Csa7G336440 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa7G336440
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr7 : 11913281 .. 11914017 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTTGCGTTCAAACCCTACTGCAACCCTCTCTCTTCTTCTTTTCTCCTCTTCCTTCTTCTTCCCTCTCTTTGCCTCCGTTCAGGTATTCATCTTACATTTCTCTTCTCTTTTGTTTTTTTATGGCGTTCTTAATGGGGTTTGATTTTTATTGCTTCTTTGGTGTTTTTCAGGTGTATTCTGCGGAAGTGGAGAAAGATGACTTGGATGGACCTAAAGATCTCGGTCGATGTAGCAAGGTCAGTACAATTCCTTGTCGGCCATGGCTAGAGGTTGGTTTGGGGTTATATTGAGATTGAGATCTTTGTGCTTTTTGACTTAATAGTTTTCCTTCTTGTACATTGTTAATAGAACTAACTATTGTCTATTGAGATATACTCTTGAGCTTTCAATACCTTCTACTACCTGCTTGTGTATGAAAATAAAAAAAACCAATTGTAATGCCGGGGGGACTGTGAGGAAGATGGTAATGATTTTACAAGGTGGTGCTGGTTTTGTTTTTGGAGAACTTGAAGAAGGCCAACTGACTTGGGTTTAGAATTATCCGACTTGAAGAAAAATCAAACTAGCGGAAGCGTTGAAGCCTGGGTCTAAACCTCGCACTTGTTTCATTCTAGCCTAAGAAAGGAAGGAAGGAAGAACGCGCCTGCGAATTCAAATGAAAAAGAGGTACCTGAGGATCTAAGACGGCCAGAAACGGGCGGTTTGGGGATTGTGGGAGTGGAAGAGGAATAG

mRNA sequence

ATGGGTTTGCGTTCAAACCCTACTGCAACCCTCTCTCTTCTTCTTTTCTCCTCTTCCTTCTTCTTCCCTCTCTTTGCCTCCGTTCAGGTGTATTCTGCGGAAGTGGAGAAAGATGACTTGGATGGACCTAAAGATCTCGGTCGATGTAGCAAGTTTTCCTTCTTGTACATTGTTAATAGAACTAACTATTGTCTATTGAGATATACTCTTGAGCTTTCAATACCTTCTACTACCTGCTTGTGTATGAAAATAAAAAAAACCAATTGTAATGCCGGGGGGACTGTGAGGAAGATGGTAATGATTTTACAAGGTGGTGCTGGTTTTGTTTTTGGAGAACTTGAAGAAGGCCAACTGACTTGGGAAGGAAGGAAGAACGCGCCTGCGAATTCAAATGAAAAAGAGGTACCTGAGGATCTAAGACGGCCAGAAACGGGCGGTTTGGGGATTGTGGGAGTGGAAGAGGAATAG

Coding sequence (CDS)

ATGGGTTTGCGTTCAAACCCTACTGCAACCCTCTCTCTTCTTCTTTTCTCCTCTTCCTTCTTCTTCCCTCTCTTTGCCTCCGTTCAGGTGTATTCTGCGGAAGTGGAGAAAGATGACTTGGATGGACCTAAAGATCTCGGTCGATGTAGCAAGTTTTCCTTCTTGTACATTGTTAATAGAACTAACTATTGTCTATTGAGATATACTCTTGAGCTTTCAATACCTTCTACTACCTGCTTGTGTATGAAAATAAAAAAAACCAATTGTAATGCCGGGGGGACTGTGAGGAAGATGGTAATGATTTTACAAGGTGGTGCTGGTTTTGTTTTTGGAGAACTTGAAGAAGGCCAACTGACTTGGGAAGGAAGGAAGAACGCGCCTGCGAATTCAAATGAAAAAGAGGTACCTGAGGATCTAAGACGGCCAGAAACGGGCGGTTTGGGGATTGTGGGAGTGGAAGAGGAATAG

Protein sequence

MGLRSNPTATLSLLLFSSSFFFPLFASVQVYSAEVEKDDLDGPKDLGRCSKFSFLYIVNRTNYCLLRYTLELSIPSTTCLCMKIKKTNCNAGGTVRKMVMILQGGAGFVFGELEEGQLTWEGRKNAPANSNEKEVPEDLRRPETGGLGIVGVEEE*
Homology
[Close]
BLAST of Csa7G336440 vs. TrEMBL
Match: A0A0A0K4H3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G336440 PE=4 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 3.7e-83
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 1 

Query: 1   MGLRSNPTATLSLLLFSSSFFFPLFASVQVYSAEVEKDDLDGPKDLGRCSKFSFLYIVNR 60
           MGLRSNPTATLSLLLFSSSFFFPLFASVQVYSAEVEKDDLDGPKDLGRCSKFSFLYIVNR
Sbjct: 1   MGLRSNPTATLSLLLFSSSFFFPLFASVQVYSAEVEKDDLDGPKDLGRCSKFSFLYIVNR 60

Query: 61  TNYCLLRYTLELSIPSTTCLCMKIKKTNCNAGGTVRKMVMILQGGAGFVFGELEEGQLTW 120
           TNYCLLRYTLELSIPSTTCLCMKIKKTNCNAGGTVRKMVMILQGGAGFVFGELEEGQLTW
Sbjct: 61  TNYCLLRYTLELSIPSTTCLCMKIKKTNCNAGGTVRKMVMILQGGAGFVFGELEEGQLTW 120

Query: 121 EGRKNAPANSNEKEVPEDLRRPETGGLGIVGVEEE 156
           EGRKNAPANSNEKEVPEDLRRPETGGLGIVGVEEE
Sbjct: 121 EGRKNAPANSNEKEVPEDLRRPETGGLGIVGVEEE 155

[Close]
BLAST of Csa7G336440 vs. TrEMBL
Match: A0A0A0LMQ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G074220 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 5.0e-11
Identity = 44/59 (74.58%), Postives = 46/59 (77.97%), Query Frame = 1 

Query: 1  MGLRSNPTATLSLLLFSSSF-----FFPLFASVQVYSAEVEKDDLDGPKDLGRCSKFSF 55
          MGLRSNPTATLS   FS+SF     F  LFAS QVYSAEVEKDDLDGPKDLGR SK S+
Sbjct: 1  MGLRSNPTATLS---FSASFLLFLLFLSLFASHQVYSAEVEKDDLDGPKDLGRRSKMSW 56

[Close]
BLAST of Csa7G336440 vs. NCBI nr
Match: gi|700189332|gb|KGN44565.1| (hypothetical protein Csa_7G336440 [Cucumis sativus])

HSP 1 Score: 315.5 bits (807), Expect = 5.3e-83
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 1 

Query: 1   MGLRSNPTATLSLLLFSSSFFFPLFASVQVYSAEVEKDDLDGPKDLGRCSKFSFLYIVNR 60
           MGLRSNPTATLSLLLFSSSFFFPLFASVQVYSAEVEKDDLDGPKDLGRCSKFSFLYIVNR
Sbjct: 1   MGLRSNPTATLSLLLFSSSFFFPLFASVQVYSAEVEKDDLDGPKDLGRCSKFSFLYIVNR 60

Query: 61  TNYCLLRYTLELSIPSTTCLCMKIKKTNCNAGGTVRKMVMILQGGAGFVFGELEEGQLTW 120
           TNYCLLRYTLELSIPSTTCLCMKIKKTNCNAGGTVRKMVMILQGGAGFVFGELEEGQLTW
Sbjct: 61  TNYCLLRYTLELSIPSTTCLCMKIKKTNCNAGGTVRKMVMILQGGAGFVFGELEEGQLTW 120

Query: 121 EGRKNAPANSNEKEVPEDLRRPETGGLGIVGVEEE 156
           EGRKNAPANSNEKEVPEDLRRPETGGLGIVGVEEE
Sbjct: 121 EGRKNAPANSNEKEVPEDLRRPETGGLGIVGVEEE 155

[Close]
BLAST of Csa7G336440 vs. NCBI nr
Match: gi|778667866|ref|XP_011648996.1| (PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g23330 [Cucumis sativus])

HSP 1 Score: 75.9 bits (185), Expect = 7.1e-11
Identity = 44/59 (74.58%), Postives = 46/59 (77.97%), Query Frame = 1 

Query: 1  MGLRSNPTATLSLLLFSSSF-----FFPLFASVQVYSAEVEKDDLDGPKDLGRCSKFSF 55
          MGLRSNPTATLS   FS+SF     F  LFAS QVYSAEVEKDDLDGPKDLGR SK S+
Sbjct: 1  MGLRSNPTATLS---FSASFLLFLLFLSLFASHQVYSAEVEKDDLDGPKDLGRRSKMSW 56

[Close]
BLAST of Csa7G336440 vs. NCBI nr
Match: gi|700206142|gb|KGN61261.1| (hypothetical protein Csa_2G074220 [Cucumis sativus])

HSP 1 Score: 75.9 bits (185), Expect = 7.1e-11
Identity = 44/59 (74.58%), Postives = 46/59 (77.97%), Query Frame = 1 

Query: 1  MGLRSNPTATLSLLLFSSSF-----FFPLFASVQVYSAEVEKDDLDGPKDLGRCSKFSF 55
          MGLRSNPTATLS   FS+SF     F  LFAS QVYSAEVEKDDLDGPKDLGR SK S+
Sbjct: 1  MGLRSNPTATLS---FSASFLLFLLFLSLFASHQVYSAEVEKDDLDGPKDLGRRSKMSW 56

[Close]
BLAST of Csa7G336440 vs. NCBI nr
Match: gi|659082472|ref|XP_008441858.1| (PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At3g23330 [Cucumis melo])

HSP 1 Score: 70.5 bits (171), Expect = 3.0e-09
Identity = 40/59 (67.80%), Postives = 43/59 (72.88%), Query Frame = 1 

Query: 1  MGLRSNPTATLSLLLFSSSFFF-----PLFASVQVYSAEVEKDDLDGPKDLGRCSKFSF 55
          MGLRSNPT TLS   FS SF        LFAS+QVYSAE EKD+LDGPKDLGR SK S+
Sbjct: 1  MGLRSNPTTTLS---FSPSFLLFLLLLSLFASIQVYSAEAEKDELDGPKDLGRRSKISW 56

The following BLAST results are available for this feature:
BLAST of Csa7G336440 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K4H3_CUCSA3.7e-83100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G336440 PE=4 SV=1[more]
A0A0A0LMQ4_CUCSA5.0e-1174.58Uncharacterized protein OS=Cucumis sativus GN=Csa_2G074220 PE=4 SV=1[more]
BLAST of Csa7G336440 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700189332|gb|KGN44565.1|5.3e-83100.00hypothetical protein Csa_7G336440 [Cucumis sativus][more]
gi|778667866|ref|XP_011648996.1|7.1e-1174.58PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing pro... [more]
gi|700206142|gb|KGN61261.1|7.1e-1174.58hypothetical protein Csa_2G074220 [Cucumis sativus][more]
gi|659082472|ref|XP_008441858.1|3.0e-0967.80PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing pro... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa7G336440.1Csa7G336440.1mRNA