Csa7G320040 (gene) Cucumber (Chinese Long) v2

NameCsa7G320040
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionTracheary element differentiation-related 7A
LocationChr7 : 11095920 .. 11096519 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCCCAATCCAACAACCAACTTAATTAATTGAGAGAAGTCTTTGTTGACACCAAAAATGGCCGTTGAAAATAGTTCCAACCTCCCTCGAATCCCTCCGCCTCCACCTTTTAAGCCATCGCCCTTATCTCCACCGCCGTCGCCCGACGGTCACACAGCAATCATTGTAATCGTTTTTATTTCCTTAGGCTCTTGCCTTTTCTTCGTCGCTTTCGTTGCAGCTGCCGTTTGTTGCTTTATCAAAAAGAGAAAGAAGAAGTCATGTCCTCAAGAAGTTGTAGAGGCCATCCATATCGATGGACATCGGAAAGTCCACGAAGATGTTGCTGAGGTCGGTCATGGGCAGCAGGCAGTGGTGGTGACGATCGAGGATGATCTTCACATAGACGAAATTGTTAAGAAGAAAGAGCATGGACATGGACATGGCTTGCATGGTAAGCAACATGAAGGAGGCAGCCATAATAATAATTCTACCACAATGGAAGTAGCAGCTTCTTCTTCTAGTACTTCTTGAGAACATTATTGGGTGGCTCTCCAATTTCATCTAAATTTTATTCATATCAATAATAATATTATGTTGTATTTACAATTACAACTCTTAAC

mRNA sequence

ATGGCCGTTGAAAATAGTTCCAACCTCCCTCGAATCCCTCCGCCTCCACCTTTTAAGCCATCGCCCTTATCTCCACCGCCGTCGCCCGACGGTCACACAGCAATCATTGTAATCGTTTTTATTTCCTTAGGCTCTTGCCTTTTCTTCGTCGCTTTCGTTGCAGCTGCCGTTTGTTGCTTTATCAAAAAGAGAAAGAAGAAGTCATGTCCTCAAGAAGTTGTAGAGGCCATCCATATCGATGGACATCGGAAAGTCCACGAAGATGTTGCTGAGGTCGGTCATGGGCAGCAGGCAGTGGTGGTGACGATCGAGGATGATCTTCACATAGACGAAATTGTTAAGAAGAAAGAGCATGGACATGGACATGGCTTGCATGGTAAGCAACATGAAGGAGGCAGCCATAATAATAATTCTACCACAATGGAAGTAGCAGCTTCTTCTTCTAGTACTTCTTGA

Coding sequence (CDS)

ATGGCCGTTGAAAATAGTTCCAACCTCCCTCGAATCCCTCCGCCTCCACCTTTTAAGCCATCGCCCTTATCTCCACCGCCGTCGCCCGACGGTCACACAGCAATCATTGTAATCGTTTTTATTTCCTTAGGCTCTTGCCTTTTCTTCGTCGCTTTCGTTGCAGCTGCCGTTTGTTGCTTTATCAAAAAGAGAAAGAAGAAGTCATGTCCTCAAGAAGTTGTAGAGGCCATCCATATCGATGGACATCGGAAAGTCCACGAAGATGTTGCTGAGGTCGGTCATGGGCAGCAGGCAGTGGTGGTGACGATCGAGGATGATCTTCACATAGACGAAATTGTTAAGAAGAAAGAGCATGGACATGGACATGGCTTGCATGGTAAGCAACATGAAGGAGGCAGCCATAATAATAATTCTACCACAATGGAAGTAGCAGCTTCTTCTTCTAGTACTTCTTGA

Protein sequence

MAVENSSNLPRIPPPPPFKPSPLSPPPSPDGHTAIIVIVFISLGSCLFFVAFVAAAVCCFIKKRKKKSCPQEVVEAIHIDGHRKVHEDVAEVGHGQQAVVVTIEDDLHIDEIVKKKEHGHGHGLHGKQHEGGSHNNNSTTMEVAASSSSTS*
BLAST of Csa7G320040 vs. TrEMBL
Match: A0A0A0K4D1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G320040 PE=4 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 1.4e-82
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 1

Query: 1   MAVENSSNLPRIPPPPPFKPSPLSPPPSPDGHTAIIVIVFISLGSCLFFVAFVAAAVCCF 60
           MAVENSSNLPRIPPPPPFKPSPLSPPPSPDGHTAIIVIVFISLGSCLFFVAFVAAAVCCF
Sbjct: 1   MAVENSSNLPRIPPPPPFKPSPLSPPPSPDGHTAIIVIVFISLGSCLFFVAFVAAAVCCF 60

Query: 61  IKKRKKKSCPQEVVEAIHIDGHRKVHEDVAEVGHGQQAVVVTIEDDLHIDEIVKKKEHGH 120
           IKKRKKKSCPQEVVEAIHIDGHRKVHEDVAEVGHGQQAVVVTIEDDLHIDEIVKKKEHGH
Sbjct: 61  IKKRKKKSCPQEVVEAIHIDGHRKVHEDVAEVGHGQQAVVVTIEDDLHIDEIVKKKEHGH 120

Query: 121 GHGLHGKQHEGGSHNNNSTTMEVAASSSSTS 152
           GHGLHGKQHEGGSHNNNSTTMEVAASSSSTS
Sbjct: 121 GHGLHGKQHEGGSHNNNSTTMEVAASSSSTS 151

BLAST of Csa7G320040 vs. TrEMBL
Match: W9RTU8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_023880 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 5.3e-26
Identity = 66/134 (49.25%), Postives = 91/134 (67.91%), Query Frame = 1

Query: 10  PRIPPPPPFKPSPLSP-PPSPDGHTAIIVIVFISLGSCLFFVAFVAAAVCCFIKKRKKKS 69
           P +PP PP +P PL P PPSPD H  +IVIVFIS+G  +FF+AF+AAA+ CF+KKRKK++
Sbjct: 57  PPLPPRPPVQPPPLPPRPPSPDNHPTVIVIVFISVGG-VFFLAFLAAALFCFLKKRKKRT 116

Query: 70  CPQEVVEAIHIDGHRKVHEDVAEVGHGQQAVVVTIEDDLHIDEIVKKKEHGHGHGLHGKQ 129
             +   + IH + H+K+ E + E  HG + VV+++EDD+HIDE  K+K    G GLH K 
Sbjct: 117 VQE--TDIIHFNEHKKIKEAIVEGPHGIETVVLSVEDDIHIDE-EKQKNEKVGEGLHAKS 176

Query: 130 HEG-----GSHNNN 138
            EG     GSH ++
Sbjct: 177 VEGNIASSGSHQHH 186

BLAST of Csa7G320040 vs. TrEMBL
Match: W9QU73_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_007306 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 5.3e-26
Identity = 64/130 (49.23%), Postives = 89/130 (68.46%), Query Frame = 1

Query: 10  PRIPPPPPFKPSPLSP-PPSPDGHTAIIVIVFISLGSCLFFVAFVAAAVCCFIKKRKKKS 69
           P +PP PP +P PL P PPSPD H  +IV+VFIS+G  +FF+AF+AAA+ CF+KKRKKK+
Sbjct: 38  PPLPPHPPVQPPPLPPRPPSPDNHPTVIVVVFISVGG-VFFLAFLAAALFCFLKKRKKKT 97

Query: 70  CPQEVVEAIHIDGHRKVHEDVAEVGHGQQAVVVTIEDDLHIDEIVKKKEHGHGHGLHGKQ 129
             +   + IH + H+K+ E + E  HG + VV+++EDD+HIDE  K+K    G GLH K 
Sbjct: 98  VQE--TDIIHFNEHKKIKEAIVEGPHGIETVVLSVEDDIHIDE-EKQKNEKVGEGLHAKS 157

Query: 130 HEGGSHNNNS 139
            EG   ++ S
Sbjct: 158 VEGNIASSGS 163

BLAST of Csa7G320040 vs. TrEMBL
Match: M5VIZ2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb021634mg PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.0e-24
Identity = 62/118 (52.54%), Postives = 84/118 (71.19%), Query Frame = 1

Query: 10  PRIPPPPPFKPSPLSPPPSPDGHTAIIVIVFISLGSCLFFVAFVAAAVCCFIKKRKKKSC 69
           P + PPPP    PL P PSPD +  +I+IVFISLGS +FF+AF+A A+ C+IK+RKKK+ 
Sbjct: 73  PHVRPPPP----PLPPSPSPDNNPTVIIIVFISLGS-VFFLAFLAFALLCWIKRRKKKTI 132

Query: 70  PQEVVEAIHIDGHRKVHEDVAEVGHGQQAVVVTIEDDLHIDEIVKKKEHGHGHGLHGK 128
            +   + IHID HRK+ E + E  +G QAVV+++EDD+HIDE ++K E     GLHGK
Sbjct: 133 QE--TDIIHIDKHRKIKEKIVEGPYGPQAVVLSVEDDVHIDEEIRKNETIGHKGLHGK 183

BLAST of Csa7G320040 vs. TrEMBL
Match: M5VIZ2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb021634mg PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 8.0e-06
Identity = 30/60 (50.00%), Postives = 40/60 (66.67%), Query Frame = 1

Query: 66  KKSCPQEVVEAIHIDGHRKVHEDVAEVGHGQQAVVVTIEDDLHIDEIVKKKEHGHGHGLH 125
           K S  Q   E I+ D H+KV ED+    +G +AVV+TIEDD+H+DE+V+K E   G GLH
Sbjct: 185 KSSDVQAETEIINFDEHKKVKEDIVGGPYGSKAVVLTIEDDVHMDEVVRKNER-VGKGLH 243


HSP 2 Score: 119.4 bits (298), Expect = 3.8e-24
Identity = 58/109 (53.21%), Postives = 79/109 (72.48%), Query Frame = 1

Query: 10  PRIPPPPPFKPSPLSPPPSPDGH-TAIIVIVFISLGSCLFFVAFVAAAVCCFIKKRKKKS 69
           P  PPPP  +PSP  P PSP  + T  IVIVF+S G  +FF+AF+AA +CCF+KK+KKK 
Sbjct: 38  PPPPPPPHVRPSPPPPAPSPSNNSTTTIVIVFVSFGG-VFFLAFLAACLCCFLKKKKKKK 97

Query: 70  CPQEVVEAIHIDGHRKVHEDVAEVGHGQQAVVVTIEDDLHIDEIVKKKE 118
             +E  E IH+D H+K+ E + E  HG QA+V+ IEDD+H+DE++KK+E
Sbjct: 98  EIKET-ELIHVDEHKKIKEAIVEGPHGPQAIVLEIEDDVHVDEVIKKEE 144

BLAST of Csa7G320040 vs. TAIR10
Match: AT5G48920.1 (AT5G48920.1 tracheary element differentiation-related 7)

HSP 1 Score: 95.9 bits (237), Expect = 2.3e-20
Identity = 50/108 (46.30%), Postives = 68/108 (62.96%), Query Frame = 1

Query: 10  PRIPPPPPFKPSPLSPPPSPDGHTAIIVIVFISLGSCLFFVAFVAAAVCCFIKKRKKKSC 69
           P  PPPPP    P  P P+P  H  +I++V ISLGS LFF+AF+AAA+ C++KKR+K S 
Sbjct: 74  PHQPPPPPHVLPPPPPTPAPGHH--VIIVVVISLGS-LFFLAFLAAALFCYLKKRRKSST 133

Query: 70  PQEVVEAIHIDGHRKVHEDVAEVGHGQQAVVVTIEDDLHIDEIVKKKE 118
             E++E    D H KV E + +  HG+Q  VV +E+D+H+ E + K E
Sbjct: 134 KAEIIE---FDEHLKVQETIVQGPHGEQTRVVMLEEDIHLVEDIHKTE 175

BLAST of Csa7G320040 vs. TAIR10
Match: AT1G43790.1 (AT1G43790.1 tracheary element differentiation-related 6)

HSP 1 Score: 82.0 bits (201), Expect = 3.4e-16
Identity = 39/93 (41.94%), Postives = 64/93 (68.82%), Query Frame = 1

Query: 25  PPPSPDGHTAIIVIVFISLGSCLFFVAFVAAAVCCFIKKRKKKSCPQEVVEAIHIDGHRK 84
           P P+PD  T ++V+VF+SLG C+ F+AF+A  +   IKKR +K   +E  EA+ +D H K
Sbjct: 10  PTPTPDHDTTVVVVVFVSLG-CVMFLAFLAFVIWFLIKKRSRKH--RERSEAVRVDEHFK 69

Query: 85  VHEDVAEVGHGQQAVVVTIEDDLHIDEIVKKKE 118
           + E + E  +GQ++VV+++EDD+ I++ +K++E
Sbjct: 70  MKEAIVEGPNGQKSVVLSVEDDVKIEDAIKREE 99

BLAST of Csa7G320040 vs. NCBI nr
Match: gi|700189272|gb|KGN44505.1| (hypothetical protein Csa_7G320040 [Cucumis sativus])

HSP 1 Score: 313.5 bits (802), Expect = 2.0e-82
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 1

Query: 1   MAVENSSNLPRIPPPPPFKPSPLSPPPSPDGHTAIIVIVFISLGSCLFFVAFVAAAVCCF 60
           MAVENSSNLPRIPPPPPFKPSPLSPPPSPDGHTAIIVIVFISLGSCLFFVAFVAAAVCCF
Sbjct: 1   MAVENSSNLPRIPPPPPFKPSPLSPPPSPDGHTAIIVIVFISLGSCLFFVAFVAAAVCCF 60

Query: 61  IKKRKKKSCPQEVVEAIHIDGHRKVHEDVAEVGHGQQAVVVTIEDDLHIDEIVKKKEHGH 120
           IKKRKKKSCPQEVVEAIHIDGHRKVHEDVAEVGHGQQAVVVTIEDDLHIDEIVKKKEHGH
Sbjct: 61  IKKRKKKSCPQEVVEAIHIDGHRKVHEDVAEVGHGQQAVVVTIEDDLHIDEIVKKKEHGH 120

Query: 121 GHGLHGKQHEGGSHNNNSTTMEVAASSSSTS 152
           GHGLHGKQHEGGSHNNNSTTMEVAASSSSTS
Sbjct: 121 GHGLHGKQHEGGSHNNNSTTMEVAASSSSTS 151

BLAST of Csa7G320040 vs. NCBI nr
Match: gi|659123107|ref|XP_008461492.1| (PREDICTED: uncharacterized protein LOC103500076 [Cucumis melo])

HSP 1 Score: 299.7 bits (766), Expect = 3.0e-78
Identity = 144/151 (95.36%), Postives = 146/151 (96.69%), Query Frame = 1

Query: 1   MAVENSSNLPRIPPPPPFKPSPLSPPPSPDGHTAIIVIVFISLGSCLFFVAFVAAAVCCF 60
           MAVENSSNL RIPPPPPFKPSPL PPPSPDGHTAIIVIVFISLGSCLFFVAFVA  VCCF
Sbjct: 1   MAVENSSNLNRIPPPPPFKPSPLPPPPSPDGHTAIIVIVFISLGSCLFFVAFVATVVCCF 60

Query: 61  IKKRKKKSCPQEVVEAIHIDGHRKVHEDVAEVGHGQQAVVVTIEDDLHIDEIVKKKEHGH 120
           IKKRKKKSCPQEVVEAI IDGHRKVHEDVAEVGHGQQA+VVTIEDD+HIDEIVKKKEHGH
Sbjct: 61  IKKRKKKSCPQEVVEAIRIDGHRKVHEDVAEVGHGQQAMVVTIEDDVHIDEIVKKKEHGH 120

Query: 121 GHGLHGKQHEGGSHNNNSTTMEVAASSSSTS 152
           GHGLHGKQHEGGSHNNNSTTMEVAASSSSTS
Sbjct: 121 GHGLHGKQHEGGSHNNNSTTMEVAASSSSTS 151

BLAST of Csa7G320040 vs. NCBI nr
Match: gi|703103476|ref|XP_010097739.1| (hypothetical protein L484_023880 [Morus notabilis])

HSP 1 Score: 125.6 bits (314), Expect = 7.6e-26
Identity = 66/134 (49.25%), Postives = 91/134 (67.91%), Query Frame = 1

Query: 10  PRIPPPPPFKPSPLSP-PPSPDGHTAIIVIVFISLGSCLFFVAFVAAAVCCFIKKRKKKS 69
           P +PP PP +P PL P PPSPD H  +IVIVFIS+G  +FF+AF+AAA+ CF+KKRKK++
Sbjct: 57  PPLPPRPPVQPPPLPPRPPSPDNHPTVIVIVFISVGG-VFFLAFLAAALFCFLKKRKKRT 116

Query: 70  CPQEVVEAIHIDGHRKVHEDVAEVGHGQQAVVVTIEDDLHIDEIVKKKEHGHGHGLHGKQ 129
             +   + IH + H+K+ E + E  HG + VV+++EDD+HIDE  K+K    G GLH K 
Sbjct: 117 VQE--TDIIHFNEHKKIKEAIVEGPHGIETVVLSVEDDIHIDE-EKQKNEKVGEGLHAKS 176

Query: 130 HEG-----GSHNNN 138
            EG     GSH ++
Sbjct: 177 VEGNIASSGSHQHH 186

BLAST of Csa7G320040 vs. NCBI nr
Match: gi|703078084|ref|XP_010090776.1| (hypothetical protein L484_007306 [Morus notabilis])

HSP 1 Score: 125.6 bits (314), Expect = 7.6e-26
Identity = 64/130 (49.23%), Postives = 89/130 (68.46%), Query Frame = 1

Query: 10  PRIPPPPPFKPSPLSP-PPSPDGHTAIIVIVFISLGSCLFFVAFVAAAVCCFIKKRKKKS 69
           P +PP PP +P PL P PPSPD H  +IV+VFIS+G  +FF+AF+AAA+ CF+KKRKKK+
Sbjct: 38  PPLPPHPPVQPPPLPPRPPSPDNHPTVIVVVFISVGG-VFFLAFLAAALFCFLKKRKKKT 97

Query: 70  CPQEVVEAIHIDGHRKVHEDVAEVGHGQQAVVVTIEDDLHIDEIVKKKEHGHGHGLHGKQ 129
             +   + IH + H+K+ E + E  HG + VV+++EDD+HIDE  K+K    G GLH K 
Sbjct: 98  VQE--TDIIHFNEHKKIKEAIVEGPHGIETVVLSVEDDIHIDE-EKQKNEKVGEGLHAKS 157

Query: 130 HEGGSHNNNS 139
            EG   ++ S
Sbjct: 158 VEGNIASSGS 163

BLAST of Csa7G320040 vs. NCBI nr
Match: gi|694405787|ref|XP_009377729.1| (PREDICTED: proline-rich receptor-like protein kinase PERK2 [Pyrus x bretschneideri])

HSP 1 Score: 124.8 bits (312), Expect = 1.3e-25
Identity = 64/124 (51.61%), Postives = 86/124 (69.35%), Query Frame = 1

Query: 11  RIPPPPPFKPSP--LSPPPSPDGHTAIIVIVFISLGSCLFFVAFVAAAVCCFIKKRKKKS 70
           R PPPP  +P P  L P P+PD H  +IVIVFISLGS +FF+AF+A A+ C+IK+RKKK+
Sbjct: 122 RPPPPPHVRPPPPQLPPSPTPDNHPTVIVIVFISLGS-VFFLAFLAVALLCYIKRRKKKT 181

Query: 71  CPQEVVEAIHIDGHRKVHEDVAEVGHGQQAVVVTIEDDLHIDEIVKKKEHGHGHGLHGKQ 130
             +   + IHID HRK+ E + E  +G QAV++++EDD+HIDE ++K E     GLHGK 
Sbjct: 182 IQE--TDFIHIDKHRKIKEAIVEGPNGPQAVLLSVEDDVHIDEEIRKNETISHEGLHGKV 241

Query: 131 HEGG 133
              G
Sbjct: 242 KSSG 242

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0K4D1_CUCSA1.4e-82100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G320040 PE=4 SV=1[more]
W9RTU8_9ROSA5.3e-2649.25Uncharacterized protein OS=Morus notabilis GN=L484_023880 PE=4 SV=1[more]
W9QU73_9ROSA5.3e-2649.23Uncharacterized protein OS=Morus notabilis GN=L484_007306 PE=4 SV=1[more]
M5VIZ2_PRUPE1.0e-2452.54Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb021634mg PE=4 SV=1[more]
M5VIZ2_PRUPE8.0e-0650.00Uncharacterized protein OS=Prunus persica GN=PRUPE_ppb021634mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G48920.12.3e-2046.30 tracheary element differentiation-related 7[more]
AT1G43790.13.4e-1641.94 tracheary element differentiation-related 6[more]
Match NameE-valueIdentityDescription
gi|700189272|gb|KGN44505.1|2.0e-82100.00hypothetical protein Csa_7G320040 [Cucumis sativus][more]
gi|659123107|ref|XP_008461492.1|3.0e-7895.36PREDICTED: uncharacterized protein LOC103500076 [Cucumis melo][more]
gi|703103476|ref|XP_010097739.1|7.6e-2649.25hypothetical protein L484_023880 [Morus notabilis][more]
gi|703078084|ref|XP_010090776.1|7.6e-2649.23hypothetical protein L484_007306 [Morus notabilis][more]
gi|694405787|ref|XP_009377729.1|1.3e-2551.61PREDICTED: proline-rich receptor-like protein kinase PERK2 [Pyrus x bretschneide... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013320ConA-like_dom_sf
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009834 plant-type secondary cell wall biogenesis
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU120233cucumber EST collection version 3.0transcribed_cluster
CU138051cucumber EST collection version 3.0transcribed_cluster
CU140271cucumber EST collection version 3.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa7G320040.1Csa7G320040.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU120233CU120233transcribed_cluster
CU138051CU138051transcribed_cluster
CU140271CU140271transcribed_cluster


Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013320Concanavalin A-like lectin/glucanase domainGENE3DG3DSA:2.60.120.200coord: 6..75
score: 5.
NoneNo IPR availablePANTHERPTHR35697FAMILY NOT NAMEDcoord: 10..117
score: 3.5
NoneNo IPR availablePANTHERPTHR35697:SF1SUBFAMILY NOT NAMEDcoord: 10..117
score: 3.5