Csa7G339680 (gene) Cucumber (Chinese Long) v2

NameCsa7G339680
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
Description26S protease regulatory subunit, putative
LocationChr7 : 12275069 .. 12275457 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGATCTTGGCACCCAACTCCTGACGGTCACCCTACACGGCCAAGTGCAAGCTCCGTCTTCTAAAGCTTGAGCAAGTCAAGAACTATTTTCTCATGGAGGAGGAGTTTGTTACCAATCAAGAGTTGTTGAAGCCATAGGAGGAGAAAAATGAAGAAGATAGATATAAGGTCGACGACCCACGTGGCTCGCCGATGAGTGTTGGAAATTTGGAGGAGCCGATTGATGAGAATCATGCCATTGTGTCTTCATTTGTCGGTCTGAAGTACTATGTTGGGATCTTGTTGTTTGTCGATAAAGACCAACTCGAGCTAGGATGTGCCATTCTCATGCACAACAACGTAGGTTTTGTTATAGTTGTTAATTTGGCAAATGCTTCGTTCTTGTAA

mRNA sequence

ATGAGATCTTGGCACCCAACTCCTGACGGTCACCCTACACGGCCAAGTGCAAGCTCCGAGGAGAAAAATGAAGAAGATAGATATAAGGTCGACGACCCACGTGGCTCGCCGATGAGTGTTGGAAATTTGGAGGAGCCGATTGATGAGAATCATGCCATTGTGTCTTCATTTGTCGGTCTGAAGTACTATGTTGGGATCTTGTTGTTTGTCGATAAAGACCAACTCGAGCTAGGATGTGCCATTCTCATGCACAACAACGTAGGTTTTGTTATAGTTGTTAATTTGGCAAATGCTTCGTTCTTGTAA

Coding sequence (CDS)

ATGAGATCTTGGCACCCAACTCCTGACGGTCACCCTACACGGCCAAGTGCAAGCTCCGAGGAGAAAAATGAAGAAGATAGATATAAGGTCGACGACCCACGTGGCTCGCCGATGAGTGTTGGAAATTTGGAGGAGCCGATTGATGAGAATCATGCCATTGTGTCTTCATTTGTCGGTCTGAAGTACTATGTTGGGATCTTGTTGTTTGTCGATAAAGACCAACTCGAGCTAGGATGTGCCATTCTCATGCACAACAACGTAGGTTTTGTTATAGTTGTTAATTTGGCAAATGCTTCGTTCTTGTAA

Protein sequence

MRSWHPTPDGHPTRPSASSEEKNEEDRYKVDDPRGSPMSVGNLEEPIDENHAIVSSFVGLKYYVGILLFVDKDQLELGCAILMHNNVGFVIVVNLANASFL*
BLAST of Csa7G339680 vs. Swiss-Prot
Match: PRS4A_ARATH (26S proteasome regulatory subunit 4 homolog A OS=Arabidopsis thaliana GN=RPT2A PE=1 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 8.2e-24
Identity = 57/72 (79.17%), Postives = 59/72 (81.94%), Query Frame = 1

Query: 20  EEKNEEDRYKVDDPRGSPMSVGNLEEPIDENHAIVSSFVGLKYYVGILLFVDKDQLELGC 79
           EEK EEDR KVDD RG+PMSVGNLEE IDENHAIVSS VG +YYVGIL FVDKDQLE GC
Sbjct: 92  EEKAEEDRSKVDDLRGTPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGC 151

Query: 80  AILMHNNVGFVI 92
           +ILMHN V  V+
Sbjct: 152 SILMHNKVLSVV 163

BLAST of Csa7G339680 vs. Swiss-Prot
Match: PRS4B_ARATH (26S proteasome regulatory subunit 4 homolog B OS=Arabidopsis thaliana GN=RPT2B PE=1 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 8.2e-24
Identity = 57/72 (79.17%), Postives = 59/72 (81.94%), Query Frame = 1

Query: 20  EEKNEEDRYKVDDPRGSPMSVGNLEEPIDENHAIVSSFVGLKYYVGILLFVDKDQLELGC 79
           EEK EEDR KVDD RG+PMSVGNLEE IDENHAIVSS VG +YYVGIL FVDKDQLE GC
Sbjct: 92  EEKAEEDRSKVDDLRGTPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGC 151

Query: 80  AILMHNNVGFVI 92
           +ILMHN V  V+
Sbjct: 152 SILMHNKVLSVV 163

BLAST of Csa7G339680 vs. Swiss-Prot
Match: PRS4_ORYSJ (26S protease regulatory subunit 4 homolog OS=Oryza sativa subsp. japonica GN=TBP2 PE=2 SV=2)

HSP 1 Score: 107.1 bits (266), Expect = 1.2e-22
Identity = 54/73 (73.97%), Postives = 60/73 (82.19%), Query Frame = 1

Query: 19  SEEKNEEDRYKVDDPRGSPMSVGNLEEPIDENHAIVSSFVGLKYYVGILLFVDKDQLELG 78
           +E+K EEDR KVDD RG+PMSVG+LEE IDE+HAIVSS VG +YYVGIL FVDKDQLE G
Sbjct: 96  TEDKTEEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVGILSFVDKDQLEPG 155

Query: 79  CAILMHNNVGFVI 92
           C+ILMHN V  V+
Sbjct: 156 CSILMHNKVLSVV 168

BLAST of Csa7G339680 vs. Swiss-Prot
Match: PRS4_DROME (26S protease regulatory subunit 4 OS=Drosophila melanogaster GN=Rpt2 PE=1 SV=2)

HSP 1 Score: 100.1 bits (248), Expect = 1.4e-20
Identity = 49/74 (66.22%), Postives = 60/74 (81.08%), Query Frame = 1

Query: 20  EEKNEEDRYKVDDPRGSPMSVGNLEEPIDENHAIVSSFVGLKYYVGILLFVDKDQLELGC 79
           +EKNEE+R KVDD RG+PMSVGNLEE ID+NHAIVS+ VG ++YV IL FVDKDQLE GC
Sbjct: 88  DEKNEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGC 147

Query: 80  AILMHNNVGFVIVV 94
           ++L+++ V  V+ V
Sbjct: 148 SVLLNHKVHAVVGV 161

BLAST of Csa7G339680 vs. Swiss-Prot
Match: PRS4_RAT (26S protease regulatory subunit 4 OS=Rattus norvegicus GN=Psmc1 PE=2 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 7.9e-19
Identity = 48/74 (64.86%), Postives = 57/74 (77.03%), Query Frame = 1

Query: 20  EEKNEEDRYKVDDPRGSPMSVGNLEEPIDENHAIVSSFVGLKYYVGILLFVDKDQLELGC 79
           EEK EE+R KVDD RG+PMSVG LEE ID+NHAIVS+ VG ++YV IL FVDKD LE GC
Sbjct: 89  EEKQEEERSKVDDLRGTPMSVGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGC 148

Query: 80  AILMHNNVGFVIVV 94
           ++L+++ V  VI V
Sbjct: 149 SVLLNHKVHAVIGV 162

BLAST of Csa7G339680 vs. TrEMBL
Match: A0A0A0K9W2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G339680 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 1.1e-51
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1

Query: 1   MRSWHPTPDGHPTRPSASSEEKNEEDRYKVDDPRGSPMSVGNLEEPIDENHAIVSSFVGL 60
           MRSWHPTPDGHPTRPSASSEEKNEEDRYKVDDPRGSPMSVGNLEEPIDENHAIVSSFVGL
Sbjct: 1   MRSWHPTPDGHPTRPSASSEEKNEEDRYKVDDPRGSPMSVGNLEEPIDENHAIVSSFVGL 60

Query: 61  KYYVGILLFVDKDQLELGCAILMHNNVGFVIVVNLANASFL 102
           KYYVGILLFVDKDQLELGCAILMHNNVGFVIVVNLANASFL
Sbjct: 61  KYYVGILLFVDKDQLELGCAILMHNNVGFVIVVNLANASFL 101

BLAST of Csa7G339680 vs. TrEMBL
Match: A0A067L9D3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23036 PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 2.2e-23
Identity = 60/72 (83.33%), Postives = 62/72 (86.11%), Query Frame = 1

Query: 20  EEKNEEDRYKVDDPRGSPMSVGNLEEPIDENHAIVSSFVGLKYYVGILLFVDKDQLELGC 79
           EEKNEEDR KVDD RGSPMSVGNLEE IDENHAIVSS VG +YYVGIL FVDKDQLE GC
Sbjct: 85  EEKNEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGC 144

Query: 80  AILMHNNVGFVI 92
           AILMHN V  V+
Sbjct: 145 AILMHNKVLSVV 156

BLAST of Csa7G339680 vs. TrEMBL
Match: A0A0A0LH67_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G049870 PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 2.2e-23
Identity = 60/72 (83.33%), Postives = 62/72 (86.11%), Query Frame = 1

Query: 20  EEKNEEDRYKVDDPRGSPMSVGNLEEPIDENHAIVSSFVGLKYYVGILLFVDKDQLELGC 79
           EEKNEEDR KVDD RGSPMSVGNLEE IDENHAIVSS VG +YYVGIL FVDKDQLE GC
Sbjct: 96  EEKNEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGC 155

Query: 80  AILMHNNVGFVI 92
           AILMHN V  V+
Sbjct: 156 AILMHNKVLSVV 167

BLAST of Csa7G339680 vs. TrEMBL
Match: B9SJQ0_RICCO (26S protease regulatory subunit, putative OS=Ricinus communis GN=RCOM_1629040 PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 2.2e-23
Identity = 60/72 (83.33%), Postives = 62/72 (86.11%), Query Frame = 1

Query: 20  EEKNEEDRYKVDDPRGSPMSVGNLEEPIDENHAIVSSFVGLKYYVGILLFVDKDQLELGC 79
           EEKNEEDR KVDD RGSPMSVGNLEE IDENHAIVSS VG +YYVGIL FVDKDQLE GC
Sbjct: 92  EEKNEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGC 151

Query: 80  AILMHNNVGFVI 92
           AILMHN V  V+
Sbjct: 152 AILMHNKVLSVV 163

BLAST of Csa7G339680 vs. TrEMBL
Match: W1PHT9_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00019p00202640 PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 4.8e-23
Identity = 59/72 (81.94%), Postives = 62/72 (86.11%), Query Frame = 1

Query: 20  EEKNEEDRYKVDDPRGSPMSVGNLEEPIDENHAIVSSFVGLKYYVGILLFVDKDQLELGC 79
           E+KNEEDR KVDD RGSPMSVGNLEE IDENHAIVSS VG +YYVGIL FVDKDQLE GC
Sbjct: 93  EDKNEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGC 152

Query: 80  AILMHNNVGFVI 92
           AILMHN V  V+
Sbjct: 153 AILMHNKVLSVV 164

BLAST of Csa7G339680 vs. TAIR10
Match: AT2G20140.1 (AT2G20140.1 AAA-type ATPase family protein)

HSP 1 Score: 110.9 bits (276), Expect = 4.6e-25
Identity = 57/72 (79.17%), Postives = 59/72 (81.94%), Query Frame = 1

Query: 20  EEKNEEDRYKVDDPRGSPMSVGNLEEPIDENHAIVSSFVGLKYYVGILLFVDKDQLELGC 79
           EEK EEDR KVDD RG+PMSVGNLEE IDENHAIVSS VG +YYVGIL FVDKDQLE GC
Sbjct: 92  EEKAEEDRSKVDDLRGTPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGC 151

Query: 80  AILMHNNVGFVI 92
           +ILMHN V  V+
Sbjct: 152 SILMHNKVLSVV 163

BLAST of Csa7G339680 vs. TAIR10
Match: AT4G29040.1 (AT4G29040.1 regulatory particle AAA-ATPase 2A)

HSP 1 Score: 110.9 bits (276), Expect = 4.6e-25
Identity = 57/72 (79.17%), Postives = 59/72 (81.94%), Query Frame = 1

Query: 20  EEKNEEDRYKVDDPRGSPMSVGNLEEPIDENHAIVSSFVGLKYYVGILLFVDKDQLELGC 79
           EEK EEDR KVDD RG+PMSVGNLEE IDENHAIVSS VG +YYVGIL FVDKDQLE GC
Sbjct: 92  EEKAEEDRSKVDDLRGTPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGC 151

Query: 80  AILMHNNVGFVI 92
           +ILMHN V  V+
Sbjct: 152 SILMHNKVLSVV 163

BLAST of Csa7G339680 vs. NCBI nr
Match: gi|700189363|gb|KGN44596.1| (hypothetical protein Csa_7G339680 [Cucumis sativus])

HSP 1 Score: 210.3 bits (534), Expect = 1.6e-51
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1

Query: 1   MRSWHPTPDGHPTRPSASSEEKNEEDRYKVDDPRGSPMSVGNLEEPIDENHAIVSSFVGL 60
           MRSWHPTPDGHPTRPSASSEEKNEEDRYKVDDPRGSPMSVGNLEEPIDENHAIVSSFVGL
Sbjct: 1   MRSWHPTPDGHPTRPSASSEEKNEEDRYKVDDPRGSPMSVGNLEEPIDENHAIVSSFVGL 60

Query: 61  KYYVGILLFVDKDQLELGCAILMHNNVGFVIVVNLANASFL 102
           KYYVGILLFVDKDQLELGCAILMHNNVGFVIVVNLANASFL
Sbjct: 61  KYYVGILLFVDKDQLELGCAILMHNNVGFVIVVNLANASFL 101

BLAST of Csa7G339680 vs. NCBI nr
Match: gi|643737787|gb|KDP43828.1| (hypothetical protein JCGZ_23036 [Jatropha curcas])

HSP 1 Score: 116.3 bits (290), Expect = 3.1e-23
Identity = 60/72 (83.33%), Postives = 62/72 (86.11%), Query Frame = 1

Query: 20  EEKNEEDRYKVDDPRGSPMSVGNLEEPIDENHAIVSSFVGLKYYVGILLFVDKDQLELGC 79
           EEKNEEDR KVDD RGSPMSVGNLEE IDENHAIVSS VG +YYVGIL FVDKDQLE GC
Sbjct: 85  EEKNEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGC 144

Query: 80  AILMHNNVGFVI 92
           AILMHN V  V+
Sbjct: 145 AILMHNKVLSVV 156

BLAST of Csa7G339680 vs. NCBI nr
Match: gi|449462685|ref|XP_004149071.1| (PREDICTED: 26S proteasome regulatory subunit 4 homolog B [Cucumis sativus])

HSP 1 Score: 116.3 bits (290), Expect = 3.1e-23
Identity = 60/72 (83.33%), Postives = 62/72 (86.11%), Query Frame = 1

Query: 20  EEKNEEDRYKVDDPRGSPMSVGNLEEPIDENHAIVSSFVGLKYYVGILLFVDKDQLELGC 79
           EEKNEEDR KVDD RGSPMSVGNLEE IDENHAIVSS VG +YYVGIL FVDKDQLE GC
Sbjct: 96  EEKNEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGC 155

Query: 80  AILMHNNVGFVI 92
           AILMHN V  V+
Sbjct: 156 AILMHNKVLSVV 167

BLAST of Csa7G339680 vs. NCBI nr
Match: gi|255570523|ref|XP_002526219.1| (PREDICTED: 26S proteasome regulatory subunit 4 homolog B [Ricinus communis])

HSP 1 Score: 116.3 bits (290), Expect = 3.1e-23
Identity = 60/72 (83.33%), Postives = 62/72 (86.11%), Query Frame = 1

Query: 20  EEKNEEDRYKVDDPRGSPMSVGNLEEPIDENHAIVSSFVGLKYYVGILLFVDKDQLELGC 79
           EEKNEEDR KVDD RGSPMSVGNLEE IDENHAIVSS VG +YYVGIL FVDKDQLE GC
Sbjct: 92  EEKNEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGC 151

Query: 80  AILMHNNVGFVI 92
           AILMHN V  V+
Sbjct: 152 AILMHNKVLSVV 163

BLAST of Csa7G339680 vs. NCBI nr
Match: gi|802555210|ref|XP_012065309.1| (PREDICTED: 26S proteasome regulatory subunit 4 homolog B-like isoform X1 [Jatropha curcas])

HSP 1 Score: 116.3 bits (290), Expect = 3.1e-23
Identity = 60/72 (83.33%), Postives = 62/72 (86.11%), Query Frame = 1

Query: 20  EEKNEEDRYKVDDPRGSPMSVGNLEEPIDENHAIVSSFVGLKYYVGILLFVDKDQLELGC 79
           EEKNEEDR KVDD RGSPMSVGNLEE IDENHAIVSS VG +YYVGIL FVDKDQLE GC
Sbjct: 92  EEKNEEDRSKVDDLRGSPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQLEPGC 151

Query: 80  AILMHNNVGFVI 92
           AILMHN V  V+
Sbjct: 152 AILMHNKVLSVV 163

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PRS4A_ARATH8.2e-2479.1726S proteasome regulatory subunit 4 homolog A OS=Arabidopsis thaliana GN=RPT2A P... [more]
PRS4B_ARATH8.2e-2479.1726S proteasome regulatory subunit 4 homolog B OS=Arabidopsis thaliana GN=RPT2B P... [more]
PRS4_ORYSJ1.2e-2273.9726S protease regulatory subunit 4 homolog OS=Oryza sativa subsp. japonica GN=TBP... [more]
PRS4_DROME1.4e-2066.2226S protease regulatory subunit 4 OS=Drosophila melanogaster GN=Rpt2 PE=1 SV=2[more]
PRS4_RAT7.9e-1964.8626S protease regulatory subunit 4 OS=Rattus norvegicus GN=Psmc1 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0K9W2_CUCSA1.1e-51100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G339680 PE=4 SV=1[more]
A0A067L9D3_JATCU2.2e-2383.33Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23036 PE=3 SV=1[more]
A0A0A0LH67_CUCSA2.2e-2383.33Uncharacterized protein OS=Cucumis sativus GN=Csa_2G049870 PE=3 SV=1[more]
B9SJQ0_RICCO2.2e-2383.3326S protease regulatory subunit, putative OS=Ricinus communis GN=RCOM_1629040 PE... [more]
W1PHT9_AMBTC4.8e-2381.94Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00019p00202640 PE=3 SV=... [more]
Match NameE-valueIdentityDescription
AT2G20140.14.6e-2579.17 AAA-type ATPase family protein[more]
AT4G29040.14.6e-2579.17 regulatory particle AAA-ATPase 2A[more]
Match NameE-valueIdentityDescription
gi|700189363|gb|KGN44596.1|1.6e-51100.00hypothetical protein Csa_7G339680 [Cucumis sativus][more]
gi|643737787|gb|KDP43828.1|3.1e-2383.33hypothetical protein JCGZ_23036 [Jatropha curcas][more]
gi|449462685|ref|XP_004149071.1|3.1e-2383.33PREDICTED: 26S proteasome regulatory subunit 4 homolog B [Cucumis sativus][more]
gi|255570523|ref|XP_002526219.1|3.1e-2383.33PREDICTED: 26S proteasome regulatory subunit 4 homolog B [Ricinus communis][more]
gi|802555210|ref|XP_012065309.1|3.1e-2383.33PREDICTED: 26S proteasome regulatory subunit 4 homolog B-like isoform X1 [Jatrop... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030163 protein catabolic process
biological_process GO:0006508 proteolysis
cellular_component GO:0005737 cytoplasm
cellular_component GO:0000502 proteasome complex
molecular_function GO:0005524 ATP binding
molecular_function GO:0008568 microtubule-severing ATPase activity
molecular_function GO:0008233 peptidase activity
molecular_function GO:0016787 hydrolase activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa7G339680.1Csa7G339680.1mRNA


Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR2307326S PROTEASE REGULATORY SUBUNITcoord: 20..93
score: 1.9
NoneNo IPR availablePANTHERPTHR23073:SF2426S PROTEASE REGULATORY SUBUNIT 4coord: 20..93
score: 1.9