Csa7G306900 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa7G306900
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr7 : 10653723 .. 10654730 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTTTAATCGCACAACAGCCCAATCTCCTAACAACGCACCTTCACAACAAACATCTATCGTCAGACCAAGTGAATAACCAACCACCCAATAGTAGCTTAGCACCTGACCTCAATGAGCTACCTAACCCTGCCACATTTAGAACTACCCCGACTAATTCTGGTGAGCCGACATCCGAAGATGTTCAGATTATTGAACCTAACCTCCCTCTTACCATCAGAATGTAATGACCCATCTTTTCTAAATAAGTCGAGGTCATTAACTTTTGATAAAAGATCTTGATGAATACAAAATGAATATAAGACATTTGAAAAATATACAATCGAGGAAAAATAACTTTAAACGGGCCCGGTTTCAAATTATTGTTTTATGTTTGAAACCGGGCTCGTTTAAAGTTATTTTTCCTCGATTGTATATTTTTCAAATGTCTTATATTCATTTTGTATTCATCAAGATCTTTTATCAAAAGTTAATGACCTCGACTTATTTAGAAAAGTTGGGTCATTAAAGCCACCACCCCAACATACTAGATGAAAATAGATGCACAATTTCCACATAGGAGGAAGGTTGTAAAGATACAGAAGTGTTGGGCGAGGAAAGCCATTGTGAGGCCATATATGCTAATGAGGAGAATAAAACAATCGAGATCCCTGCAATGTGGGATGCATTTCAGGAGATGCTAAGAGAAAATAAGGGGTTAAAAGAGCAAATAGCCAATTTGAACACTCAAATGCGAGAAATGGTCGCAACGATCAATCAGCTATTCTCTACAATATCCAATAGGAGTTGCTTACTGGTAACACATTCTACCCAGTCCCGCCAAATCACAGAGTGACACAATAGACAATTCACCGCCCATGGGATATATCTACGTGACTCTTGTGCAGTGCGTACCGCAACTGATCATCACACCAGAATTAGTGACCCACATTCGTCCTCTCAATGTTCCAAACTCTCCTCTTGGCGATGCAACTACCTGTCCTCCTCATCCTGAAACTTACCAATAG

mRNA sequence

ATGCCTTTAATCGCACAACAGCCCAATCTCCTAACAACGCACCTTCACAACAAACATCTATCGTCAGACCAAGTGAATAACCAACCACCCAATAGTAGCTTAGCACCTGACCTCAATGAGCTACCTAACCCTGCCACATTTAGAACTACCCCGACTAATTCTGGTGAGCCGACATCCGAAGATGAGGAAGGTTGTAAAGATACAGAAGTGTTGGGCGAGGAAAGCCATTGTGAGGCCATATATGCTAATGAGGAGAATAAAACAATCGAGATCCCTGCAATGTGGGATGCATTTCAGGAGATGCTAAGAGAAAATAAGGGGTTAAAAGAGCAAATAGCCAATTTGAACACTCAAATGCGAGAAATGGTCGCAACGATCAATCAGCTATTCTCTACAATATCCAATAGGAGTTGCTTACTGTGCGTACCGCAACTGATCATCACACCAGAATTAGTGACCCACATTCGTCCTCTCAATGTTCCAAACTCTCCTCTTGGCGATGCAACTACCTGTCCTCCTCATCCTGAAACTTACCAATAG

Coding sequence (CDS)

ATGCCTTTAATCGCACAACAGCCCAATCTCCTAACAACGCACCTTCACAACAAACATCTATCGTCAGACCAAGTGAATAACCAACCACCCAATAGTAGCTTAGCACCTGACCTCAATGAGCTACCTAACCCTGCCACATTTAGAACTACCCCGACTAATTCTGGTGAGCCGACATCCGAAGATGAGGAAGGTTGTAAAGATACAGAAGTGTTGGGCGAGGAAAGCCATTGTGAGGCCATATATGCTAATGAGGAGAATAAAACAATCGAGATCCCTGCAATGTGGGATGCATTTCAGGAGATGCTAAGAGAAAATAAGGGGTTAAAAGAGCAAATAGCCAATTTGAACACTCAAATGCGAGAAATGGTCGCAACGATCAATCAGCTATTCTCTACAATATCCAATAGGAGTTGCTTACTGTGCGTACCGCAACTGATCATCACACCAGAATTAGTGACCCACATTCGTCCTCTCAATGTTCCAAACTCTCCTCTTGGCGATGCAACTACCTGTCCTCCTCATCCTGAAACTTACCAATAG

Protein sequence

MPLIAQQPNLLTTHLHNKHLSSDQVNNQPPNSSLAPDLNELPNPATFRTTPTNSGEPTSEDEEGCKDTEVLGEESHCEAIYANEENKTIEIPAMWDAFQEMLRENKGLKEQIANLNTQMREMVATINQLFSTISNRSCLLCVPQLIITPELVTHIRPLNVPNSPLGDATTCPPHPETYQ*
Homology
[Close]
BLAST of Csa7G306900 vs. TrEMBL
Match: A0A0A0K820_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G306900 PE=4 SV=1)

HSP 1 Score: 372.1 bits (954), Expect = 3.9e-100
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 1 

Query: 1   MPLIAQQPNLLTTHLHNKHLSSDQVNNQPPNSSLAPDLNELPNPATFRTTPTNSGEPTSE 60
           MPLIAQQPNLLTTHLHNKHLSSDQVNNQPPNSSLAPDLNELPNPATFRTTPTNSGEPTSE
Sbjct: 1   MPLIAQQPNLLTTHLHNKHLSSDQVNNQPPNSSLAPDLNELPNPATFRTTPTNSGEPTSE 60

Query: 61  DEEGCKDTEVLGEESHCEAIYANEENKTIEIPAMWDAFQEMLRENKGLKEQIANLNTQMR 120
           DEEGCKDTEVLGEESHCEAIYANEENKTIEIPAMWDAFQEMLRENKGLKEQIANLNTQMR
Sbjct: 61  DEEGCKDTEVLGEESHCEAIYANEENKTIEIPAMWDAFQEMLRENKGLKEQIANLNTQMR 120

Query: 121 EMVATINQLFSTISNRSCLLCVPQLIITPELVTHIRPLNVPNSPLGDATTCPPHPETYQ 180
           EMVATINQLFSTISNRSCLLCVPQLIITPELVTHIRPLNVPNSPLGDATTCPPHPETYQ
Sbjct: 121 EMVATINQLFSTISNRSCLLCVPQLIITPELVTHIRPLNVPNSPLGDATTCPPHPETYQ 179

[Close]
BLAST of Csa7G306900 vs. NCBI nr
Match: gi|700189249|gb|KGN44482.1| (hypothetical protein Csa_7G306900 [Cucumis sativus])

HSP 1 Score: 372.1 bits (954), Expect = 5.5e-100
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 1 

Query: 1   MPLIAQQPNLLTTHLHNKHLSSDQVNNQPPNSSLAPDLNELPNPATFRTTPTNSGEPTSE 60
           MPLIAQQPNLLTTHLHNKHLSSDQVNNQPPNSSLAPDLNELPNPATFRTTPTNSGEPTSE
Sbjct: 1   MPLIAQQPNLLTTHLHNKHLSSDQVNNQPPNSSLAPDLNELPNPATFRTTPTNSGEPTSE 60

Query: 61  DEEGCKDTEVLGEESHCEAIYANEENKTIEIPAMWDAFQEMLRENKGLKEQIANLNTQMR 120
           DEEGCKDTEVLGEESHCEAIYANEENKTIEIPAMWDAFQEMLRENKGLKEQIANLNTQMR
Sbjct: 61  DEEGCKDTEVLGEESHCEAIYANEENKTIEIPAMWDAFQEMLRENKGLKEQIANLNTQMR 120

Query: 121 EMVATINQLFSTISNRSCLLCVPQLIITPELVTHIRPLNVPNSPLGDATTCPPHPETYQ 180
           EMVATINQLFSTISNRSCLLCVPQLIITPELVTHIRPLNVPNSPLGDATTCPPHPETYQ
Sbjct: 121 EMVATINQLFSTISNRSCLLCVPQLIITPELVTHIRPLNVPNSPLGDATTCPPHPETYQ 179

The following BLAST results are available for this feature:
BLAST of Csa7G306900 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K820_CUCSA3.9e-100100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G306900 PE=4 SV=1[more]
BLAST of Csa7G306900 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700189249|gb|KGN44482.1|5.5e-100100.00hypothetical protein Csa_7G306900 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa7G306900.1Csa7G306900.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 98..125
scor