Csa7G312410 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa7G312410
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Tpr domain containing protein
Location	Chr7 : 10845959 .. 10846201 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACATTTTTGCATTCCTTAAATCAATTTACGTTGCAAGTAATAAGTTCATTTTAGCTGGGGAAAAGGAGACTGTTTCTTCAGCCATTCAAAAGGCAAAAAGATTCAGATCAACTGAGCTCCTTAGACGAGGTGTGCTCTTAGTTCCTGTCATATGGGGTGAAGGTAGGGAACCCCAAATAGAAAAGAAAGGGTTTGGTGCTTCAACCACCATTGCTACTACTATGCCATCGGGTAAGTAA

mRNA sequence

ATGTACATTTTTGCATTCCTTAAATCAATTTACGTTGCAAGTAATAAGTTCATTTTAGCTGGGGAAAAGGAGACTGTTTCTTCAGCCATTCAAAAGGCAAAAAGATTCAGATCAACTGAGCTCCTTAGACGAGGTGTGCTCTTAGTTCCTGTCATATGGGGTGAAGGTAGGGAACCCCAAATAGAAAAGAAAGGGTTTGGTGCTTCAACCACCATTGCTACTACTATGCCATCGGGTAAGTAA

Coding sequence (CDS)

ATGTACATTTTTGCATTCCTTAAATCAATTTACGTTGCAAGTAATAAGTTCATTTTAGCTGGGGAAAAGGAGACTGTTTCTTCAGCCATTCAAAAGGCAAAAAGATTCAGATCAACTGAGCTCCTTAGACGAGGTGTGCTCTTAGTTCCTGTCATATGGGGTGAAGGTAGGGAACCCCAAATAGAAAAGAAAGGGTTTGGTGCTTCAACCACCATTGCTACTACTATGCCATCGGGTAAGTAA

Protein sequence

MYIFAFLKSIYVASNKFILAGEKETVSSAIQKAKRFRSTELLRRGVLLVPVIWGEGREPQIEKKGFGASTTIATTMPSGK*

Homology

[Close]

BLAST of Csa7G312410 vs. Swiss-Prot
Match: LPA1_ARATH (Protein LOW PSII ACCUMULATION 1, chloroplastic OS=Arabidopsis thaliana GN=LPA1 PE=1 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.0e-17
Identity = 45/61 (73.77%), Postives = 52/61 (85.25%), Query Frame = 1


Query: 18  ILAGEKETVSSAIQKAKRFRSTELLRRGVLLVPVIWGEGREPQIEKKGFGASTTIATTMP 77
           ILAG+KETV+ A+QKA RFR TELLRRGVLLVPV+WGE + P+IEKKGFGAS+  AT++P
Sbjct: 302 ILAGKKETVTLAMQKADRFR-TELLRRGVLLVPVVWGERKTPEIEKKGFGASSKAATSLP 361

Query: 78  S 79
           S
Sbjct: 362 S 361

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BLAST of Csa7G312410 vs. TrEMBL
Match: A0A0A0K9K1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G312410 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 6.7e-36
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 1


Query: 1  MYIFAFLKSIYVASNKFILAGEKETVSSAIQKAKRFRSTELLRRGVLLVPVIWGEGREPQ 60
          MYIFAFLKSIYVASNKFILAGEKETVSSAIQKAKRFRSTELLRRGVLLVPVIWGEGREPQ
Sbjct: 1  MYIFAFLKSIYVASNKFILAGEKETVSSAIQKAKRFRSTELLRRGVLLVPVIWGEGREPQ 60

Query: 61 IEKKGFGASTTIATTMPSGK 81
          IEKKGFGASTTIATTMPSGK
Sbjct: 61 IEKKGFGASTTIATTMPSGK 80

[Close]

BLAST of Csa7G312410 vs. TrEMBL
Match: A0A0A0KT96_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G001650 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 6.3e-18
Identity = 53/62 (85.48%), Postives = 56/62 (90.32%), Query Frame = 1


Query: 18  ILAGEKETVSSAIQKAKRFRSTELLRRGVLLVPVIWGEGREPQIEKKGFGASTT-IATTM 77
           ILAG+KETVSSAIQKA+RFR TELLRRGVLLVPVIWGEGREPQIEKKGFGA TT  A  +
Sbjct: 283 ILAGKKETVSSAIQKAERFR-TELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAAL 342

Query: 78  PS 79
           PS
Sbjct: 343 PS 343

[Close]

BLAST of Csa7G312410 vs. TrEMBL
Match: A0A0D2SCD3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G129100 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 4.1e-17
Identity = 48/61 (78.69%), Postives = 54/61 (88.52%), Query Frame = 1


Query: 18  ILAGEKETVSSAIQKAKRFRSTELLRRGVLLVPVIWGEGREPQIEKKGFGASTTIATTMP 77
           ILAG+KE+VSSA+QKA+RFR TELLRRGVLLVPVIWGEGR PQ+EKKGFG S   AT +P
Sbjct: 291 ILAGKKESVSSALQKAERFR-TELLRRGVLLVPVIWGEGRTPQVEKKGFGVSKKAATALP 350

Query: 78  S 79
           S
Sbjct: 351 S 350

[Close]

BLAST of Csa7G312410 vs. TrEMBL
Match: A0A0D2TE16_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G129100 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 4.1e-17
Identity = 48/61 (78.69%), Postives = 54/61 (88.52%), Query Frame = 1


Query: 18  ILAGEKETVSSAIQKAKRFRSTELLRRGVLLVPVIWGEGREPQIEKKGFGASTTIATTMP 77
           ILAG+KE+VSSA+QKA+RFR TELLRRGVLLVPVIWGEGR PQ+EKKGFG S   AT +P
Sbjct: 297 ILAGKKESVSSALQKAERFR-TELLRRGVLLVPVIWGEGRTPQVEKKGFGVSKKAATALP 356

Query: 78  S 79
           S
Sbjct: 357 S 356

[Close]

BLAST of Csa7G312410 vs. TrEMBL
Match: A0A0D2SCC8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G129100 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 4.1e-17
Identity = 48/61 (78.69%), Postives = 54/61 (88.52%), Query Frame = 1


Query: 18  ILAGEKETVSSAIQKAKRFRSTELLRRGVLLVPVIWGEGREPQIEKKGFGASTTIATTMP 77
           ILAG+KE+VSSA+QKA+RFR TELLRRGVLLVPVIWGEGR PQ+EKKGFG S   AT +P
Sbjct: 291 ILAGKKESVSSALQKAERFR-TELLRRGVLLVPVIWGEGRTPQVEKKGFGVSKKAATALP 350

Query: 78  S 79
           S
Sbjct: 351 S 350

[Close]

BLAST of Csa7G312410 vs. TAIR10
Match: AT1G02910.1 (AT1G02910.1 tetratricopeptide repeat (TPR)-containing protein)

HSP 1 Score: 89.4 bits (220), Expect = 1.1e-18
Identity = 45/61 (73.77%), Postives = 52/61 (85.25%), Query Frame = 1


Query: 18  ILAGEKETVSSAIQKAKRFRSTELLRRGVLLVPVIWGEGREPQIEKKGFGASTTIATTMP 77
           ILAG+KETV+ A+QKA RFR TELLRRGVLLVPV+WGE + P+IEKKGFGAS+  AT++P
Sbjct: 302 ILAGKKETVTLAMQKADRFR-TELLRRGVLLVPVVWGERKTPEIEKKGFGASSKAATSLP 361

Query: 78  S 79
           S
Sbjct: 362 S 361

[Close]

BLAST of Csa7G312410 vs. NCBI nr
Match: gi|700189253|gb|KGN44486.1| (hypothetical protein Csa_7G312410 [Cucumis sativus])

HSP 1 Score: 157.5 bits (397), Expect = 9.7e-36
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 1


Query: 1  MYIFAFLKSIYVASNKFILAGEKETVSSAIQKAKRFRSTELLRRGVLLVPVIWGEGREPQ 60
          MYIFAFLKSIYVASNKFILAGEKETVSSAIQKAKRFRSTELLRRGVLLVPVIWGEGREPQ
Sbjct: 1  MYIFAFLKSIYVASNKFILAGEKETVSSAIQKAKRFRSTELLRRGVLLVPVIWGEGREPQ 60

Query: 61 IEKKGFGASTTIATTMPSGK 81
          IEKKGFGASTTIATTMPSGK
Sbjct: 61 IEKKGFGASTTIATTMPSGK 80

[Close]

BLAST of Csa7G312410 vs. NCBI nr
Match: gi|659108737|ref|XP_008454363.1| (PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 100.5 bits (249), Expect = 1.4e-18
Identity = 52/61 (85.25%), Postives = 55/61 (90.16%), Query Frame = 1


Query: 18  ILAGEKETVSSAIQKAKRFRSTELLRRGVLLVPVIWGEGREPQIEKKGFGASTTIATTMP 77
           ILAG+KETVSSAIQKA+RFR TELLRRGVLLVPVIWGEGREPQIEKKGFGA    AT +P
Sbjct: 283 ILAGKKETVSSAIQKAERFR-TELLRRGVLLVPVIWGEGREPQIEKKGFGAPAAAATALP 342

Query: 78  S 79
           S
Sbjct: 343 S 342

[Close]

BLAST of Csa7G312410 vs. NCBI nr
Match: gi|659108739|ref|XP_008454364.1| (PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 100.5 bits (249), Expect = 1.4e-18
Identity = 52/61 (85.25%), Postives = 55/61 (90.16%), Query Frame = 1


Query: 18  ILAGEKETVSSAIQKAKRFRSTELLRRGVLLVPVIWGEGREPQIEKKGFGASTTIATTMP 77
           ILAG+KETVSSAIQKA+RFR TELLRRGVLLVPVIWGEGREPQIEKKGFGA    AT +P
Sbjct: 186 ILAGKKETVSSAIQKAERFR-TELLRRGVLLVPVIWGEGREPQIEKKGFGAPAAAATALP 245

Query: 78  S 79
           S
Sbjct: 246 S 245

[Close]

BLAST of Csa7G312410 vs. NCBI nr
Match: gi|778689261|ref|XP_011652924.1| (PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 97.8 bits (242), Expect = 9.1e-18
Identity = 53/62 (85.48%), Postives = 56/62 (90.32%), Query Frame = 1


Query: 18  ILAGEKETVSSAIQKAKRFRSTELLRRGVLLVPVIWGEGREPQIEKKGFGASTT-IATTM 77
           ILAG+KETVSSAIQKA+RFR TELLRRGVLLVPVIWGEGREPQIEKKGFGA TT  A  +
Sbjct: 186 ILAGKKETVSSAIQKAERFR-TELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAAL 245

Query: 78  PS 79
           PS
Sbjct: 246 PS 246

[Close]

BLAST of Csa7G312410 vs. NCBI nr
Match: gi|778689258|ref|XP_004152258.2| (PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 97.8 bits (242), Expect = 9.1e-18
Identity = 53/62 (85.48%), Postives = 56/62 (90.32%), Query Frame = 1


Query: 18  ILAGEKETVSSAIQKAKRFRSTELLRRGVLLVPVIWGEGREPQIEKKGFGASTT-IATTM 77
           ILAG+KETVSSAIQKA+RFR TELLRRGVLLVPVIWGEGREPQIEKKGFGA TT  A  +
Sbjct: 283 ILAGKKETVSSAIQKAERFR-TELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAAL 342

Query: 78  PS 79
           PS
Sbjct: 343 PS 343

The following BLAST results are available for this feature:

BLAST of Csa7G312410 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LPA1_ARATH	2.0e-17	73.77	Protein LOW PSII ACCUMULATION 1, chloroplastic OS=Arabidopsis thaliana GN=LPA1 P...	[more]

BLAST of Csa7G312410 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9K1_CUCSA	6.7e-36	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G312410 PE=4 SV=1	[more]
A0A0A0KT96_CUCSA	6.3e-18	85.48	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G001650 PE=4 SV=1	[more]
A0A0D2SCD3_GOSRA	4.1e-17	78.69	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G129100 PE=4 SV=1	[more]
A0A0D2TE16_GOSRA	4.1e-17	78.69	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G129100 PE=4 SV=1	[more]
A0A0D2SCC8_GOSRA	4.1e-17	78.69	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G129100 PE=4 SV=1	[more]

BLAST of Csa7G312410 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G02910.1	1.1e-18	73.77	tetratricopeptide repeat (TPR)-containing protein	[more]

BLAST of Csa7G312410 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700189253\|gb\|KGN44486.1\|	9.7e-36	100.00	hypothetical protein Csa_7G312410 [Cucumis sativus]	[more]
gi\|659108737\|ref\|XP_008454363.1\|	1.4e-18	85.25	PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic isoform X1 [Cucumis me...	[more]
gi\|659108739\|ref\|XP_008454364.1\|	1.4e-18	85.25	PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic isoform X2 [Cucumis me...	[more]
gi\|778689261\|ref\|XP_011652924.1\|	9.1e-18	85.48	PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic isoform X2 [Cucumis sa...	[more]
gi\|778689258\|ref\|XP_004152258.2\|	9.1e-18	85.48	PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic isoform X1 [Cucumis sa...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010270	photosystem II oxygen evolving complex assembly
biological_process	GO:0010027	thylakoid membrane organization
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa7G312410.1	Csa7G312410.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR17130	MITOCHONDRIAL OUTER MEMBRANE PROTEIN 25	coord: 22..78 score: 1.7
None	No IPR available	PANTHER	PTHR17130:SF20	PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC	coord: 22..78 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa7G312410	Cucurbita pepo (Zucchini)	cpecuB473
Csa7G312410	Cucurbita pepo (Zucchini)	cpecuB592
Csa7G312410	Cucurbita pepo (Zucchini)	cpecuB801
Csa7G312410	Bottle gourd (USVL1VR-Ls)	culsiB503
Csa7G312410	Bottle gourd (USVL1VR-Ls)	culsiB515
Csa7G312410	Cucumber (Gy14) v2	cgybcuB323
Csa7G312410	Melon (DHL92) v3.6.1	cumedB503
Csa7G312410	Silver-seed gourd	carcuB0069
Csa7G312410	Silver-seed gourd	carcuB0303
Csa7G312410	Silver-seed gourd	carcuB0853
Csa7G312410	Watermelon (97103) v2	cuwmbB567
Csa7G312410	Watermelon (97103) v2	cuwmbB571
Csa7G312410	Wax gourd	cuwgoB697
Csa7G312410	Wax gourd	cuwgoB702
Csa7G312410	Cucumber (Gy14) v1	cgycuB076
Csa7G312410	Cucurbita maxima (Rimu)	cmacuB043
Csa7G312410	Cucurbita maxima (Rimu)	cmacuB317
Csa7G312410	Cucurbita maxima (Rimu)	cmacuB489
Csa7G312410	Cucurbita maxima (Rimu)	cmacuB777
Csa7G312410	Cucurbita moschata (Rifu)	cmocuB032
Csa7G312410	Cucurbita moschata (Rifu)	cmocuB305
Csa7G312410	Cucurbita moschata (Rifu)	cmocuB478
Csa7G312410	Cucurbita moschata (Rifu)	cmocuB771
Csa7G312410	Melon (DHL92) v3.5.1	cumeB525
Csa7G312410	Watermelon (Charleston Gray)	cuwcgB523
Csa7G312410	Watermelon (Charleston Gray)	cuwcgB525
Csa7G312410	Watermelon (97103) v1	cuwmB564
Csa7G312410	Watermelon (97103) v1	cuwmB567