Csa7G330380 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa7G330380
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr7 : 11716328 .. 11716614 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGAAGCTCCTTCGCTTCTCTCTCTATGCATCGCCCTAGTCAGAGACGAGATTCTTCAAAGTAATCATCTCCATACTTCTTCTATATCTTATACTCCATTCCTACTCCCGATTCGTTTCTCTGCCCTGTTTTCTTAATTCGTTGTTCTTTTTTACTTTCAGGGGATGACGTTCCACCGGCTCTCTATGACCTTCCTCCTCACTTGTTGGATACCCTGGCATTGCGGCTGCCGCCCTTGGCTTTACGCAATTTACAATCTGGAATGTACGTTTTCCCTCCCTAA

mRNA sequence

ATGGCGGAAGCTCCTTCGCTTCTCTCTCTATGCATCGCCCTAGTCAGAGACGAGATTCTTCAAAGGGATGACGTTCCACCGGCTCTCTATGACCTTCCTCCTCACTTGTTGGATACCCTGGCATTGCGGCTGCCGCCCTTGGCTTTACGCAATTTACAATCTGGAATGTACGTTTTCCCTCCCTAA

Coding sequence (CDS)

ATGGCGGAAGCTCCTTCGCTTCTCTCTCTATGCATCGCCCTAGTCAGAGACGAGATTCTTCAAAGGGATGACGTTCCACCGGCTCTCTATGACCTTCCTCCTCACTTGTTGGATACCCTGGCATTGCGGCTGCCGCCCTTGGCTTTACGCAATTTACAATCTGGAATGTACGTTTTCCCTCCCTAA

Protein sequence

MAEAPSLLSLCIALVRDEILQRDDVPPALYDLPPHLLDTLALRLPPLALRNLQSGMYVFPP*

Homology

[Close]

BLAST of Csa7G330380 vs. TrEMBL
Match: A0A0A0K6N3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G330380 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 2.8e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1


Query: 1  MAEAPSLLSLCIALVRDEILQRDDVPPALYDLPPHLLDTLALRLPPLALRNLQSGMYVFP 60
          MAEAPSLLSLCIALVRDEILQRDDVPPALYDLPPHLLDTLALRLPPLALRNLQSGMYVFP
Sbjct: 1  MAEAPSLLSLCIALVRDEILQRDDVPPALYDLPPHLLDTLALRLPPLALRNLQSGMYVFP 60

Query: 61 P 62
          P
Sbjct: 61 P 61

[Close]

BLAST of Csa7G330380 vs. TrEMBL
Match: W9QPE8_9ROSA (Ribonuclease inhibitor OS=Morus notabilis GN=L484_015926 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 7.7e-08
Identity = 29/56 (51.79%), Postives = 40/56 (71.43%), Query Frame = 1


Query: 1  MAEAPSLLSLCIALVRDEILQRDDVPPALYDLPPHLLDTLALRLPPLALRNLQSGM 57
          M EAPSL+SLC+  V++E+ + DD+   +YDLP +L D L L+LPPL L+ LQ  M
Sbjct: 1  MREAPSLISLCLEAVKNELFRGDDILSVVYDLPSYLFDILVLQLPPLPLQKLQMAM 56

[Close]

BLAST of Csa7G330380 vs. TrEMBL
Match: A0A067JRC0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17590 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 6.6e-07
Identity = 28/56 (50.00%), Postives = 39/56 (69.64%), Query Frame = 1


Query: 1  MAEAPSLLSLCIALVRDEILQRDDVPPALYDLPPHLLDTLALRLPPLALRNLQSGM 57
          MA+ PSL+SL +  ++ E+L+ DD+ P +Y+LP HL D L   LPPLAL  LQ+ M
Sbjct: 1  MAKVPSLISLVMEAIKRELLRGDDILPDVYELPSHLFDVLVTMLPPLALHKLQAQM 56

[Close]

BLAST of Csa7G330380 vs. TrEMBL
Match: A0A0R0KS78_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_03G169900 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 8.6e-07
Identity = 33/53 (62.26%), Postives = 40/53 (75.47%), Query Frame = 1


Query: 1  MAEAP-SLLSLCIALVRDEILQR--DDVPPALYDLPPHLLDTLALRLPPLALR 51
          MAEAP SLLS+CI  +  ++L+   DD+ P +YDLP HLLDTL  RLPPLALR
Sbjct: 1  MAEAPPSLLSVCIDALTQQLLRPCDDDLLPCIYDLPSHLLDTLITRLPPLALR 53

[Close]

BLAST of Csa7G330380 vs. TrEMBL
Match: K7KFL9_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_03G169900 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 8.6e-07
Identity = 33/53 (62.26%), Postives = 40/53 (75.47%), Query Frame = 1


Query: 1  MAEAP-SLLSLCIALVRDEILQR--DDVPPALYDLPPHLLDTLALRLPPLALR 51
          MAEAP SLLS+CI  +  ++L+   DD+ P +YDLP HLLDTL  RLPPLALR
Sbjct: 1  MAEAPPSLLSVCIDALTQQLLRPCDDDLLPCIYDLPSHLLDTLITRLPPLALR 53

[Close]

BLAST of Csa7G330380 vs. TAIR10
Match: AT2G20210.1 (AT2G20210.1 RNI-like superfamily protein)

HSP 1 Score: 51.6 bits (122), Expect = 2.0e-07
Identity = 25/56 (44.64%), Postives = 34/56 (60.71%), Query Frame = 1


Query: 1  MAEAPSLLSLCIALVRDEILQRDDVPPALYDLPPHLLDTLALRLPPLALRNLQSGM 57
          M +APSL  LCI  ++ ++L+ D+  P LY+LP  LLD +   LP LAL+  Q+ M
Sbjct: 1  MTKAPSLAFLCIQSLKIQLLESDNPIPDLYELPSELLDGIVAHLPALALQKFQTNM 56

[Close]

BLAST of Csa7G330380 vs. NCBI nr
Match: gi|700189321|gb|KGN44554.1| (hypothetical protein Csa_7G330380 [Cucumis sativus])

HSP 1 Score: 125.2 bits (313), Expect = 4.1e-26
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1


Query: 1  MAEAPSLLSLCIALVRDEILQRDDVPPALYDLPPHLLDTLALRLPPLALRNLQSGMYVFP 60
          MAEAPSLLSLCIALVRDEILQRDDVPPALYDLPPHLLDTLALRLPPLALRNLQSGMYVFP
Sbjct: 1  MAEAPSLLSLCIALVRDEILQRDDVPPALYDLPPHLLDTLALRLPPLALRNLQSGMYVFP 60

Query: 61 P 62
          P
Sbjct: 61 P 61

[Close]

BLAST of Csa7G330380 vs. NCBI nr
Match: gi|778726790|ref|XP_011659160.1| (PREDICTED: NACHT, LRR and PYD domains-containing protein 5 isoform X2 [Cucumis sativus])

HSP 1 Score: 113.2 bits (282), Expect = 1.6e-22
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1


Query: 1  MAEAPSLLSLCIALVRDEILQRDDVPPALYDLPPHLLDTLALRLPPLALRNLQSGM 57
          MAEAPSLLSLCIALVRDEILQRDDVPPALYDLPPHLLDTLALRLPPLALRNLQSGM
Sbjct: 1  MAEAPSLLSLCIALVRDEILQRDDVPPALYDLPPHLLDTLALRLPPLALRNLQSGM 56

[Close]

BLAST of Csa7G330380 vs. NCBI nr
Match: gi|449443929|ref|XP_004139728.1| (PREDICTED: protein NLRC3 isoform X1 [Cucumis sativus])

HSP 1 Score: 113.2 bits (282), Expect = 1.6e-22
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1


Query: 1  MAEAPSLLSLCIALVRDEILQRDDVPPALYDLPPHLLDTLALRLPPLALRNLQSGM 57
          MAEAPSLLSLCIALVRDEILQRDDVPPALYDLPPHLLDTLALRLPPLALRNLQSGM
Sbjct: 1  MAEAPSLLSLCIALVRDEILQRDDVPPALYDLPPHLLDTLALRLPPLALRNLQSGM 56

[Close]

BLAST of Csa7G330380 vs. NCBI nr
Match: gi|778726793|ref|XP_011659161.1| (PREDICTED: NACHT, LRR and PYD domains-containing protein 5 isoform X3 [Cucumis sativus])

HSP 1 Score: 113.2 bits (282), Expect = 1.6e-22
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1


Query: 1  MAEAPSLLSLCIALVRDEILQRDDVPPALYDLPPHLLDTLALRLPPLALRNLQSGM 57
          MAEAPSLLSLCIALVRDEILQRDDVPPALYDLPPHLLDTLALRLPPLALRNLQSGM
Sbjct: 1  MAEAPSLLSLCIALVRDEILQRDDVPPALYDLPPHLLDTLALRLPPLALRNLQSGM 56

[Close]

BLAST of Csa7G330380 vs. NCBI nr
Match: gi|659124105|ref|XP_008461991.1| (PREDICTED: leucine-rich repeat-containing protein 16A isoform X2 [Cucumis melo])

HSP 1 Score: 102.8 bits (255), Expect = 2.2e-19
Identity = 51/56 (91.07%), Postives = 53/56 (94.64%), Query Frame = 1


Query: 1  MAEAPSLLSLCIALVRDEILQRDDVPPALYDLPPHLLDTLALRLPPLALRNLQSGM 57
          MAEAPSLLSLCIALV DEI+QRDDVPPALYDLPP LLDTLAL+LPPLAL NLQSGM
Sbjct: 1  MAEAPSLLSLCIALVTDEIVQRDDVPPALYDLPPDLLDTLALQLPPLALHNLQSGM 56

The following BLAST results are available for this feature:

BLAST of Csa7G330380 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6N3_CUCSA	2.8e-26	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G330380 PE=4 SV=1	[more]
W9QPE8_9ROSA	7.7e-08	51.79	Ribonuclease inhibitor OS=Morus notabilis GN=L484_015926 PE=4 SV=1	[more]
A0A067JRC0_JATCU	6.6e-07	50.00	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17590 PE=4 SV=1	[more]
A0A0R0KS78_SOYBN	8.6e-07	62.26	Uncharacterized protein OS=Glycine max GN=GLYMA_03G169900 PE=4 SV=1	[more]
K7KFL9_SOYBN	8.6e-07	62.26	Uncharacterized protein OS=Glycine max GN=GLYMA_03G169900 PE=4 SV=1	[more]

BLAST of Csa7G330380 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G20210.1	2.0e-07	44.64	RNI-like superfamily protein	[more]

BLAST of Csa7G330380 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700189321\|gb\|KGN44554.1\|	4.1e-26	100.00	hypothetical protein Csa_7G330380 [Cucumis sativus]	[more]
gi\|778726790\|ref\|XP_011659160.1\|	1.6e-22	100.00	PREDICTED: NACHT, LRR and PYD domains-containing protein 5 isoform X2 [Cucumis s...	[more]
gi\|449443929\|ref\|XP_004139728.1\|	1.6e-22	100.00	PREDICTED: protein NLRC3 isoform X1 [Cucumis sativus]	[more]
gi\|778726793\|ref\|XP_011659161.1\|	1.6e-22	100.00	PREDICTED: NACHT, LRR and PYD domains-containing protein 5 isoform X3 [Cucumis s...	[more]
gi\|659124105\|ref\|XP_008461991.1\|	2.2e-19	91.07	PREDICTED: leucine-rich repeat-containing protein 16A isoform X2 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa7G330380.1	Csa7G330380.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa7G330380	Lsi02G020410	Bottle gourd (USVL1VR-Ls)	culsiB503
Csa7G330380	CSPI07G13650	Wild cucumber (PI 183967)	cpicuB354

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa7G330380	Melon (DHL92) v3.6.1	cumedB515
Csa7G330380	Silver-seed gourd	carcuB0096
Csa7G330380	Watermelon (97103) v2	cuwmbB550
Csa7G330380	Watermelon (97103) v2	cuwmbB571
Csa7G330380	Wax gourd	cuwgoB706
Csa7G330380	Cucumber (Chinese Long) v2	cucuB132
Csa7G330380	Cucumber (Gy14) v1	cgycuB076
Csa7G330380	Cucurbita maxima (Rimu)	cmacuB531
Csa7G330380	Cucurbita maxima (Rimu)	cmacuB647
Csa7G330380	Cucurbita maxima (Rimu)	cmacuB916
Csa7G330380	Cucurbita moschata (Rifu)	cmocuB522
Csa7G330380	Cucurbita moschata (Rifu)	cmocuB902
Csa7G330380	Melon (DHL92) v3.5.1	cumeB539
Csa7G330380	Watermelon (Charleston Gray)	cuwcgB525
Csa7G330380	Watermelon (Charleston Gray)	cuwcgB565
Csa7G330380	Watermelon (97103) v1	cuwmB567
Csa7G330380	Watermelon (97103) v1	cuwmB587
Csa7G330380	Cucurbita pepo (Zucchini)	cpecuB340
Csa7G330380	Cucurbita pepo (Zucchini)	cpecuB769
Csa7G330380	Bottle gourd (USVL1VR-Ls)	culsiB526
Csa7G330380	Cucumber (Gy14) v2	cgybcuB152
Csa7G330380	Cucumber (Gy14) v2	cgybcuB323