Csa7G307410 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa7G307410
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Retrotransposon gag protein
Location	Chr7 : 10682129 .. 10682623 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCTTCAAGCAACGAGATAAAGAAAATATGCATGACACATGGAGCAGATTTAAGAGGTTGGTGAAAGCTTGTCCCTGTCATGGCATTCCCGAATGCGTATCGATGGAGGTGTTCTATTTTGGGTTGAGTAAAGATACTCATCAACTAGTTAATACTTTGTTCGTTGGAGGCATGTTGAGAAGCTCTTACAACCAGATTAAGGCTACATTAGACTCTATGTCCAACAATAGCCAAGAATGGGATGATATTGGTTTTGGCTCTCGCCATAGAGGAAGAACTAAAGAAGGATTGGATAAGAGTGTTGTGGTGGTACTCCAAGGACAAATGATTGCGATGAACAATCTGCTACAATCTATGACATTGTCCCAAGTCAACGCAGCGAACAACTATATTCATGCAGTGAAGCAGGTGAATAAATTTATTGTATGGGATGTGGCAATCCTCACATCACTGGCACATGCCCACTCAATAGTGAAACTATCACGTACGTGA

mRNA sequence

ATGATCTTCAAGCAACGAGATAAAGAAAATATGCATGACACATGGAGCAGATTTAAGAGGTTGGTGAAAGCTTGTCCCTGTCATGGCATTCCCGAATGCGTATCGATGGAGGTGTTCTATTTTGGGTTGAGTAAAGATACTCATCAACTAGTTAATACTTTGTTCGTTGGAGGCATGTTGAGAAGCTCTTACAACCAGATTAAGGCTACATTAGACTCTATGTCCAACAATAGCCAAGAATGGGATGATATTGGTTTTGGCTCTCGCCATAGAGGAAGAACTAAAGAAGGATTGGATAAGAGTGTTGTGGTGGTACTCCAAGGACAAATGATTGCGATGAACAATCTGCTACAATCTATGACATTGTCCCAAGTCAACGCAGCGAACAACTATATTCATGCAGTGAAGCAGGTGAATAAATTTATTGTATGGGATGTGGCAATCCTCACATCACTGGCACATGCCCACTCAATAGTGAAACTATCACGTACGTGA

Coding sequence (CDS)

ATGATCTTCAAGCAACGAGATAAAGAAAATATGCATGACACATGGAGCAGATTTAAGAGGTTGGTGAAAGCTTGTCCCTGTCATGGCATTCCCGAATGCGTATCGATGGAGGTGTTCTATTTTGGGTTGAGTAAAGATACTCATCAACTAGTTAATACTTTGTTCGTTGGAGGCATGTTGAGAAGCTCTTACAACCAGATTAAGGCTACATTAGACTCTATGTCCAACAATAGCCAAGAATGGGATGATATTGGTTTTGGCTCTCGCCATAGAGGAAGAACTAAAGAAGGATTGGATAAGAGTGTTGTGGTGGTACTCCAAGGACAAATGATTGCGATGAACAATCTGCTACAATCTATGACATTGTCCCAAGTCAACGCAGCGAACAACTATATTCATGCAGTGAAGCAGGTGAATAAATTTATTGTATGGGATGTGGCAATCCTCACATCACTGGCACATGCCCACTCAATAGTGAAACTATCACGTACGTGA

Protein sequence

MIFKQRDKENMHDTWSRFKRLVKACPCHGIPECVSMEVFYFGLSKDTHQLVNTLFVGGMLRSSYNQIKATLDSMSNNSQEWDDIGFGSRHRGRTKEGLDKSVVVVLQGQMIAMNNLLQSMTLSQVNAANNYIHAVKQVNKFIVWDVAILTSLAHAHSIVKLSRT*

Homology

[Close]

BLAST of Csa7G307410 vs. TrEMBL
Match: A0A0A0K6F9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G307410 PE=4 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 1.4e-88
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 1


Query: 1   MIFKQRDKENMHDTWSRFKRLVKACPCHGIPECVSMEVFYFGLSKDTHQLVNTLFVGGML 60
           MIFKQRDKENMHDTWSRFKRLVKACPCHGIPECVSMEVFYFGLSKDTHQLVNTLFVGGML
Sbjct: 1   MIFKQRDKENMHDTWSRFKRLVKACPCHGIPECVSMEVFYFGLSKDTHQLVNTLFVGGML 60

Query: 61  RSSYNQIKATLDSMSNNSQEWDDIGFGSRHRGRTKEGLDKSVVVVLQGQMIAMNNLLQSM 120
           RSSYNQIKATLDSMSNNSQEWDDIGFGSRHRGRTKEGLDKSVVVVLQGQMIAMNNLLQSM
Sbjct: 61  RSSYNQIKATLDSMSNNSQEWDDIGFGSRHRGRTKEGLDKSVVVVLQGQMIAMNNLLQSM 120

Query: 121 TLSQVNAANNYIHAVKQVNKFIVWDVAILTSLAHAHSIVKLSRT 165
           TLSQVNAANNYIHAVKQVNKFIVWDVAILTSLAHAHSIVKLSRT
Sbjct: 121 TLSQVNAANNYIHAVKQVNKFIVWDVAILTSLAHAHSIVKLSRT 164

[Close]

BLAST of Csa7G307410 vs. TrEMBL
Match: A0A0A0L0Y4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G131150 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 4.9e-25
Identity = 65/131 (49.62%), Postives = 84/131 (64.12%), Query Frame = 1


Query: 21  LVKACPCHGIPECVSMEVFYFGLSKDTHQLVNTLFVGGMLRSSYNQIKATLDSMSNNSQE 80
           ++K C  H I  CV +E FYFGLS+DT Q V+ +F+GGMLR S N IK TLD+M +NSQE
Sbjct: 1   MMKGCLHHNILGCVIIEQFYFGLSRDTQQFVDAVFIGGMLRLSCNHIKTTLDAMVSNSQE 60

Query: 81  WDDIGFGS--------RHRGRTKEGLDKSVVVVLQGQMIAMNNLLQSMTLSQVNAANNYI 140
           W D  FGS        R +GRT +G + + ++ LQ Q+  MN LLQSM LSQ+NA  + I
Sbjct: 61  WRDNEFGSHNESKGNRREKGRTNKGSNGNAMITLQSQVTEMNKLLQSMALSQLNAIGSSI 120

Query: 141 HAVKQVNKFIV 144
             V QV   +V
Sbjct: 121 KVVHQVLNLVV 131

[Close]

BLAST of Csa7G307410 vs. TrEMBL
Match: U5CUI2_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s04947p00003620 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.9e-13
Identity = 41/129 (31.78%), Postives = 73/129 (56.59%), Query Frame = 1


Query: 1   MIFKQRDKENMHDTWSRFKRLVKACPCHGIPECVSMEVFYFGLSKDTHQLVNTLFVGGML 60
           M F+Q + E+  D W RFK L++ CP HGIP C+ ME FY GL+  +  +++    G +L
Sbjct: 149 MSFQQLEDESTSDAWERFKELLRKCPHHGIPHCIQMETFYNGLNAASRMVLDASANGAIL 208

Query: 61  RSSYNQIKATLDSMSNNSQEWDDIGFGSRHRGRTKEGLDKSVVVVLQGQMIAMNNLLQSM 120
             SYN+    L+++++N+ +W +    +    +    L+   +  L  QM +M N+L+++
Sbjct: 209 SKSYNEAFEILETIASNNYQWSNTRAPTSR--KVAGVLEVDAITALTAQMASMTNVLKNL 268

Query: 121 TLSQVNAAN 130
           ++   NA N
Sbjct: 269 SIG--NAKN 273

[Close]

BLAST of Csa7G307410 vs. TrEMBL
Match: W9RRR5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_012321 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.2e-12
Identity = 40/121 (33.06%), Postives = 64/121 (52.89%), Query Frame = 1


Query: 3   FKQRDKENMHDTWSRFKRLVKACPCHGIPECVSMEVFYFGLSKDTHQLVNTLFVGGMLRS 62
           F Q D E+++  W RFK L++ CP HGIP  + ME FY GL++ T  +V+    G +L  
Sbjct: 25  FHQEDGESVYAAWERFKELLRKCPLHGIPHWIQMETFYNGLNEQTRVMVDAAANGALLAK 84

Query: 63  SYNQIKATLDSMSNNSQEWDDIGFGSRHRGRTKEGLDKSVVVVLQGQMIAMNNLLQSMTL 122
           SYN+    L+ M+ N  +W      +R   +T   L+   +  L  Q+  + N+ ++M  
Sbjct: 85  SYNEGYEILERMATNHYQWSPERLPTR---KTPGVLEVDAITALSAQVSNLTNMFKTMNT 142

Query: 123 S 124
           S
Sbjct: 145 S 142

[Close]

BLAST of Csa7G307410 vs. TrEMBL
Match: M1DRY5_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400043005 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 6.4e-09
Identity = 43/171 (25.15%), Postives = 82/171 (47.95%), Query Frame = 1


Query: 1   MIFKQRDKENMHDTWSRFKRLVKACPCHGIPECVSMEVFYFGLSKDTHQLVNTLFVGGML 60
           + F   D E  H++W RFK L+  CP H IP+ V +E FY  L+     L++ L  GG+ 
Sbjct: 8   LTFNHLDGELFHESWLRFKTLLTQCPTHEIPDLVLLECFYRSLNPSNRGLIDQLIPGGLE 67

Query: 61  RSSYNQIKATLDSMSNNSQ-------------EWDDIGFGSRHRGRTKEGLDKSVVVVLQ 120
           R SY      LD ++N ++             + D++           +   KS++ + Q
Sbjct: 68  RYSYETAAKFLDLLANTNKDTEKDLQLIALLGQMDNLTQKVEELEMMSKEKSKSILPIEQ 127

Query: 121 GQMIAM-NNLLQSMTLSQVNAANNYIHAVKQVNKFIVWDVAILTSLAHAHS 158
           G+++ + N  ++ M L+ +   N     ++++ +    +VA+L  ++ +HS
Sbjct: 128 GRLMEIENRRIKDMLLTILQKLNEQDRVLEEIRE----NVALLNQISGSHS 174

[Close]

BLAST of Csa7G307410 vs. NCBI nr
Match: gi|700189251|gb|KGN44484.1| (hypothetical protein Csa_7G307410 [Cucumis sativus])

HSP 1 Score: 333.6 bits (854), Expect = 2.0e-88
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 1


Query: 1   MIFKQRDKENMHDTWSRFKRLVKACPCHGIPECVSMEVFYFGLSKDTHQLVNTLFVGGML 60
           MIFKQRDKENMHDTWSRFKRLVKACPCHGIPECVSMEVFYFGLSKDTHQLVNTLFVGGML
Sbjct: 1   MIFKQRDKENMHDTWSRFKRLVKACPCHGIPECVSMEVFYFGLSKDTHQLVNTLFVGGML 60

Query: 61  RSSYNQIKATLDSMSNNSQEWDDIGFGSRHRGRTKEGLDKSVVVVLQGQMIAMNNLLQSM 120
           RSSYNQIKATLDSMSNNSQEWDDIGFGSRHRGRTKEGLDKSVVVVLQGQMIAMNNLLQSM
Sbjct: 61  RSSYNQIKATLDSMSNNSQEWDDIGFGSRHRGRTKEGLDKSVVVVLQGQMIAMNNLLQSM 120

Query: 121 TLSQVNAANNYIHAVKQVNKFIVWDVAILTSLAHAHSIVKLSRT 165
           TLSQVNAANNYIHAVKQVNKFIVWDVAILTSLAHAHSIVKLSRT
Sbjct: 121 TLSQVNAANNYIHAVKQVNKFIVWDVAILTSLAHAHSIVKLSRT 164

[Close]

BLAST of Csa7G307410 vs. NCBI nr
Match: gi|700198643|gb|KGN53801.1| (hypothetical protein Csa_4G131150 [Cucumis sativus])

HSP 1 Score: 122.5 bits (306), Expect = 7.0e-25
Identity = 65/131 (49.62%), Postives = 84/131 (64.12%), Query Frame = 1


Query: 21  LVKACPCHGIPECVSMEVFYFGLSKDTHQLVNTLFVGGMLRSSYNQIKATLDSMSNNSQE 80
           ++K C  H I  CV +E FYFGLS+DT Q V+ +F+GGMLR S N IK TLD+M +NSQE
Sbjct: 1   MMKGCLHHNILGCVIIEQFYFGLSRDTQQFVDAVFIGGMLRLSCNHIKTTLDAMVSNSQE 60

Query: 81  WDDIGFGS--------RHRGRTKEGLDKSVVVVLQGQMIAMNNLLQSMTLSQVNAANNYI 140
           W D  FGS        R +GRT +G + + ++ LQ Q+  MN LLQSM LSQ+NA  + I
Sbjct: 61  WRDNEFGSHNESKGNRREKGRTNKGSNGNAMITLQSQVTEMNKLLQSMALSQLNAIGSSI 120

Query: 141 HAVKQVNKFIV 144
             V QV   +V
Sbjct: 121 KVVHQVLNLVV 131

[Close]

BLAST of Csa7G307410 vs. NCBI nr
Match: gi|548830333|gb|ERM93404.1| (hypothetical protein AMTR_s04947p00003620 [Amborella trichopoda])

HSP 1 Score: 84.0 bits (206), Expect = 2.8e-13
Identity = 41/129 (31.78%), Postives = 73/129 (56.59%), Query Frame = 1


Query: 1   MIFKQRDKENMHDTWSRFKRLVKACPCHGIPECVSMEVFYFGLSKDTHQLVNTLFVGGML 60
           M F+Q + E+  D W RFK L++ CP HGIP C+ ME FY GL+  +  +++    G +L
Sbjct: 149 MSFQQLEDESTSDAWERFKELLRKCPHHGIPHCIQMETFYNGLNAASRMVLDASANGAIL 208

Query: 61  RSSYNQIKATLDSMSNNSQEWDDIGFGSRHRGRTKEGLDKSVVVVLQGQMIAMNNLLQSM 120
             SYN+    L+++++N+ +W +    +    +    L+   +  L  QM +M N+L+++
Sbjct: 209 SKSYNEAFEILETIASNNYQWSNTRAPTSR--KVAGVLEVDAITALTAQMASMTNVLKNL 268

Query: 121 TLSQVNAAN 130
           ++   NA N
Sbjct: 269 SIG--NAKN 273

[Close]

BLAST of Csa7G307410 vs. NCBI nr
Match: gi|703134353|ref|XP_010105619.1| (hypothetical protein L484_012321 [Morus notabilis])

HSP 1 Score: 81.3 bits (199), Expect = 1.8e-12
Identity = 40/121 (33.06%), Postives = 64/121 (52.89%), Query Frame = 1


Query: 3   FKQRDKENMHDTWSRFKRLVKACPCHGIPECVSMEVFYFGLSKDTHQLVNTLFVGGMLRS 62
           F Q D E+++  W RFK L++ CP HGIP  + ME FY GL++ T  +V+    G +L  
Sbjct: 25  FHQEDGESVYAAWERFKELLRKCPLHGIPHWIQMETFYNGLNEQTRVMVDAAANGALLAK 84

Query: 63  SYNQIKATLDSMSNNSQEWDDIGFGSRHRGRTKEGLDKSVVVVLQGQMIAMNNLLQSMTL 122
           SYN+    L+ M+ N  +W      +R   +T   L+   +  L  Q+  + N+ ++M  
Sbjct: 85  SYNEGYEILERMATNHYQWSPERLPTR---KTPGVLEVDAITALSAQVSNLTNMFKTMNT 142

Query: 123 S 124
           S
Sbjct: 145 S 142

[Close]

BLAST of Csa7G307410 vs. NCBI nr
Match: gi|985471059|ref|XP_015381143.1| (PREDICTED: uncharacterized protein LOC107174616 [Citrus sinensis])

HSP 1 Score: 80.9 bits (198), Expect = 2.3e-12
Identity = 40/133 (30.08%), Postives = 71/133 (53.38%), Query Frame = 1


Query: 3   FKQRDKENMHDTWSRFKRLVKACPCHGIPECVSMEVFYFGLSKDTHQLVNTLFVGGMLRS 62
           F Q + E+++D W RFK L++ CP HGIP C+ +E FY GL++ T  +V+    G +L  
Sbjct: 19  FHQLEDESLYDAWERFKELLRRCPYHGIPCCIQLETFYNGLNQSTRLMVDASANGALLSK 78

Query: 63  SYNQIKATLDSMSNNSQEWDDIGFGSRHRGRTKEGLDKSVVVVLQGQMIAMNNLLQSMTL 122
           SYN+    L+ ++NN+ +W      +         +D   +  L  Q+  +  ++++MT 
Sbjct: 79  SYNEAYEILEIITNNNYQWPSTRQAAARGTAGVHNVD--ALTTLSAQVTLLTKMVKAMTT 138

Query: 123 --SQVNAANNYIH 134
             + VN  ++  H
Sbjct: 139 APATVNQISDMSH 149

The following BLAST results are available for this feature:

BLAST of Csa7G307410 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6F9_CUCSA	1.4e-88	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G307410 PE=4 SV=1	[more]
A0A0A0L0Y4_CUCSA	4.9e-25	49.62	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G131150 PE=4 SV=1	[more]
U5CUI2_AMBTC	1.9e-13	31.78	Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s04947p00003620 PE=4 SV=...	[more]
W9RRR5_9ROSA	1.2e-12	33.06	Uncharacterized protein OS=Morus notabilis GN=L484_012321 PE=4 SV=1	[more]
M1DRY5_SOLTU	6.4e-09	25.15	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400043005 PE=4 SV=1	[more]

BLAST of Csa7G307410 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700189251\|gb\|KGN44484.1\|	2.0e-88	100.00	hypothetical protein Csa_7G307410 [Cucumis sativus]	[more]
gi\|700198643\|gb\|KGN53801.1\|	7.0e-25	49.62	hypothetical protein Csa_4G131150 [Cucumis sativus]	[more]
gi\|548830333\|gb\|ERM93404.1\|	2.8e-13	31.78	hypothetical protein AMTR_s04947p00003620 [Amborella trichopoda]	[more]
gi\|703134353\|ref\|XP_010105619.1\|	1.8e-12	33.06	hypothetical protein L484_012321 [Morus notabilis]	[more]
gi\|985471059\|ref\|XP_015381143.1\|	2.3e-12	30.08	PREDICTED: uncharacterized protein LOC107174616 [Citrus sinensis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa7G307410.1	Csa7G307410.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa7G307410	Bottle gourd (USVL1VR-Ls)	culsiB503
Csa7G307410	Bottle gourd (USVL1VR-Ls)	culsiB515
Csa7G307410	Cucumber (Gy14) v2	cgybcuB323
Csa7G307410	Melon (DHL92) v3.6.1	cumedB503
Csa7G307410	Silver-seed gourd	carcuB0069
Csa7G307410	Silver-seed gourd	carcuB0303
Csa7G307410	Silver-seed gourd	carcuB0853
Csa7G307410	Watermelon (97103) v2	cuwmbB567
Csa7G307410	Watermelon (97103) v2	cuwmbB571
Csa7G307410	Wax gourd	cuwgoB697
Csa7G307410	Wax gourd	cuwgoB702
Csa7G307410	Cucumber (Gy14) v1	cgycuB076
Csa7G307410	Cucurbita maxima (Rimu)	cmacuB043
Csa7G307410	Cucurbita maxima (Rimu)	cmacuB317
Csa7G307410	Cucurbita maxima (Rimu)	cmacuB489
Csa7G307410	Cucurbita maxima (Rimu)	cmacuB777
Csa7G307410	Cucurbita moschata (Rifu)	cmocuB032
Csa7G307410	Cucurbita moschata (Rifu)	cmocuB305
Csa7G307410	Cucurbita moschata (Rifu)	cmocuB478
Csa7G307410	Cucurbita moschata (Rifu)	cmocuB771
Csa7G307410	Melon (DHL92) v3.5.1	cumeB525
Csa7G307410	Watermelon (Charleston Gray)	cuwcgB523
Csa7G307410	Watermelon (Charleston Gray)	cuwcgB525
Csa7G307410	Watermelon (97103) v1	cuwmB564
Csa7G307410	Watermelon (97103) v1	cuwmB567
Csa7G307410	Cucurbita pepo (Zucchini)	cpecuB473
Csa7G307410	Cucurbita pepo (Zucchini)	cpecuB592
Csa7G307410	Cucurbita pepo (Zucchini)	cpecuB801