Csa7G291170 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa7G291170
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr7 : 10261281 .. 10262090 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCCCCTGGAATGGTGACGTAGGGGGGATTTCTGTTAGTGGTATAAAATGTGGAGAAGTTGAAACTGGTCCATTAACTGTGCCAAACAATCACAAAAGCAGTTTTGTAAGGAAGGTTTTGAGATGGTCTTCCAATGATGTGATGCGTGCATGCTCTCTTGCTGGGAACTGTGGTCTTGCAGAGCAGCTAATGCAACAGGTCTTATTTCTTTCCTTCGAGATCATTTTTATTCAATGATACAGCCAGTTGGTACAAGAAATCTTGAATTGAGATAATATTTTTCATAATGTTATCTCTTGGTACCAAAAACTTTTACTTTTATAAACAAGTAATATATATTGTGTATATATATTTTCATAAAATAATGGGTTTCAAATGCTTTAAATAGTTGCCACTTTAAGTTATTTGGATTTTCTTGTTCTTGCTCAGATTTCATCATTGGTGAAATAATTTTTGTTATTTTATACGTTGTACCTTGTGTGAATATTTTTAGAGTTCATTTAGTTCCGTATTTCGTGTGTACTGATGAGACTCGGACATGTCTTTGAAGATGCATAAACTTGGATTGCAACCGTCATCCCACACATTTGATGGTTTTGTTAGATCAGTTGTCTCAGAGAGAGGTTTCAGTGCTGGCATGGAAATAGTAAGTTATTTGGGCTTTGATTAGATCTTGATTATCATTACAAGCTAATCTTTTGCATTCATTTTTTTATTTGTTTCATTTTTCAAGGAGTTTTTAATTTTTATTATGAGGCCAAATATTTATTACTCCCCTAAACGAAGAAACCCCTCTTTTCCAGTTAA

mRNA sequence

ATGGTCCCCTGGAATGGTGACGTAGGGGGGATTTCTGTTAGTGGTATAAAATGTGGAGAAGTTGAAACTGGTCCATTAACTGTGCCAAACAATCACAAAAGCAGTTTTGTAAGGAAGGTTTTGAGATGGTCTTCCAATGATGTGATGCGTGCATGCTCTCTTGCTGGGAACTGTGGTCTTGCAGAGCAGCTAATGCAACAGATAATATTTTTCATAATATGCATAAACTTGGATTGCAACCGTCATCCCACACATTTGATGGTTTTGTTAGATCAGTTGTCTCAGAGAGAGGTTTCAGTGCTGGCATGGAAATATTAA

Coding sequence (CDS)

ATGGTCCCCTGGAATGGTGACGTAGGGGGGATTTCTGTTAGTGGTATAAAATGTGGAGAAGTTGAAACTGGTCCATTAACTGTGCCAAACAATCACAAAAGCAGTTTTGTAAGGAAGGTTTTGAGATGGTCTTCCAATGATGTGATGCGTGCATGCTCTCTTGCTGGGAACTGTGGTCTTGCAGAGCAGCTAATGCAACAGATAATATTTTTCATAATATGCATAAACTTGGATTGCAACCGTCATCCCACACATTTGATGGTTTTGTTAGATCAGTTGTCTCAGAGAGAGGTTTCAGTGCTGGCATGGAAATATTAA

Protein sequence

MVPWNGDVGGISVSGIKCGEVETGPLTVPNNHKSSFVRKVLRWSSNDVMRACSLAGNCGLAEQLMQQIIFFIICINLDCNRHPTHLMVLLDQLSQREVSVLAWKY*

Homology

[Close]

BLAST of Csa7G291170 vs. TrEMBL
Match: A0A0A0K9F7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G291170 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 6.5e-55
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1


Query: 1   MVPWNGDVGGISVSGIKCGEVETGPLTVPNNHKSSFVRKVLRWSSNDVMRACSLAGNCGL 60
           MVPWNGDVGGISVSGIKCGEVETGPLTVPNNHKSSFVRKVLRWSSNDVMRACSLAGNCGL
Sbjct: 1   MVPWNGDVGGISVSGIKCGEVETGPLTVPNNHKSSFVRKVLRWSSNDVMRACSLAGNCGL 60

Query: 61  AEQLMQQIIFFIICINLDCNRHPTHLMVLLDQLSQREVSVLAWKY 106
           AEQLMQQIIFFIICINLDCNRHPTHLMVLLDQLSQREVSVLAWKY
Sbjct: 61  AEQLMQQIIFFIICINLDCNRHPTHLMVLLDQLSQREVSVLAWKY 105

[Close]

BLAST of Csa7G291170 vs. NCBI nr
Match: gi|700189213|gb|KGN44446.1| (hypothetical protein Csa_7G291170 [Cucumis sativus])

HSP 1 Score: 221.1 bits (562), Expect = 9.3e-55
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1


Query: 1   MVPWNGDVGGISVSGIKCGEVETGPLTVPNNHKSSFVRKVLRWSSNDVMRACSLAGNCGL 60
           MVPWNGDVGGISVSGIKCGEVETGPLTVPNNHKSSFVRKVLRWSSNDVMRACSLAGNCGL
Sbjct: 1   MVPWNGDVGGISVSGIKCGEVETGPLTVPNNHKSSFVRKVLRWSSNDVMRACSLAGNCGL 60

Query: 61  AEQLMQQIIFFIICINLDCNRHPTHLMVLLDQLSQREVSVLAWKY 106
           AEQLMQQIIFFIICINLDCNRHPTHLMVLLDQLSQREVSVLAWKY
Sbjct: 61  AEQLMQQIIFFIICINLDCNRHPTHLMVLLDQLSQREVSVLAWKY 105

[Close]

BLAST of Csa7G291170 vs. NCBI nr
Match: gi|778726439|ref|XP_004139754.2| (PREDICTED: pentatricopeptide repeat-containing protein At1g76280 isoform X1 [Cucumis sativus])

HSP 1 Score: 143.3 bits (360), Expect = 2.5e-31
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 1


Query: 1   MVPWNGDVGGISVSGIKCGEVETGPLTVPNNHKSSFVRKVLRWSSNDVMRACSLAGNCGL 60
           MVPWNGDVGGISVSGIKCGEVETGPLTVPNNHKSSFVRKVLRWSSNDVMRACSLAGNCGL
Sbjct: 302 MVPWNGDVGGISVSGIKCGEVETGPLTVPNNHKSSFVRKVLRWSSNDVMRACSLAGNCGL 361

Query: 61  AEQLMQQI 69
           AEQLMQQ+
Sbjct: 362 AEQLMQQM 369

[Close]

BLAST of Csa7G291170 vs. NCBI nr
Match: gi|778726443|ref|XP_011659099.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g76280 isoform X2 [Cucumis sativus])

HSP 1 Score: 143.3 bits (360), Expect = 2.5e-31
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 1


Query: 1   MVPWNGDVGGISVSGIKCGEVETGPLTVPNNHKSSFVRKVLRWSSNDVMRACSLAGNCGL 60
           MVPWNGDVGGISVSGIKCGEVETGPLTVPNNHKSSFVRKVLRWSSNDVMRACSLAGNCGL
Sbjct: 246 MVPWNGDVGGISVSGIKCGEVETGPLTVPNNHKSSFVRKVLRWSSNDVMRACSLAGNCGL 305

Query: 61  AEQLMQQI 69
           AEQLMQQ+
Sbjct: 306 AEQLMQQM 313

[Close]

BLAST of Csa7G291170 vs. NCBI nr
Match: gi|778726446|ref|XP_011659100.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g76280 isoform X3 [Cucumis sativus])

HSP 1 Score: 143.3 bits (360), Expect = 2.5e-31
Identity = 67/68 (98.53%), Postives = 68/68 (100.00%), Query Frame = 1


Query: 1   MVPWNGDVGGISVSGIKCGEVETGPLTVPNNHKSSFVRKVLRWSSNDVMRACSLAGNCGL 60
           MVPWNGDVGGISVSGIKCGEVETGPLTVPNNHKSSFVRKVLRWSSNDVMRACSLAGNCGL
Sbjct: 302 MVPWNGDVGGISVSGIKCGEVETGPLTVPNNHKSSFVRKVLRWSSNDVMRACSLAGNCGL 361

Query: 61  AEQLMQQI 69
           AEQLMQQ+
Sbjct: 362 AEQLMQQM 369

[Close]

BLAST of Csa7G291170 vs. NCBI nr
Match: gi|659123018|ref|XP_008461447.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g76280 isoform X1 [Cucumis melo])

HSP 1 Score: 127.5 bits (319), Expect = 1.4e-26
Identity = 60/68 (88.24%), Postives = 65/68 (95.59%), Query Frame = 1


Query: 1   MVPWNGDVGGISVSGIKCGEVETGPLTVPNNHKSSFVRKVLRWSSNDVMRACSLAGNCGL 60
           MVPWNGDVGGISV+ +KCG  ETGPLTVPNNH+SSFVRKVLRWSSNDVMR+CSLAGNCGL
Sbjct: 302 MVPWNGDVGGISVNDMKCG--ETGPLTVPNNHRSSFVRKVLRWSSNDVMRSCSLAGNCGL 361

Query: 61  AEQLMQQI 69
           AEQLMQQ+
Sbjct: 362 AEQLMQQM 367

The following BLAST results are available for this feature:

BLAST of Csa7G291170 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9F7_CUCSA	6.5e-55	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G291170 PE=4 SV=1	[more]

BLAST of Csa7G291170 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700189213\|gb\|KGN44446.1\|	9.3e-55	100.00	hypothetical protein Csa_7G291170 [Cucumis sativus]	[more]
gi\|778726439\|ref\|XP_004139754.2\|	2.5e-31	98.53	PREDICTED: pentatricopeptide repeat-containing protein At1g76280 isoform X1 [Cuc...	[more]
gi\|778726443\|ref\|XP_011659099.1\|	2.5e-31	98.53	PREDICTED: pentatricopeptide repeat-containing protein At1g76280 isoform X2 [Cuc...	[more]
gi\|778726446\|ref\|XP_011659100.1\|	2.5e-31	98.53	PREDICTED: pentatricopeptide repeat-containing protein At1g76280 isoform X3 [Cuc...	[more]
gi\|659123018\|ref\|XP_008461447.1\|	1.4e-26	88.24	PREDICTED: pentatricopeptide repeat-containing protein At1g76280 isoform X1 [Cuc...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa7G291170.1	Csa7G291170.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa7G291170	Cla016381	Watermelon (97103) v1	cuwmB567

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa7G291170	Watermelon (97103) v2	cuwmbB571
Csa7G291170	Wax gourd	cuwgoB707
Csa7G291170	Cucumber (Gy14) v1	cgycuB076
Csa7G291170	Cucurbita maxima (Rimu)	cmacuB489
Csa7G291170	Cucurbita moschata (Rifu)	cmocuB032
Csa7G291170	Cucurbita moschata (Rifu)	cmocuB478
Csa7G291170	Melon (DHL92) v3.5.1	cumeB542
Csa7G291170	Watermelon (Charleston Gray)	cuwcgB525
Csa7G291170	Cucurbita pepo (Zucchini)	cpecuB592
Csa7G291170	Cucurbita pepo (Zucchini)	cpecuB801
Csa7G291170	Bottle gourd (USVL1VR-Ls)	culsiB503
Csa7G291170	Cucumber (Gy14) v2	cgybcuB323
Csa7G291170	Melon (DHL92) v3.6.1	cumedB503