Csa7G279820 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa7G279820
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr7 : 9896720 .. 9897079 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGTTGGGTTCTTTCGTTATTAGAAATTCGTGGGGAACTCTCGACTCTTGACCAAAGCCACAATACAATTGCAGGTAGAAAGTACGAGAGCCAAGCTGCTTTGAGCCAGAATGCGTCAGGTTCCTTCGGTATCAAAAACTGCATGGGAAACTCTCGACTCTTGGTCGAAGCCACATTACATTCACCTATAGAATGTAGGAGAGCCAAGTTGCTTTGGGCTAGAAAGTGTCAAGTTCTTTCGATATCAGAACTGCGTAAAAAACTTCAACTCTTATTAGGAGAGCCAAGCCGCTTTGGGCCAGAATGCGTCGGGTTTCTTCGGTATCAGAAATTGCATGGTTGCAGTCTCGACTCTTGA

mRNA sequence

ATGCGTTGGGTTCTTTCGTTATTAGAAATTCGTGGGGAACTCTCGACTCTTGACCAAAGCCACAATACAATTGCAGGTAGAAAGTACGAGAGCCAAGCTGCTTTGAGCCAGAATGCGTCAGGTTCCTTCGGTATCAAAAACTGCATGGGAAACTCTCGACTCTTGGTCGAAGCCACATTACATTCACCTATAGAATGTAGGAGAGCCAAGTTGCTTTGGGCTAGAAAGTGTCAAGTTCTTTCGATATCAGAACTGCGTAAAAAACTTCAACTCTTATTAGGAGAGCCAAGCCGCTTTGGGCCAGAATGCGTCGGGTTTCTTCGGTATCAGAAATTGCATGGTTGCAGTCTCGACTCTTGA

Coding sequence (CDS)

ATGCGTTGGGTTCTTTCGTTATTAGAAATTCGTGGGGAACTCTCGACTCTTGACCAAAGCCACAATACAATTGCAGGTAGAAAGTACGAGAGCCAAGCTGCTTTGAGCCAGAATGCGTCAGGTTCCTTCGGTATCAAAAACTGCATGGGAAACTCTCGACTCTTGGTCGAAGCCACATTACATTCACCTATAGAATGTAGGAGAGCCAAGTTGCTTTGGGCTAGAAAGTGTCAAGTTCTTTCGATATCAGAACTGCGTAAAAAACTTCAACTCTTATTAGGAGAGCCAAGCCGCTTTGGGCCAGAATGCGTCGGGTTTCTTCGGTATCAGAAATTGCATGGTTGCAGTCTCGACTCTTGA

Protein sequence

MRWVLSLLEIRGELSTLDQSHNTIAGRKYESQAALSQNASGSFGIKNCMGNSRLLVEATLHSPIECRRAKLLWARKCQVLSISELRKKLQLLLGEPSRFGPECVGFLRYQKLHGCSLDS*
Homology
[Close]
BLAST of Csa7G279820 vs. TrEMBL
Match: A0A0A0K3X8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G279820 PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 6.9e-61
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 1 

Query: 1   MRWVLSLLEIRGELSTLDQSHNTIAGRKYESQAALSQNASGSFGIKNCMGNSRLLVEATL 60
           MRWVLSLLEIRGELSTLDQSHNTIAGRKYESQAALSQNASGSFGIKNCMGNSRLLVEATL
Sbjct: 1   MRWVLSLLEIRGELSTLDQSHNTIAGRKYESQAALSQNASGSFGIKNCMGNSRLLVEATL 60

Query: 61  HSPIECRRAKLLWARKCQVLSISELRKKLQLLLGEPSRFGPECVGFLRYQKLHGCSLDS 120
           HSPIECRRAKLLWARKCQVLSISELRKKLQLLLGEPSRFGPECVGFLRYQKLHGCSLDS
Sbjct: 61  HSPIECRRAKLLWARKCQVLSISELRKKLQLLLGEPSRFGPECVGFLRYQKLHGCSLDS 119

[Close]
BLAST of Csa7G279820 vs. TrEMBL
Match: A0A0A0K4H8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G279750 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.4e-08
Identity = 54/129 (41.86%), Postives = 69/129 (53.49%), Query Frame = 1 

Query: 3   WVLSLLEIRGELSTLDQSHNTIAGRKYES---------QAALSQ---NASGSFGIKNCMG 62
           W     ++RGELS+L +SH TIA               QA + Q   NAS SF I+  + 
Sbjct: 4   WARMRQKLRGELSSLGRSHITIAPTLQSPVESSIIKTLQARMRQVPSNASSSFDIRKYVE 63

Query: 63  NSRLLVEATLHSPIECRRAKLLWARKCQVLSISEL-------RKKLQL----LLGEPSRF 109
           N+RLLVEATL SP+E RRAK + AR  +V SI +L       R KLQ       G+PS +
Sbjct: 64  NTRLLVEATLQSPVERRRAKPIRARMHRVPSILKLVWSTLDSRLKLQYNCSKKRGDPSCY 123

[Close]
BLAST of Csa7G279820 vs. NCBI nr
Match: gi|700189167|gb|KGN44400.1| (hypothetical protein Csa_7G279820 [Cucumis sativus])

HSP 1 Score: 241.1 bits (614), Expect = 9.8e-61
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 1 

Query: 1   MRWVLSLLEIRGELSTLDQSHNTIAGRKYESQAALSQNASGSFGIKNCMGNSRLLVEATL 60
           MRWVLSLLEIRGELSTLDQSHNTIAGRKYESQAALSQNASGSFGIKNCMGNSRLLVEATL
Sbjct: 1   MRWVLSLLEIRGELSTLDQSHNTIAGRKYESQAALSQNASGSFGIKNCMGNSRLLVEATL 60

Query: 61  HSPIECRRAKLLWARKCQVLSISELRKKLQLLLGEPSRFGPECVGFLRYQKLHGCSLDS 120
           HSPIECRRAKLLWARKCQVLSISELRKKLQLLLGEPSRFGPECVGFLRYQKLHGCSLDS
Sbjct: 61  HSPIECRRAKLLWARKCQVLSISELRKKLQLLLGEPSRFGPECVGFLRYQKLHGCSLDS 119

[Close]
BLAST of Csa7G279820 vs. NCBI nr
Match: gi|700189160|gb|KGN44393.1| (hypothetical protein Csa_7G279750 [Cucumis sativus])

HSP 1 Score: 67.4 bits (163), Expect = 1.9e-08
Identity = 54/129 (41.86%), Postives = 69/129 (53.49%), Query Frame = 1 

Query: 3   WVLSLLEIRGELSTLDQSHNTIAGRKYES---------QAALSQ---NASGSFGIKNCMG 62
           W     ++RGELS+L +SH TIA               QA + Q   NAS SF I+  + 
Sbjct: 4   WARMRQKLRGELSSLGRSHITIAPTLQSPVESSIIKTLQARMRQVPSNASSSFDIRKYVE 63

Query: 63  NSRLLVEATLHSPIECRRAKLLWARKCQVLSISEL-------RKKLQL----LLGEPSRF 109
           N+RLLVEATL SP+E RRAK + AR  +V SI +L       R KLQ       G+PS +
Sbjct: 64  NTRLLVEATLQSPVERRRAKPIRARMHRVPSILKLVWSTLDSRLKLQYNCSKKRGDPSCY 123

The following BLAST results are available for this feature:
BLAST of Csa7G279820 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K3X8_CUCSA6.9e-61100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G279820 PE=4 SV=1[more]
A0A0A0K4H8_CUCSA1.4e-0841.86Uncharacterized protein OS=Cucumis sativus GN=Csa_7G279750 PE=4 SV=1[more]
BLAST of Csa7G279820 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700189167|gb|KGN44400.1|9.8e-61100.00hypothetical protein Csa_7G279820 [Cucumis sativus][more]
gi|700189160|gb|KGN44393.1|1.9e-0841.86hypothetical protein Csa_7G279750 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU139793cucumber EST collection version 3.0transcribed_cluster
CU150407cucumber EST collection version 3.0transcribed_cluster
CU156157cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa7G279820.1Csa7G279820.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU150407CU150407transcribed_cluster
CU139793CU139793transcribed_cluster
CU156157CU156157transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa7G279820Watermelon (97103) v2cuwmbB571
Csa7G279820Wax gourdcuwgoB707
Csa7G279820Cucumber (Gy14) v1cgycuB348
Csa7G279820Watermelon (Charleston Gray)cuwcgB525
Csa7G279820Watermelon (97103) v1cuwmB567
Csa7G279820Bottle gourd (USVL1VR-Ls)culsiB503
Csa7G279820Cucumber (Gy14) v2cgybcuB323