Csa7G274670 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa7G274670
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr7 : 9737303 .. 9737617 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGCGCCGCTGAAGCCTTTCACAACGTCTGCGCCGTCCAAATATTCCACGACGTCTGCGCCGTCAAAACTTTTCGCGACGTCTGCATCGCCACAAACTTTCGCAACGTCGGTGGCTCAAAATCCGTCTGCTACATATTGGGATCGTGTGCGGGGGAAATACTTGACGACGTGGCAGCGAGCGGCGTCGCAGAAAGTATCCCCGACGGACTTTTACCGATGTGTCTGCCGACGTCGTTTGCGGTGTCTCGATAGCTTTTTGCGACGTTGTTTTTGTTTTCGGCGCCGTGTCTGTGCGTCCGAAAAGAGTTAG

mRNA sequence

ATGTTTGCGCCGCTGAAGCCTTTCACAACGTCTGCGCCGTCCAAATATTCCACGACGTCTGCGCCGTCAAAACTTTTCGCGACGTCTGCATCGCCACAAACTTTCGCAACGTCGGTGGCTCAAAATCCGTCTGCTACATATTGGGATCGTGTGCGGGGGAAATACTTGACGACGTGGCAGCGAGCGGCGTCGCAGAAAGTATCCCCGACGGACTTTTACCGATGTGTCTGCCGACGTCGTTTGCGGTGTCTCGATAGCTTTTTGCGACGTTGTTTTTGTTTTCGGCGCCGTGTCTGTGCGTCCGAAAAGAGTTAG

Coding sequence (CDS)

ATGTTTGCGCCGCTGAAGCCTTTCACAACGTCTGCGCCGTCCAAATATTCCACGACGTCTGCGCCGTCAAAACTTTTCGCGACGTCTGCATCGCCACAAACTTTCGCAACGTCGGTGGCTCAAAATCCGTCTGCTACATATTGGGATCGTGTGCGGGGGAAATACTTGACGACGTGGCAGCGAGCGGCGTCGCAGAAAGTATCCCCGACGGACTTTTACCGATGTGTCTGCCGACGTCGTTTGCGGTGTCTCGATAGCTTTTTGCGACGTTGTTTTTGTTTTCGGCGCCGTGTCTGTGCGTCCGAAAAGAGTTAG

Protein sequence

MFAPLKPFTTSAPSKYSTTSAPSKLFATSASPQTFATSVAQNPSATYWDRVRGKYLTTWQRAASQKVSPTDFYRCVCRRRLRCLDSFLRRCFCFRRRVCASEKS*

Homology

[Close]

BLAST of Csa7G274670 vs. TrEMBL
Match: A0A0A0K4F6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G274670 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 4.2e-54
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1


Query: 1   MFAPLKPFTTSAPSKYSTTSAPSKLFATSASPQTFATSVAQNPSATYWDRVRGKYLTTWQ 60
           MFAPLKPFTTSAPSKYSTTSAPSKLFATSASPQTFATSVAQNPSATYWDRVRGKYLTTWQ
Sbjct: 1   MFAPLKPFTTSAPSKYSTTSAPSKLFATSASPQTFATSVAQNPSATYWDRVRGKYLTTWQ 60

Query: 61  RAASQKVSPTDFYRCVCRRRLRCLDSFLRRCFCFRRRVCASEKS 105
           RAASQKVSPTDFYRCVCRRRLRCLDSFLRRCFCFRRRVCASEKS
Sbjct: 61  RAASQKVSPTDFYRCVCRRRLRCLDSFLRRCFCFRRRVCASEKS 104

[Close]

BLAST of Csa7G274670 vs. NCBI nr
Match: gi|700189145|gb|KGN44378.1| (hypothetical protein Csa_7G274670 [Cucumis sativus])

HSP 1 Score: 218.4 bits (555), Expect = 6.0e-54
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1


Query: 1   MFAPLKPFTTSAPSKYSTTSAPSKLFATSASPQTFATSVAQNPSATYWDRVRGKYLTTWQ 60
           MFAPLKPFTTSAPSKYSTTSAPSKLFATSASPQTFATSVAQNPSATYWDRVRGKYLTTWQ
Sbjct: 1   MFAPLKPFTTSAPSKYSTTSAPSKLFATSASPQTFATSVAQNPSATYWDRVRGKYLTTWQ 60

Query: 61  RAASQKVSPTDFYRCVCRRRLRCLDSFLRRCFCFRRRVCASEKS 105
           RAASQKVSPTDFYRCVCRRRLRCLDSFLRRCFCFRRRVCASEKS
Sbjct: 61  RAASQKVSPTDFYRCVCRRRLRCLDSFLRRCFCFRRRVCASEKS 104

The following BLAST results are available for this feature:

BLAST of Csa7G274670 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K4F6_CUCSA	4.2e-54	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G274670 PE=4 SV=1	[more]

BLAST of Csa7G274670 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700189145\|gb\|KGN44378.1\|	6.0e-54	100.00	hypothetical protein Csa_7G274670 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa7G274670.1	Csa7G274670.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa7G274670	CSPI07G11860	Wild cucumber (PI 183967)	cpicuB354

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa7G274670	Melon (DHL92) v3.6.1	cumedB504
Csa7G274670	Watermelon (97103) v2	cuwmbB568
Csa7G274670	Wax gourd	cuwgoB703
Csa7G274670	Cucumber (Gy14) v1	cgycuB348
Csa7G274670	Cucurbita maxima (Rimu)	cmacuB046
Csa7G274670	Cucurbita maxima (Rimu)	cmacuB495
Csa7G274670	Cucurbita moschata (Rifu)	cmocuB036
Csa7G274670	Cucurbita moschata (Rifu)	cmocuB484
Csa7G274670	Melon (DHL92) v3.5.1	cumeB524
Csa7G274670	Watermelon (97103) v1	cuwmB565
Csa7G274670	Cucurbita pepo (Zucchini)	cpecuB471
Csa7G274670	Bottle gourd (USVL1VR-Ls)	culsiB514
Csa7G274670	Cucumber (Gy14) v2	cgybcuB323