Csa7G342790 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa7G342790
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Spindle and kinetochore-associated protein 1 homolog; contains IPR009829 (Protein of unknown function DUF1395)
Location	Chr7 : 12399462 .. 12400464 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGAAACTTATTGAAGCATCTCTGAAGCAGCAGAAGAGATTAGAAAGTATCTCCCTTCATGTTCCCACATATTATCAGATTCTGCCTGACAGAGTTTCTGCCTTGAACTTAAATACCAGGTAACTGATTTGGTTTAAATTTTATACTAGTTCTATGATCTGAACCGTAGCTTCAACATTTAATGTTATGGTATCATAGATGTGATTCATGAAAAAGTTCGATGGCTTTTTGTTTTCAGTCTTTGTTCAGAGGCCAAAGCATCTGGTACTGAATTGGGCTCGCGAGAGGCTGAGAATGTGATTTCAGTCTTACCTAAGGTCAGAATTTTGTTCCTTTCATCATGTTTACATTAAATGAATGCACTGTACATATTTCATTATAAACTAGCAATTTGGGCTGAAGTTAGCTGTTAAAATCTTGGTGAACCTAATAGCCAATAACTTCAGTGTTTACAGGATTAGACAGAACCAAGGAGGATGTGTGAGCGTTTGTTAGGTTCCCTGTTTTTATTTGGGTTTCGGTTGCTATTTCTTTTTGTAATTACCTTTGAGGTCTCATTTGCTCAATTGAAGTCATTTTTGTTTTAGTTGGTCCTTTTTAATTTTTCTTTTATCCTGTTGTATCCTTTCATTTTCTCTTGAAGATTCAGTACTTCGTAAAGAAAACTTGCTAGCTTAGATAAGGTTAATATTATGTTTCTATTTTTAATATTTCTCAGCACTTATTGGTTTTAATTAGCGCTATGCTCATTGAATGACAATTAGAGAGGAAATGAGATTATTGGGGTCCAGATAGAAACTCGAGTTGATGGATTTTGGTAAATTTAATATTTTGTTTATATTTTTAACACTTTCATGCCATGCTAAGAAAATTAGACTTCTCCCATAATTATTCATTAATGTAGAACTGACCTTTACCACGTCAATTTCAGGAAAAGAAAGTTTCCTCTCCTCCACTTTGGTACATAACCATCGATGAACTGAATTCACTATCCTCGTGA

mRNA sequence

ATGCAGAAACTTATTGAAGCATCTCTGAAGCAGCAGAAGAGATTAGAAAGTATCTCCCTTCATGTTCCCACATATTATCAGATTCTGCCTGACAGAGTTTCTGCCTTGAACTTAAATACCAGTCTTTGTTCAGAGGCCAAAGCATCTGGTACTGAATTGGGCTCGCGAGAGGCTGAGAATGTGATTTCAGTCTTACCTAAGGAAAAGAAAGTTTCCTCTCCTCCACTTTGGTACATAACCATCGATGAACTGAATTCACTATCCTCGTGA

Coding sequence (CDS)

ATGCAGAAACTTATTGAAGCATCTCTGAAGCAGCAGAAGAGATTAGAAAGTATCTCCCTTCATGTTCCCACATATTATCAGATTCTGCCTGACAGAGTTTCTGCCTTGAACTTAAATACCAGTCTTTGTTCAGAGGCCAAAGCATCTGGTACTGAATTGGGCTCGCGAGAGGCTGAGAATGTGATTTCAGTCTTACCTAAGGAAAAGAAAGTTTCCTCTCCTCCACTTTGGTACATAACCATCGATGAACTGAATTCACTATCCTCGTGA

Protein sequence

MQKLIEASLKQQKRLESISLHVPTYYQILPDRVSALNLNTSLCSEAKASGTELGSREAENVISVLPKEKKVSSPPLWYITIDELNSLSS*

Homology

[Close]

BLAST of Csa7G342790 vs. Swiss-Prot
Match: SKA1_ARATH (Spindle and kinetochore-associated protein 1 homolog OS=Arabidopsis thaliana GN=At3g60660 PE=2 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 7.5e-13
Identity = 42/94 (44.68%), Postives = 61/94 (64.89%), Query Frame = 1


Query: 2   QKLIEASLKQQKRLESISLHVPTYYQILPDRVSALNLNTSLC-----SEAKASGTELGSR 61
           +KLIEASLKQQ +L+ +S++ P+++   PD+ + LN + + C     ++     + L S 
Sbjct: 74  KKLIEASLKQQGKLQKMSIYAPSHF---PDKATMLNSDLNRCLLQENAKQYEQHSTLSSL 133

Query: 62  EAENVISVLPKEKKV-SSPPLWYITIDELNSLSS 90
           + +   +VLPKEKK   SPPLWYIT++ELNSLSS
Sbjct: 134 KFDEEAAVLPKEKKGRGSPPLWYITVEELNSLSS 164

[Close]

BLAST of Csa7G342790 vs. TrEMBL
Match: A0A0A0K9X4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G342790 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 1.0e-40
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1


Query: 1  MQKLIEASLKQQKRLESISLHVPTYYQILPDRVSALNLNTSLCSEAKASGTELGSREAEN 60
          MQKLIEASLKQQKRLESISLHVPTYYQILPDRVSALNLNTSLCSEAKASGTELGSREAEN
Sbjct: 1  MQKLIEASLKQQKRLESISLHVPTYYQILPDRVSALNLNTSLCSEAKASGTELGSREAEN 60

Query: 61 VISVLPKEKKVSSPPLWYITIDELNSLSS 90
          VISVLPKEKKVSSPPLWYITIDELNSLSS
Sbjct: 61 VISVLPKEKKVSSPPLWYITIDELNSLSS 89

[Close]

BLAST of Csa7G342790 vs. TrEMBL
Match: I3SEA4_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 7.5e-12
Identity = 47/92 (51.09%), Postives = 65/92 (70.65%), Query Frame = 1


Query: 2   QKLIEASLKQQKRLESISLHVPTYYQILPDRVSALNLNTSLCSEAKASGTELGSREA--- 61
           +KLI+ASL+QQK+L+++SLHVP  YQ +PD+++  NL TS C   + SG   GS EA   
Sbjct: 23  KKLIDASLRQQKKLQNMSLHVP--YQ-MPDKMAISNLETSRCLFPEFSGQVSGSFEALKL 82

Query: 62  ENVISVLPKEKK-VSSPPLWYITIDELNSLSS 90
           +   + LPKEKK   +PP+WY+T  EL+SLSS
Sbjct: 83  DEEPAALPKEKKGRGAPPMWYVTGSELDSLSS 111

[Close]

BLAST of Csa7G342790 vs. TrEMBL
Match: A0A067JXW1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14562 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.3e-11
Identity = 42/91 (46.15%), Postives = 67/91 (73.63%), Query Frame = 1


Query: 2   QKLIEASLKQQKRLESISLHVPTYYQILPDRVSALNLNTSLCSEAKASGTELG--SREAE 61
           +KLI ASL+QQK+L+++S+HVP +   LP+R++ LN++T+  ++ +    +LG  S ++E
Sbjct: 74  KKLIAASLQQQKKLQNMSIHVPLH---LPERMTLLNMDTNRSAQPEVPNQQLGFGSLKSE 133

Query: 62  NVISVLPKEKKV-SSPPLWYITIDELNSLSS 90
              + L KEKK  +SPPLWYI ++EL+SLSS
Sbjct: 134 EESAALSKEKKGRASPPLWYINVEELDSLSS 161

[Close]

BLAST of Csa7G342790 vs. TrEMBL
Match: B9RD75_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1610690 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.7e-11
Identity = 48/89 (53.93%), Postives = 59/89 (66.29%), Query Frame = 1


Query: 2   QKLIEASLKQQKRLESISLHVPTYYQILPDRVSALNL--NTSLCSEAKASGTELGSREAE 61
           +KLIE SL+QQK+L+S+S HV      LP R+ +LNL  N S+  EA     E GS + E
Sbjct: 74  KKLIEMSLRQQKKLQSMSSHV------LPHRMISLNLDANKSVPPEAPNQQNEFGSLKTE 133

Query: 62  NVISVLPKEKK-VSSPPLWYITIDELNSL 88
           N  + LPKEKK  + PPLWYIT DELNSL
Sbjct: 134 NEPAPLPKEKKGRAPPPLWYITADELNSL 156

[Close]

BLAST of Csa7G342790 vs. TrEMBL
Match: M5X3E3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009970mg PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.7e-11
Identity = 42/90 (46.67%), Postives = 63/90 (70.00%), Query Frame = 1


Query: 2   QKLIEASLKQQKRLESISLHVPTYYQILPDRVSALNLNTSLC--SEAKASGTELGSREAE 61
           +KLI+A++KQQK+L+ +S + P++   +P+R+S L L+T+ C   E     T  GS + E
Sbjct: 74  KKLIDAAVKQQKKLQDLSSYAPSH---IPERMSMLGLDTNRCLFPEGSQQNTGFGSLKLE 133

Query: 62  NVISVLPKEKKV-SSPPLWYITIDELNSLS 89
            V + LPKEKK  S+PPLW+IT +EL+SLS
Sbjct: 134 EVPAALPKEKKGRSTPPLWFITAEELDSLS 160

[Close]

BLAST of Csa7G342790 vs. TAIR10
Match: AT3G60660.1 (AT3G60660.1 unknown protein)

HSP 1 Score: 74.3 bits (181), Expect = 4.2e-14
Identity = 42/94 (44.68%), Postives = 61/94 (64.89%), Query Frame = 1


Query: 2   QKLIEASLKQQKRLESISLHVPTYYQILPDRVSALNLNTSLC-----SEAKASGTELGSR 61
           +KLIEASLKQQ +L+ +S++ P+++   PD+ + LN + + C     ++     + L S 
Sbjct: 74  KKLIEASLKQQGKLQKMSIYAPSHF---PDKATMLNSDLNRCLLQENAKQYEQHSTLSSL 133

Query: 62  EAENVISVLPKEKKV-SSPPLWYITIDELNSLSS 90
           + +   +VLPKEKK   SPPLWYIT++ELNSLSS
Sbjct: 134 KFDEEAAVLPKEKKGRGSPPLWYITVEELNSLSS 164

[Close]

BLAST of Csa7G342790 vs. NCBI nr
Match: gi|700189378|gb|KGN44611.1| (hypothetical protein Csa_7G342790 [Cucumis sativus])

HSP 1 Score: 173.7 bits (439), Expect = 1.4e-40
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 1


Query: 1  MQKLIEASLKQQKRLESISLHVPTYYQILPDRVSALNLNTSLCSEAKASGTELGSREAEN 60
          MQKLIEASLKQQKRLESISLHVPTYYQILPDRVSALNLNTSLCSEAKASGTELGSREAEN
Sbjct: 1  MQKLIEASLKQQKRLESISLHVPTYYQILPDRVSALNLNTSLCSEAKASGTELGSREAEN 60

Query: 61 VISVLPKEKKVSSPPLWYITIDELNSLSS 90
          VISVLPKEKKVSSPPLWYITIDELNSLSS
Sbjct: 61 VISVLPKEKKVSSPPLWYITIDELNSLSS 89

[Close]

BLAST of Csa7G342790 vs. NCBI nr
Match: gi|449443722|ref|XP_004139626.1| (PREDICTED: spindle and kinetochore-associated protein 1 homolog [Cucumis sativus])

HSP 1 Score: 170.2 bits (430), Expect = 1.6e-39
Identity = 87/88 (98.86%), Postives = 88/88 (100.00%), Query Frame = 1


Query: 2   QKLIEASLKQQKRLESISLHVPTYYQILPDRVSALNLNTSLCSEAKASGTELGSREAENV 61
           +KLIEASLKQQKRLESISLHVPTYYQILPDRVSALNLNTSLCSEAKASGTELGSREAENV
Sbjct: 74  KKLIEASLKQQKRLESISLHVPTYYQILPDRVSALNLNTSLCSEAKASGTELGSREAENV 133

Query: 62  ISVLPKEKKVSSPPLWYITIDELNSLSS 90
           ISVLPKEKKVSSPPLWYITIDELNSLSS
Sbjct: 134 ISVLPKEKKVSSPPLWYITIDELNSLSS 161

[Close]

BLAST of Csa7G342790 vs. NCBI nr
Match: gi|659116314|ref|XP_008458015.1| (PREDICTED: spindle and kinetochore-associated protein 1 homolog [Cucumis melo])

HSP 1 Score: 161.0 bits (406), Expect = 9.7e-37
Identity = 83/88 (94.32%), Postives = 86/88 (97.73%), Query Frame = 1


Query: 2   QKLIEASLKQQKRLESISLHVPTYYQILPDRVSALNLNTSLCSEAKASGTELGSREAENV 61
           +KLIEASLKQQKRLESISLHVPTYYQILP+RVSALNLNTSL SEAK SG+ELGSREAENV
Sbjct: 74  KKLIEASLKQQKRLESISLHVPTYYQILPERVSALNLNTSLGSEAKTSGSELGSREAENV 133

Query: 62  ISVLPKEKKVSSPPLWYITIDELNSLSS 90
           ISVLPKEKKVSSPPLWYITIDELNSLSS
Sbjct: 134 ISVLPKEKKVSSPPLWYITIDELNSLSS 161

[Close]

BLAST of Csa7G342790 vs. NCBI nr
Match: gi|694420217|ref|XP_009338027.1| (PREDICTED: spindle and kinetochore-associated protein 1 homolog [Pyrus x bretschneideri])

HSP 1 Score: 78.2 bits (191), Expect = 8.3e-12
Identity = 43/90 (47.78%), Postives = 64/90 (71.11%), Query Frame = 1


Query: 2   QKLIEASLKQQKRLESISLHVPTYYQILPDRVSALNLNTSLC--SEAKASGTELGSREAE 61
           +KL++A+LKQQK+L+ +S++VP++   +P+R+S LNL+T+ C   E     T  GS + E
Sbjct: 74  KKLVDAALKQQKKLQDMSVYVPSH---VPERMSMLNLDTNKCLFPEGSQQNTGFGSFKLE 133

Query: 62  NVISVLPKEKK-VSSPPLWYITIDELNSLS 89
              + LPKEKK  S PPLW+IT +EL+SLS
Sbjct: 134 EEPAALPKEKKGRSPPPLWFITAEELDSLS 160

[Close]

BLAST of Csa7G342790 vs. NCBI nr
Match: gi|388501060|gb|AFK38596.1| (unknown [Lotus japonicus])

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-11
Identity = 47/92 (51.09%), Postives = 65/92 (70.65%), Query Frame = 1


Query: 2   QKLIEASLKQQKRLESISLHVPTYYQILPDRVSALNLNTSLCSEAKASGTELGSREA--- 61
           +KLI+ASL+QQK+L+++SLHVP  YQ +PD+++  NL TS C   + SG   GS EA   
Sbjct: 23  KKLIDASLRQQKKLQNMSLHVP--YQ-MPDKMAISNLETSRCLFPEFSGQVSGSFEALKL 82

Query: 62  ENVISVLPKEKK-VSSPPLWYITIDELNSLSS 90
           +   + LPKEKK   +PP+WY+T  EL+SLSS
Sbjct: 83  DEEPAALPKEKKGRGAPPMWYVTGSELDSLSS 111

The following BLAST results are available for this feature:

BLAST of Csa7G342790 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SKA1_ARATH	7.5e-13	44.68	Spindle and kinetochore-associated protein 1 homolog OS=Arabidopsis thaliana GN=...	[more]

BLAST of Csa7G342790 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9X4_CUCSA	1.0e-40	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G342790 PE=4 SV=1	[more]
I3SEA4_LOTJA	7.5e-12	51.09	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]
A0A067JXW1_JATCU	1.3e-11	46.15	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14562 PE=4 SV=1	[more]
B9RD75_RICCO	1.7e-11	53.93	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1610690 PE=4 SV=1	[more]
M5X3E3_PRUPE	1.7e-11	46.67	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009970mg PE=4 SV=1	[more]

BLAST of Csa7G342790 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G60660.1	4.2e-14	44.68	unknown protein	[more]

BLAST of Csa7G342790 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700189378\|gb\|KGN44611.1\|	1.4e-40	100.00	hypothetical protein Csa_7G342790 [Cucumis sativus]	[more]
gi\|449443722\|ref\|XP_004139626.1\|	1.6e-39	98.86	PREDICTED: spindle and kinetochore-associated protein 1 homolog [Cucumis sativus...	[more]
gi\|659116314\|ref\|XP_008458015.1\|	9.7e-37	94.32	PREDICTED: spindle and kinetochore-associated protein 1 homolog [Cucumis melo]	[more]
gi\|694420217\|ref\|XP_009338027.1\|	8.3e-12	47.78	PREDICTED: spindle and kinetochore-associated protein 1 homolog [Pyrus x bretsch...	[more]
gi\|388501060\|gb\|AFK38596.1\|	1.1e-11	51.09	unknown [Lotus japonicus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009829	SKA1

Vocabulary: **Biological Process**
Term	Definition
GO:0007059	chromosome segregation
GO:0051301	cell division

Vocabulary: **Molecular Function**
Term	Definition
GO:0008017	microtubule binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051301	cell division
biological_process	GO:0007059	chromosome segregation
cellular_component	GO:0045298	tubulin complex
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008017	microtubule binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU111461	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa7G342790.1	Csa7G342790.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU111461	CU111461	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009829	Spindle and kinetochore-associated protein 1	PFAM	PF07160	DUF1395	coord: 2..89 score: 1.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa7G342790	CSPI07G14390	Wild cucumber (PI 183967)	cpicuB354
Csa7G342790	CsGy7G012970	Cucumber (Gy14) v2	cgybcuB323

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa7G342790	Watermelon (97103) v2	cuwmbB550
Csa7G342790	Watermelon (97103) v2	cuwmbB571
Csa7G342790	Wax gourd	cuwgoB705
Csa7G342790	Cucumber (Chinese Long) v2	cucuB132
Csa7G342790	Cucumber (Gy14) v1	cgycuB076
Csa7G342790	Cucurbita maxima (Rimu)	cmacuB384
Csa7G342790	Cucurbita maxima (Rimu)	cmacuB531
Csa7G342790	Cucurbita maxima (Rimu)	cmacuB647
Csa7G342790	Cucurbita maxima (Rimu)	cmacuB914
Csa7G342790	Cucurbita moschata (Rifu)	cmocuB374
Csa7G342790	Cucurbita moschata (Rifu)	cmocuB522
Csa7G342790	Cucurbita moschata (Rifu)	cmocuB900
Csa7G342790	Melon (DHL92) v3.5.1	cumeB523
Csa7G342790	Watermelon (Charleston Gray)	cuwcgB525
Csa7G342790	Watermelon (Charleston Gray)	cuwcgB565
Csa7G342790	Watermelon (97103) v1	cuwmB567
Csa7G342790	Watermelon (97103) v1	cuwmB587
Csa7G342790	Cucurbita pepo (Zucchini)	cpecuB157
Csa7G342790	Cucurbita pepo (Zucchini)	cpecuB337
Csa7G342790	Cucurbita pepo (Zucchini)	cpecuB769
Csa7G342790	Bottle gourd (USVL1VR-Ls)	culsiB503
Csa7G342790	Bottle gourd (USVL1VR-Ls)	culsiB526
Csa7G342790	Cucumber (Gy14) v2	cgybcuB152
Csa7G342790	Melon (DHL92) v3.6.1	cumedB502
Csa7G342790	Silver-seed gourd	carcuB0095