identity = 49/122 (40.16%), Postives = 67/122 (54.92%), Query Frame = 1 

Query: 83  IFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKFLIPQGTFLVGPVTFAGPCKSFP 142
           +F+V +HG+K++GKTD+   F + W  ACR   G +K  +P+GTF +G V F GPCK+ P
Sbjct: 30  MFNVQRHGSKSDGKTDNTNVFTSVWNRACRRKSGSSKIYVPKGTFYLGGVEFVGPCKN-P 89

Query: 143 ITLENEGTVKATTDISAYSSPEWFSVEDITGFILTGSGVFDGQGLSVWSYNDCKKNNLCQ 202
           I    +GT+ A  + +      W   + I    ++GSG  DGQG   W  NDC KN  C 
Sbjct: 90  IEFLIDGTLLAPANPNNIKQDTWIKFKYINDLSISGSGTLDGQGKQSWPLNDCHKNPNCP 149

Query: 203 LL 205
            L
Sbjct: 150 KL 150

[Close]
BLAST of Csa7G353000 vs. NCBI nr
Match: gi|700189405|gb|KGN44638.1| (hypothetical protein Csa_7G353000 [Cucumis sativus])

HSP 1 Score: 439.9 bits (1130), Expect = 2.6e-120
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 1 

Query: 1   MTRNLSLIQILLLVFAWQCCAVVFYDITGTQNRLKGIVPTTNEQFLRPTEAPRRLGFNTL 60
           MTRNLSLIQILLLVFAWQCCAVVFYDITGTQNRLKGIVPTTNEQFLRPTEAPRRLGFNTL
Sbjct: 1   MTRNLSLIQILLLVFAWQCCAVVFYDITGTQNRLKGIVPTTNEQFLRPTEAPRRLGFNTL 60

Query: 61  SNIGGTVNDIKANVDLNENGVSIFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKF 120
           SNIGGTVNDIKANVDLNENGVSIFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKF
Sbjct: 61  SNIGGTVNDIKANVDLNENGVSIFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKF 120

Query: 121 LIPQGTFLVGPVTFAGPCKSFPITLENEGTVKATTDISAYSSPEWFSVEDITGFILTGSG 180
           LIPQGTFLVGPVTFAGPCKSFPITLENEGTVKATTDISAYSSPEWFSVEDITGFILTGSG
Sbjct: 121 LIPQGTFLVGPVTFAGPCKSFPITLENEGTVKATTDISAYSSPEWFSVEDITGFILTGSG 180

Query: 181 VFDGQGLSVWSYNDCKKNNLCQLLPIVTIYFCL 214
           VFDGQGLSVWSYNDCKKNNLCQLLPIVTIYFCL
Sbjct: 181 VFDGQGLSVWSYNDCKKNNLCQLLPIVTIYFCL 213

[Close]
BLAST of Csa7G353000 vs. NCBI nr
Match: gi|778708423|ref|XP_011656188.1| (PREDICTED: exopolygalacturonase-like [Cucumis sativus])

HSP 1 Score: 389.8 bits (1000), Expect = 3.1e-105
Identity = 187/206 (90.78%), Postives = 196/206 (95.15%), Query Frame = 1 

Query: 1   MTRNLSLIQILLLVFAWQCCAVVFYDITGTQNRLKGIVPTTNEQFLRPTEAPRRLGFNTL 60
           MTRNLSLIQI+LL FAWQ CAV+F DITGTQN LKGIVPTTN+QFLRP EAPR LGFNTL
Sbjct: 1   MTRNLSLIQIILLEFAWQSCAVIFNDITGTQNLLKGIVPTTNKQFLRPAEAPRHLGFNTL 60

Query: 61  SNIGGTVNDIKANVDLNENGVSIFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKF 120
            +IGGTVNDI ANVDLNENG S+FDVTKHGAKA+GKTDDAQAFMTTWIAACRNTVGPAKF
Sbjct: 61  PDIGGTVNDINANVDLNENGGSVFDVTKHGAKADGKTDDAQAFMTTWIAACRNTVGPAKF 120

Query: 121 LIPQGTFLVGPVTFAGPCKSFPITLENEGTVKATTDISAYSSPEWFSVEDITGFILTGSG 180
           LIPQGTFLVGPVTFAGPCKS+PITLEN+GTVKATTDISAYSSPEWFS+EDITGFILTGSG
Sbjct: 121 LIPQGTFLVGPVTFAGPCKSYPITLENQGTVKATTDISAYSSPEWFSLEDITGFILTGSG 180

Query: 181 VFDGQGLSVWSYNDCKKNNLCQLLPI 207
           VFDGQGLSVW YNDCKKNNLCQLLPI
Sbjct: 181 VFDGQGLSVWPYNDCKKNNLCQLLPI 206

[Close]
BLAST of Csa7G353000 vs. NCBI nr
Match: gi|700189728|gb|KGN44961.1| (hypothetical protein Csa_7G398720 [Cucumis sativus])

HSP 1 Score: 385.2 bits (988), Expect = 7.5e-104
Identity = 184/210 (87.62%), Postives = 195/210 (92.86%), Query Frame = 1 

Query: 1   MTRNLSLIQILLLVFAWQCCAVVFYDITGTQNRLKGIVPTTNEQFLRPTEAPRRLGFNTL 60
           MTRN SLIQILLLVFA QCCAV+F D+TGTQN LKGIVP  N+QFLRP E+PR LGF+TL
Sbjct: 1   MTRNFSLIQILLLVFACQCCAVIFDDVTGTQNLLKGIVPKANKQFLRPAESPRHLGFSTL 60

Query: 61  SNIGGTVNDIKANVDLNENGVSIFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVGPAKF 120
            NIGG VNDIKANVDLNENG S+FDVTKHGAK +G+TDDA AFMTTWIAACRNTVGP KF
Sbjct: 61  PNIGGRVNDIKANVDLNENGGSVFDVTKHGAKGDGETDDAHAFMTTWIAACRNTVGPTKF 120

Query: 121 LIPQGTFLVGPVTFAGPCKSFPITLENEGTVKATTDISAYSSPEWFSVEDITGFILTGSG 180
           LIPQGTFLVGPVTFAGPCKSFPITLEN+GTVKATTDISAYSSPEWFS+EDITGFILTGSG
Sbjct: 121 LIPQGTFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSPEWFSIEDITGFILTGSG 180

Query: 181 VFDGQGLSVWSYNDCKKNNLCQLLPIVTIY 211
           VFDGQGLSVW YNDCKKNNLCQLLPIVTI+
Sbjct: 181 VFDGQGLSVWPYNDCKKNNLCQLLPIVTIF 210

[Close]
BLAST of Csa7G353000 vs. NCBI nr
Match: gi|700195561|gb|KGN50738.1| (hypothetical protein Csa_5G222970 [Cucumis sativus])

HSP 1 Score: 335.9 bits (860), Expect = 5.2e-89
Identity = 160/174 (91.95%), Postives = 167/174 (95.98%), Query Frame = 1 

Query: 33  RLKGIVPTTNEQFLRPTEAPRRLGFNTLSNIGGTVNDIKANVDLNENGVSIFDVTKHGAK 92
           RL GIVPTTN+QFLRP EAPR LGFNTL +IGGTVNDI ANVDLNENG S+FDVTKHGAK
Sbjct: 5   RLYGIVPTTNKQFLRPAEAPRHLGFNTLPDIGGTVNDINANVDLNENGGSVFDVTKHGAK 64

Query: 93  ANGKTDDAQAFMTTWIAACRNTVGPAKFLIPQGTFLVGPVTFAGPCKSFPITLENEGTVK 152
           A+GKTDDAQAFMTTWIAACRNTVGPAKFLIPQGTFLVGPVTFAGPCKS+PITLEN+GTVK
Sbjct: 65  ADGKTDDAQAFMTTWIAACRNTVGPAKFLIPQGTFLVGPVTFAGPCKSYPITLENQGTVK 124

Query: 153 ATTDISAYSSPEWFSVEDITGFILTGSGVFDGQGLSVWSYNDCKKNNLCQLLPI 207
           ATTDISAYSSPEWFS+EDITGFILTGSGVFDGQGLSVW YNDCKKNNLCQLLPI
Sbjct: 125 ATTDISAYSSPEWFSLEDITGFILTGSGVFDGQGLSVWPYNDCKKNNLCQLLPI 178

[Close]
BLAST of Csa7G353000 vs. NCBI nr
Match: gi|700189727|gb|KGN44960.1| (hypothetical protein Csa_7G398220 [Cucumis sativus])

HSP 1 Score: 315.1 bits (806), Expect = 9.6e-83
Identity = 157/192 (81.77%), Postives = 167/192 (86.98%), Query Frame = 1 

Query: 1   MTRNLSLIQILLLVFAWQCCA---VVFYDITGTQNRLKGIVPTTNEQFLRPTEAPRRLGF 60
           MTRN SLIQILLLVFAW+CCA    +F D   TQ  L GIVP  NEQFLRP EAP  LGF
Sbjct: 1   MTRNFSLIQILLLVFAWECCARAAAIFIDTINTQILLNGIVPKVNEQFLRPAEAPWHLGF 60

Query: 61  NTLSNIGG-TVNDIKANVDLNENGVSIFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVG 120
           +TL NIGG TVNDIK NVDLNENG  +FDVTKHGAKA+G+TDDAQAFMTTWIAACRNTVG
Sbjct: 61  STLPNIGGGTVNDIKVNVDLNENGGLVFDVTKHGAKADGETDDAQAFMTTWIAACRNTVG 120

Query: 121 PAKFLIPQGTFLVGPVTFAGPCKSFPITLENEGTVKATTDISAYSSPEWFSVEDITGFIL 180
           PAKFLIPQ  FLVGPVTFAGPCKSFPITLEN+GTVKATTDISAYSS EWFS+ED+TGFIL
Sbjct: 121 PAKFLIPQDIFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSSEWFSIEDVTGFIL 180

Query: 181 TGSGVFDGQGLS 189
           TGSGVFDGQG+S
Sbjct: 181 TGSGVFDGQGVS 192

The following BLAST results are available for this feature:
BLAST of Csa7G353000 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PGLR1_ARATH7.4e-2746.51Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana GN=PGA3 PE=2 SV=1[more]
PGLR3_MAIZE1.2e-2445.53Exopolygalacturonase OS=Zea mays GN=PG2C PE=2 SV=1[more]
PGLR1_MAIZE5.9e-2444.72Exopolygalacturonase OS=Zea mays GN=PG1 PE=1 SV=1[more]
PGLR2_MAIZE5.9e-2444.72Exopolygalacturonase OS=Zea mays GN=PG9 PE=2 SV=1[more]
PGLR2_PLAAC5.2e-2042.15Exopolygalacturonase (Fragment) OS=Platanus acerifolia GN=plaa2 PE=1 SV=1[more]
BLAST of Csa7G353000 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K588_CUCSA1.8e-120100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G353000 PE=3 SV=1[more]
A0A0A0KAZ2_CUCSA5.2e-10487.62Uncharacterized protein OS=Cucumis sativus GN=Csa_7G398720 PE=3 SV=1[more]
A0A0A0KMA6_CUCSA3.6e-8991.95Uncharacterized protein OS=Cucumis sativus GN=Csa_5G222970 PE=3 SV=1[more]
A0A0A0K5I2_CUCSA6.7e-8381.77Uncharacterized protein OS=Cucumis sativus GN=Csa_7G398220 PE=3 SV=1[more]
A0A0A0K5G0_CUCSA8.7e-7568.40Uncharacterized protein OS=Cucumis sativus GN=Csa_7G375750 PE=3 SV=1[more]
BLAST of Csa7G353000 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G02790.14.2e-2846.51 polygalacturonase 4[more]
AT2G15450.11.1e-2341.80 Pectin lyase-like superfamily protein[more]
AT2G15460.11.1e-2341.80 Pectin lyase-like superfamily protein[more]
AT2G26620.13.1e-2340.32 Pectin lyase-like superfamily protein[more]
AT4G13760.11.2e-2240.16 Pectin lyase-like superfamily protein[more]
BLAST of Csa7G353000 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700189405|gb|KGN44638.1|2.6e-120100.00hypothetical protein Csa_7G353000 [Cucumis sativus][more]
gi|778708423|ref|XP_011656188.1|3.1e-10590.78PREDICTED: exopolygalacturonase-like [Cucumis sativus][more]
gi|700189728|gb|KGN44961.1|7.5e-10487.62hypothetical protein Csa_7G398720 [Cucumis sativus][more]
gi|700195561|gb|KGN50738.1|5.2e-8991.95hypothetical protein Csa_5G222970 [Cucumis sativus][more]
gi|700189727|gb|KGN44960.1|9.6e-8381.77hypothetical protein Csa_7G398220 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000743Glyco_hydro_28
IPR011050Pectin_lyase_fold/virulence
IPR012334Pectin_lyas_fold
Vocabulary: Molecular Function
TermDefinition
GO:0004650polygalacturonase activity
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071555 cell wall organization
biological_process GO:0005982 starch metabolic process
biological_process GO:0005985 sucrose metabolic process
biological_process GO:0005975 carbohydrate metabolic process
cellular_component GO:0005576 extracellular region
molecular_function GO:0004650 polygalacturonase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa7G353000.1Csa7G353000.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000743Glycoside hydrolase, family 28PFAMPF00295Glyco_hydro_28coord: 115..207
score: 6.4
IPR011050Pectin lyase fold/virulence factorunknownSSF51126Pectin lyase-likecoord: 83..199
score: 2.83
IPR012334Pectin lyase foldGENE3DG3DSA:2.160.20.10coord: 82..200
score: 1.6
NoneNo IPR availablePANTHERPTHR31375FAMILY NOT NAMEDcoord: 19..205
score: 4.9
NoneNo IPR availablePANTHERPTHR31375:SF16SUBFAMILY NOT NAMEDcoord: 19..205
score: 4.9