Csa7G302360 (gene) Cucumber (Chinese Long) v2

NameCsa7G302360
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionEukaryotic translation initiation factor 2 subunit 1; contains IPR012340 (Nucleic acid-binding, OB-fold)
LocationChr7 : 10551029 .. 10552421 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATCCAAAGGACCATGGGCAAGGTAAGCCTTTGGCGTTCTGTTTGAAGTCTATTTATAATAGAAAAATCTCAGGGCGTTACCTTTCTATTCTTGTTGAAAGTTCTTTGCTGACAATAGTGATATGAAACCCTGCACATTGGATCTAAAAAAAAGAACACAACCCCAACATCCCAAAACCAATTTGATTTCAACCCCTAAATTGGTTCGATGATCTAACAAATCGAGGATTAGATAAAGTTAAAAACTCTCATCAATCCTCGATCTTTAAAGCACTCCACACAAGTAAGATAGATCAATTCTCACTTGAATGCTTCAAATATTCGTGCATTCTATCACAAGAACACACATAAACAAAATTCTACACTTTTAGAATTTCCAAATTCATTCATTCAAATTCTTATCTTAAAGGGATAAATTACAACCATATTTATACTAATTAAAATATTAAATAAATACATAAGTCCTTAAACATTTAATTTTATGACTTTTGGGCTTGTCCAAATAACTTTTCAACTTCCAACCATTGCATCTCCTTAACTTCTTCATTGCTTCATTTGCTTCATTCGTCTATTCTCCCTTTTTCCCTTGTGTCGATTTTCTCATCTCCCTCACCTCACCGTTCGCTCATCGTTGATCTCCCTCATGGCAGTTCTCTCATTGCAGTTCATCGATTTCTAGTGGTAGTGAGTCCAAACACCAAAGGTAACTCTTCACTCTTCACTCTTCCCTCTCTCTCGTTTCCCTCACCGTCTTTGTCTATTTATATTTTCTTTTGTAAATGTCATTTCTTGATTTTTGAACTCTCTCCAACCCTTTCAACAATGGCTTCCCATTCCTCTAACCTCGAGTGTCGGATTTACGAGGCAAAGTACCCAGAGGTCGATATGGTTGTCATGATTCAAGTCAAGAACATCGCCGATATGGGCGCCTACGTCTCCCTTCTTGAATACAACAATATCGAGGGTATGATTCTATTCTCCAAGCTCTATTTTGATTGTAGTTAACCAAATCTGTAATTAACTCTTAAATTTTTTTGAACTTTTTAGTTCTTGCAAGTTGTAATTTCTTGTTTTCTTGATTTCATGCTTTGTGAATTGATGTAGATTATTTTGTTAAATTATAAGTCTAGTCTAATATTGAGACGCCGACCCTAGGAAAGTCTCAGAGTTCTATTTATCTTTTAATACCTTTTATTTTGATTCAACGTTCTTGTTGGTTTTCTTAAATTTGGAGATGTTGATTTTCTTGTCCTTTAAGTTAGAAGATGTTAACTTGGGGAAGGGTATATGATTTATCGTGTGATTGCCAAATTTTGATTCTTAGGGATCGGGAAGAAGATAAGAAGGCTGCATTTGACATGTTTTTATGAGTTTTACTGGAAACTATGA

mRNA sequence

ATGAAATCCAAAGGACCATGGGCAAGTTCTCTCATTGCAGTTCATCGATTTCTAGTGGTAGTGAGTCCAAACACCAAAGGTAACTCTTCACTCTTCACTCTTCCCTCTCTCTCGTTTCCCTCACCGTCTTTGTCTATTTATATTTTCTTTTGTAAATGTCATTTCTTGATTTTTGAACTCTCTCCAACCCTTTCAACAATGGCTTCCCATTCCTCTAACCTCGAGTGTCGGATTTACGAGGCAAAGTACCCAGAGGTCGATATGGTTGTCATGATTCAAGTCAAGAACATCGCCGATATGGGCGCCTACGTCTCCCTTCTTGAATACAACAATATCGAGGGGATCGGGAAGAAGATAAGAAGGCTGCATTTGACATGTTTTTATGAGTTTTACTGGAAACTATGA

Coding sequence (CDS)

ATGAAATCCAAAGGACCATGGGCAAGTTCTCTCATTGCAGTTCATCGATTTCTAGTGGTAGTGAGTCCAAACACCAAAGGTAACTCTTCACTCTTCACTCTTCCCTCTCTCTCGTTTCCCTCACCGTCTTTGTCTATTTATATTTTCTTTTGTAAATGTCATTTCTTGATTTTTGAACTCTCTCCAACCCTTTCAACAATGGCTTCCCATTCCTCTAACCTCGAGTGTCGGATTTACGAGGCAAAGTACCCAGAGGTCGATATGGTTGTCATGATTCAAGTCAAGAACATCGCCGATATGGGCGCCTACGTCTCCCTTCTTGAATACAACAATATCGAGGGGATCGGGAAGAAGATAAGAAGGCTGCATTTGACATGTTTTTATGAGTTTTACTGGAAACTATGA

Protein sequence

MKSKGPWASSLIAVHRFLVVVSPNTKGNSSLFTLPSLSFPSPSLSIYIFFCKCHFLIFELSPTLSTMASHSSNLECRIYEAKYPEVDMVVMIQVKNIADMGAYVSLLEYNNIEGIGKKIRRLHLTCFYEFYWKL*
BLAST of Csa7G302360 vs. Swiss-Prot
Match: IF2A_XENLA (Eukaryotic translation initiation factor 2 subunit 1 OS=Xenopus laevis GN=eif2s1 PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.4e-10
Identity = 30/42 (71.43%), Postives = 35/42 (83.33%), Query Frame = 1

Query: 74  LECRIYEAKYPEVDMVVMIQVKNIADMGAYVSLLEYNNIEGI 116
           L CR Y+ K+PEVD VVM+ V++IA+MGAYVSLLEYNNIEG+
Sbjct: 4   LNCRFYQHKFPEVDDVVMVNVRSIAEMGAYVSLLEYNNIEGM 45

BLAST of Csa7G302360 vs. Swiss-Prot
Match: IF2A_XENTR (Eukaryotic translation initiation factor 2 subunit 1 OS=Xenopus tropicalis GN=eif2s1 PE=2 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.4e-10
Identity = 30/42 (71.43%), Postives = 35/42 (83.33%), Query Frame = 1

Query: 74  LECRIYEAKYPEVDMVVMIQVKNIADMGAYVSLLEYNNIEGI 116
           L CR Y+ K+PEVD VVM+ V++IA+MGAYVSLLEYNNIEG+
Sbjct: 4   LSCRFYQHKFPEVDDVVMVNVRSIAEMGAYVSLLEYNNIEGM 45

BLAST of Csa7G302360 vs. Swiss-Prot
Match: IF2A_BOVIN (Eukaryotic translation initiation factor 2 subunit 1 OS=Bos taurus GN=EIF2S1 PE=2 SV=2)

HSP 1 Score: 65.9 bits (159), Expect = 4.0e-10
Identity = 29/42 (69.05%), Postives = 35/42 (83.33%), Query Frame = 1

Query: 74  LECRIYEAKYPEVDMVVMIQVKNIADMGAYVSLLEYNNIEGI 116
           L CR Y+ K+PEV+ VVM+ V++IA+MGAYVSLLEYNNIEG+
Sbjct: 4   LSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGM 45

BLAST of Csa7G302360 vs. Swiss-Prot
Match: IF2A_RAT (Eukaryotic translation initiation factor 2 subunit 1 OS=Rattus norvegicus GN=Eif2s1 PE=1 SV=2)

HSP 1 Score: 65.9 bits (159), Expect = 4.0e-10
Identity = 29/42 (69.05%), Postives = 35/42 (83.33%), Query Frame = 1

Query: 74  LECRIYEAKYPEVDMVVMIQVKNIADMGAYVSLLEYNNIEGI 116
           L CR Y+ K+PEV+ VVM+ V++IA+MGAYVSLLEYNNIEG+
Sbjct: 4   LSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGM 45

BLAST of Csa7G302360 vs. Swiss-Prot
Match: IF2A_PONAB (Eukaryotic translation initiation factor 2 subunit 1 OS=Pongo abelii GN=EIF2S1 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.0e-10
Identity = 29/42 (69.05%), Postives = 35/42 (83.33%), Query Frame = 1

Query: 74  LECRIYEAKYPEVDMVVMIQVKNIADMGAYVSLLEYNNIEGI 116
           L CR Y+ K+PEV+ VVM+ V++IA+MGAYVSLLEYNNIEG+
Sbjct: 4   LSCRFYQHKFPEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGM 45

BLAST of Csa7G302360 vs. TrEMBL
Match: A0A0A0K811_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G302360 PE=4 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 3.7e-71
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 1

Query: 1   MKSKGPWASSLIAVHRFLVVVSPNTKGNSSLFTLPSLSFPSPSLSIYIFFCKCHFLIFEL 60
           MKSKGPWASSLIAVHRFLVVVSPNTKGNSSLFTLPSLSFPSPSLSIYIFFCKCHFLIFEL
Sbjct: 1   MKSKGPWASSLIAVHRFLVVVSPNTKGNSSLFTLPSLSFPSPSLSIYIFFCKCHFLIFEL 60

Query: 61  SPTLSTMASHSSNLECRIYEAKYPEVDMVVMIQVKNIADMGAYVSLLEYNNIEGIGKKIR 120
           SPTLSTMASHSSNLECRIYEAKYPEVDMVVMIQVKNIADMGAYVSLLEYNNIEGIGKKIR
Sbjct: 61  SPTLSTMASHSSNLECRIYEAKYPEVDMVVMIQVKNIADMGAYVSLLEYNNIEGIGKKIR 120

Query: 121 RLHLTCFYEFYWKL 135
           RLHLTCFYEFYWKL
Sbjct: 121 RLHLTCFYEFYWKL 134

BLAST of Csa7G302360 vs. TrEMBL
Match: A0A0A0K3F3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G232540 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 3.3e-19
Identity = 56/86 (65.12%), Postives = 64/86 (74.42%), Query Frame = 1

Query: 30  SLFTLPSLSFPSPSLSIYIFFCKCHFLIFELSPTLSTMASHSSNLECRIYEAKYPEVDMV 89
           SLF L S S   P L++ +        ++    +LSTMASHS NLECR+YEAKYPEVDM 
Sbjct: 31  SLFPL-SPSSHLPHLTVDLPHGSSLIAVYRFPVSLSTMASHSPNLECRMYEAKYPEVDMA 90

Query: 90  VMIQVKNIADMGAYVSLLEYNNIEGI 116
           VMIQVKNIADMGAYVSLLEYNNIEG+
Sbjct: 91  VMIQVKNIADMGAYVSLLEYNNIEGM 115

BLAST of Csa7G302360 vs. TrEMBL
Match: W9QN46_9ROSA (Eukaryotic translation initiation factor 2 subunit alpha OS=Morus notabilis GN=L484_006929 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 8.9e-17
Identity = 45/49 (91.84%), Postives = 47/49 (95.92%), Query Frame = 1

Query: 67  MASHSSNLECRIYEAKYPEVDMVVMIQVKNIADMGAYVSLLEYNNIEGI 116
           MASHS NLECR+YEAKYPEVDM VMIQVKNIADMGAYVSLLEYNNIEG+
Sbjct: 1   MASHSPNLECRMYEAKYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGM 49

BLAST of Csa7G302360 vs. TrEMBL
Match: V4TH23_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10031993mg PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 2.0e-16
Identity = 44/49 (89.80%), Postives = 47/49 (95.92%), Query Frame = 1

Query: 67  MASHSSNLECRIYEAKYPEVDMVVMIQVKNIADMGAYVSLLEYNNIEGI 116
           MASHS NLECR+YEA+YPEVDM VMIQVKNIADMGAYVSLLEYNNIEG+
Sbjct: 1   MASHSPNLECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGM 49

BLAST of Csa7G302360 vs. TrEMBL
Match: A0A067G089_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g044309mg PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 2.0e-16
Identity = 44/49 (89.80%), Postives = 47/49 (95.92%), Query Frame = 1

Query: 67  MASHSSNLECRIYEAKYPEVDMVVMIQVKNIADMGAYVSLLEYNNIEGI 116
           MASHS NLECR+YEA+YPEVDM VMIQVKNIADMGAYVSLLEYNNIEG+
Sbjct: 68  MASHSPNLECRMYEARYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGM 116

BLAST of Csa7G302360 vs. TAIR10
Match: AT2G40290.1 (AT2G40290.1 Eukaryotic translation initiation factor 2 subunit 1)

HSP 1 Score: 90.5 bits (223), Expect = 8.5e-19
Identity = 43/49 (87.76%), Postives = 44/49 (89.80%), Query Frame = 1

Query: 67  MASHSSNLECRIYEAKYPEVDMVVMIQVKNIADMGAYVSLLEYNNIEGI 116
           MAS + NLECR+YEAKYPEVDM VMIQVKNIADMGAYVSLLEYNNIEG+
Sbjct: 1   MASQTPNLECRMYEAKYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGM 49

BLAST of Csa7G302360 vs. TAIR10
Match: AT5G05470.1 (AT5G05470.1 eukaryotic translation initiation factor 2 alpha subunit)

HSP 1 Score: 82.8 bits (203), Expect = 1.8e-16
Identity = 38/49 (77.55%), Postives = 43/49 (87.76%), Query Frame = 1

Query: 67  MASHSSNLECRIYEAKYPEVDMVVMIQVKNIADMGAYVSLLEYNNIEGI 116
           MA+ + NLECR+YE++YP+VDM VMIQVK IADMGAYVSLLEYNNIEG+
Sbjct: 1   MANPAPNLECRMYESRYPDVDMAVMIQVKTIADMGAYVSLLEYNNIEGM 49

BLAST of Csa7G302360 vs. NCBI nr
Match: gi|700189239|gb|KGN44472.1| (hypothetical protein Csa_7G302360 [Cucumis sativus])

HSP 1 Score: 275.4 bits (703), Expect = 5.3e-71
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 1

Query: 1   MKSKGPWASSLIAVHRFLVVVSPNTKGNSSLFTLPSLSFPSPSLSIYIFFCKCHFLIFEL 60
           MKSKGPWASSLIAVHRFLVVVSPNTKGNSSLFTLPSLSFPSPSLSIYIFFCKCHFLIFEL
Sbjct: 1   MKSKGPWASSLIAVHRFLVVVSPNTKGNSSLFTLPSLSFPSPSLSIYIFFCKCHFLIFEL 60

Query: 61  SPTLSTMASHSSNLECRIYEAKYPEVDMVVMIQVKNIADMGAYVSLLEYNNIEGIGKKIR 120
           SPTLSTMASHSSNLECRIYEAKYPEVDMVVMIQVKNIADMGAYVSLLEYNNIEGIGKKIR
Sbjct: 61  SPTLSTMASHSSNLECRIYEAKYPEVDMVVMIQVKNIADMGAYVSLLEYNNIEGIGKKIR 120

Query: 121 RLHLTCFYEFYWKL 135
           RLHLTCFYEFYWKL
Sbjct: 121 RLHLTCFYEFYWKL 134

BLAST of Csa7G302360 vs. NCBI nr
Match: gi|700188997|gb|KGN44230.1| (hypothetical protein Csa_7G232540 [Cucumis sativus])

HSP 1 Score: 102.8 bits (255), Expect = 4.7e-19
Identity = 56/86 (65.12%), Postives = 64/86 (74.42%), Query Frame = 1

Query: 30  SLFTLPSLSFPSPSLSIYIFFCKCHFLIFELSPTLSTMASHSSNLECRIYEAKYPEVDMV 89
           SLF L S S   P L++ +        ++    +LSTMASHS NLECR+YEAKYPEVDM 
Sbjct: 31  SLFPL-SPSSHLPHLTVDLPHGSSLIAVYRFPVSLSTMASHSPNLECRMYEAKYPEVDMA 90

Query: 90  VMIQVKNIADMGAYVSLLEYNNIEGI 116
           VMIQVKNIADMGAYVSLLEYNNIEG+
Sbjct: 91  VMIQVKNIADMGAYVSLLEYNNIEGM 115

BLAST of Csa7G302360 vs. NCBI nr
Match: gi|703065712|ref|XP_010087524.1| (Eukaryotic translation initiation factor 2 subunit alpha [Morus notabilis])

HSP 1 Score: 94.7 bits (234), Expect = 1.3e-16
Identity = 45/49 (91.84%), Postives = 47/49 (95.92%), Query Frame = 1

Query: 67  MASHSSNLECRIYEAKYPEVDMVVMIQVKNIADMGAYVSLLEYNNIEGI 116
           MASHS NLECR+YEAKYPEVDM VMIQVKNIADMGAYVSLLEYNNIEG+
Sbjct: 1   MASHSPNLECRMYEAKYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGM 49

BLAST of Csa7G302360 vs. NCBI nr
Match: gi|1009132704|ref|XP_015883515.1| (PREDICTED: eukaryotic translation initiation factor 2 subunit alpha-like [Ziziphus jujuba])

HSP 1 Score: 94.7 bits (234), Expect = 1.3e-16
Identity = 45/49 (91.84%), Postives = 47/49 (95.92%), Query Frame = 1

Query: 67  MASHSSNLECRIYEAKYPEVDMVVMIQVKNIADMGAYVSLLEYNNIEGI 116
           MASHS NLECR+YEAKYPEVDM VMIQVKNIADMGAYVSLLEYNNIEG+
Sbjct: 1   MASHSPNLECRMYEAKYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGM 49

BLAST of Csa7G302360 vs. NCBI nr
Match: gi|659092652|ref|XP_008447163.1| (PREDICTED: eukaryotic translation initiation factor 2 subunit alpha [Cucumis melo])

HSP 1 Score: 94.7 bits (234), Expect = 1.3e-16
Identity = 45/49 (91.84%), Postives = 47/49 (95.92%), Query Frame = 1

Query: 67  MASHSSNLECRIYEAKYPEVDMVVMIQVKNIADMGAYVSLLEYNNIEGI 116
           MASHS NLECR+YEAKYPEVDM VMIQVKNIADMGAYVSLLEYNNIEG+
Sbjct: 1   MASHSPNLECRMYEAKYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGM 49

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
IF2A_XENLA1.4e-1071.43Eukaryotic translation initiation factor 2 subunit 1 OS=Xenopus laevis GN=eif2s1... [more]
IF2A_XENTR1.4e-1071.43Eukaryotic translation initiation factor 2 subunit 1 OS=Xenopus tropicalis GN=ei... [more]
IF2A_BOVIN4.0e-1069.05Eukaryotic translation initiation factor 2 subunit 1 OS=Bos taurus GN=EIF2S1 PE=... [more]
IF2A_RAT4.0e-1069.05Eukaryotic translation initiation factor 2 subunit 1 OS=Rattus norvegicus GN=Eif... [more]
IF2A_PONAB4.0e-1069.05Eukaryotic translation initiation factor 2 subunit 1 OS=Pongo abelii GN=EIF2S1 P... [more]
Match NameE-valueIdentityDescription
A0A0A0K811_CUCSA3.7e-71100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G302360 PE=4 SV=1[more]
A0A0A0K3F3_CUCSA3.3e-1965.12Uncharacterized protein OS=Cucumis sativus GN=Csa_7G232540 PE=4 SV=1[more]
W9QN46_9ROSA8.9e-1791.84Eukaryotic translation initiation factor 2 subunit alpha OS=Morus notabilis GN=L... [more]
V4TH23_9ROSI2.0e-1689.80Uncharacterized protein OS=Citrus clementina GN=CICLE_v10031993mg PE=4 SV=1[more]
A0A067G089_CITSI2.0e-1689.80Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g044309mg PE=4 S... [more]
Match NameE-valueIdentityDescription
AT2G40290.18.5e-1987.76 Eukaryotic translation initiation factor 2 subunit 1[more]
AT5G05470.11.8e-1677.55 eukaryotic translation initiation factor 2 alpha subunit[more]
Match NameE-valueIdentityDescription
gi|700189239|gb|KGN44472.1|5.3e-71100.00hypothetical protein Csa_7G302360 [Cucumis sativus][more]
gi|700188997|gb|KGN44230.1|4.7e-1965.12hypothetical protein Csa_7G232540 [Cucumis sativus][more]
gi|703065712|ref|XP_010087524.1|1.3e-1691.84Eukaryotic translation initiation factor 2 subunit alpha [Morus notabilis][more]
gi|1009132704|ref|XP_015883515.1|1.3e-1691.84PREDICTED: eukaryotic translation initiation factor 2 subunit alpha-like [Ziziph... [more]
gi|659092652|ref|XP_008447163.1|1.3e-1691.84PREDICTED: eukaryotic translation initiation factor 2 subunit alpha [Cucumis mel... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0006413 translational initiation
cellular_component GO:0005850 eukaryotic translation initiation factor 2 complex
cellular_component GO:0005840 ribosome
cellular_component GO:0005575 cellular_component
molecular_function GO:0003743 translation initiation factor activity

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa7G302360.1Csa7G302360.1mRNA


Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012340Nucleic acid-binding, OB-foldGENE3DG3DSA:2.40.50.140coord: 76..115
score: 5.8
NoneNo IPR availablePANTHERPTHR10602EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 1coord: 64..115
score: 1.3