Csa7G336550 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa7G336550
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr7 : 12047043 .. 12047351 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTGGCGCATGATAGGGTCATGGAGAAGGTTGTACGCACCGGCCTTTCAAGGGGTTGCTAGGGCATGTGGTAATCTCCCTTGGTCATGTCATGGTTGCATACCTTTGTCACATTCCTCTCCCTTGCGCACACTGACCCTATCGCATAGCCTTTACGTTGTGCTTGGCCTTTTGTCACGCATGGCATCTTGTCGCGCACATGCCTGGCCGCATAGATGTGTGTTGGGCTTGTCTTTGCGTAGCTCATGCCTTAAGGCCACCTGTGTGCGCCTCACTTCACAAAATGTTCAATGCCTTGACGCCTAA

mRNA sequence

ATGGGTTGGCGCATGATAGGGTCATGGAGAAGGTTGTACGCACCGGCCTTTCAAGGGGTTGCTAGGGCATGTGGTAATCTCCCTTGGTCATGTCATGGTTGCATACCTTTGTCACATTCCTCTCCCTTGCGCACACTGACCCTATCGCATAGCCTTTACGTTGTGCTTGGCCTTTTGTCACGCATGGCATCTTGTCGCGCACATGCCTGGCCGCATAGATGTGTGTTGGGCTTGTCTTTGCGTAGCTCATGCCTTAAGGCCACCTGTGTGCGCCTCACTTCACAAAATGTTCAATGCCTTGACGCCTAA

Coding sequence (CDS)

ATGGGTTGGCGCATGATAGGGTCATGGAGAAGGTTGTACGCACCGGCCTTTCAAGGGGTTGCTAGGGCATGTGGTAATCTCCCTTGGTCATGTCATGGTTGCATACCTTTGTCACATTCCTCTCCCTTGCGCACACTGACCCTATCGCATAGCCTTTACGTTGTGCTTGGCCTTTTGTCACGCATGGCATCTTGTCGCGCACATGCCTGGCCGCATAGATGTGTGTTGGGCTTGTCTTTGCGTAGCTCATGCCTTAAGGCCACCTGTGTGCGCCTCACTTCACAAAATGTTCAATGCCTTGACGCCTAA

Protein sequence

MGWRMIGSWRRLYAPAFQGVARACGNLPWSCHGCIPLSHSSPLRTLTLSHSLYVVLGLLSRMASCRAHAWPHRCVLGLSLRSSCLKATCVRLTSQNVQCLDA*

Homology

[Close]

BLAST of Csa7G336550 vs. TrEMBL
Match: A0A0A0K9U8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G336550 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 1.1e-54
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1


Query: 1   MGWRMIGSWRRLYAPAFQGVARACGNLPWSCHGCIPLSHSSPLRTLTLSHSLYVVLGLLS 60
           MGWRMIGSWRRLYAPAFQGVARACGNLPWSCHGCIPLSHSSPLRTLTLSHSLYVVLGLLS
Sbjct: 1   MGWRMIGSWRRLYAPAFQGVARACGNLPWSCHGCIPLSHSSPLRTLTLSHSLYVVLGLLS 60

Query: 61  RMASCRAHAWPHRCVLGLSLRSSCLKATCVRLTSQNVQCLDA 103
           RMASCRAHAWPHRCVLGLSLRSSCLKATCVRLTSQNVQCLDA
Sbjct: 61  RMASCRAHAWPHRCVLGLSLRSSCLKATCVRLTSQNVQCLDA 102

[Close]

BLAST of Csa7G336550 vs. NCBI nr
Match: gi|700189343|gb|KGN44576.1| (hypothetical protein Csa_7G336550 [Cucumis sativus])

HSP 1 Score: 220.3 bits (560), Expect = 1.5e-54
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1


Query: 1   MGWRMIGSWRRLYAPAFQGVARACGNLPWSCHGCIPLSHSSPLRTLTLSHSLYVVLGLLS 60
           MGWRMIGSWRRLYAPAFQGVARACGNLPWSCHGCIPLSHSSPLRTLTLSHSLYVVLGLLS
Sbjct: 1   MGWRMIGSWRRLYAPAFQGVARACGNLPWSCHGCIPLSHSSPLRTLTLSHSLYVVLGLLS 60

Query: 61  RMASCRAHAWPHRCVLGLSLRSSCLKATCVRLTSQNVQCLDA 103
           RMASCRAHAWPHRCVLGLSLRSSCLKATCVRLTSQNVQCLDA
Sbjct: 61  RMASCRAHAWPHRCVLGLSLRSSCLKATCVRLTSQNVQCLDA 102

The following BLAST results are available for this feature:

BLAST of Csa7G336550 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9U8_CUCSA	1.1e-54	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G336550 PE=4 SV=1	[more]

BLAST of Csa7G336550 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700189343\|gb\|KGN44576.1\|	1.5e-54	100.00	hypothetical protein Csa_7G336550 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa7G336550.1	Csa7G336550.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa7G336550	CSPI07G14000	Wild cucumber (PI 183967)	cpicuB354

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa7G336550	Wax gourd	cuwgoB695
Csa7G336550	Cucumber (Chinese Long) v2	cucuB132
Csa7G336550	Cucumber (Gy14) v1	cgycuB076
Csa7G336550	Cucurbita maxima (Rimu)	cmacuB384
Csa7G336550	Cucurbita maxima (Rimu)	cmacuB531
Csa7G336550	Cucurbita maxima (Rimu)	cmacuB647
Csa7G336550	Cucurbita maxima (Rimu)	cmacuB916
Csa7G336550	Cucurbita moschata (Rifu)	cmocuB374
Csa7G336550	Cucurbita moschata (Rifu)	cmocuB522
Csa7G336550	Cucurbita moschata (Rifu)	cmocuB902
Csa7G336550	Melon (DHL92) v3.5.1	cumeB523
Csa7G336550	Melon (DHL92) v3.5.1	cumeB543
Csa7G336550	Watermelon (Charleston Gray)	cuwcgB525
Csa7G336550	Watermelon (Charleston Gray)	cuwcgB565
Csa7G336550	Watermelon (97103) v1	cuwmB567
Csa7G336550	Watermelon (97103) v1	cuwmB587
Csa7G336550	Cucurbita pepo (Zucchini)	cpecuB157
Csa7G336550	Cucurbita pepo (Zucchini)	cpecuB340
Csa7G336550	Cucurbita pepo (Zucchini)	cpecuB769
Csa7G336550	Bottle gourd (USVL1VR-Ls)	culsiB503
Csa7G336550	Bottle gourd (USVL1VR-Ls)	culsiB526
Csa7G336550	Cucumber (Gy14) v2	cgybcuB152
Csa7G336550	Cucumber (Gy14) v2	cgybcuB323
Csa7G336550	Melon (DHL92) v3.6.1	cumedB502
Csa7G336550	Melon (DHL92) v3.6.1	cumedB520
Csa7G336550	Silver-seed gourd	carcuB0096
Csa7G336550	Silver-seed gourd	carcuB0458
Csa7G336550	Watermelon (97103) v2	cuwmbB550
Csa7G336550	Watermelon (97103) v2	cuwmbB571