Csa7G270570 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa7G270570
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein; contains IPR006460 (Protein of unknown function DUF617, plant)
Location	Chr7 : 9581170 .. 9581394 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGGCGGCGTCCTTAGAATCACCCTTGAATCCGCCACGGCGATGGATTCATGGGGGAGATCGGTTTTGTCGTCCTCAGAGTGGAGTATGTATTATTTCAACGAAAGGAAAGTTAGGTACAGATTGAGACAAGGGACATCAGCGGCAGAGGTGGAGATGTTGTGGGGGTTGGGGAGGGTGGCGGAAGAGGCGGGAGTTATTGAAAGTGAAGATGATTGTTAA

mRNA sequence

ATGAGTGGCGGCGTCCTTAGAATCACCCTTGAATCCGCCACGGCGATGGATTCATGGGGGAGATCGGTTTTGTCGTCCTCAGAGTGGAGTATGTATTATTTCAACGAAAGGAAAGTTAGGTACAGATTGAGACAAGGGACATCAGCGGCAGAGGTGGAGATGTTGTGGGGGTTGGGGAGGGTGGCGGAAGAGGCGGGAGTTATTGAAAGTGAAGATGATTGTTAA

Coding sequence (CDS)

ATGAGTGGCGGCGTCCTTAGAATCACCCTTGAATCCGCCACGGCGATGGATTCATGGGGGAGATCGGTTTTGTCGTCCTCAGAGTGGAGTATGTATTATTTCAACGAAAGGAAAGTTAGGTACAGATTGAGACAAGGGACATCAGCGGCAGAGGTGGAGATGTTGTGGGGGTTGGGGAGGGTGGCGGAAGAGGCGGGAGTTATTGAAAGTGAAGATGATTGTTAA

Protein sequence

MSGGVLRITLESATAMDSWGRSVLSSSEWSMYYFNERKVRYRLRQGTSAAEVEMLWGLGRVAEEAGVIESEDDC*

Homology

[Close]

BLAST of Csa7G270570 vs. TrEMBL
Match: A0A0A0K4D6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G270570 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 5.8e-34
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1


Query: 1  MSGGVLRITLESATAMDSWGRSVLSSSEWSMYYFNERKVRYRLRQGTSAAEVEMLWGLGR 60
          MSGGVLRITLESATAMDSWGRSVLSSSEWSMYYFNERKVRYRLRQGTSAAEVEMLWGLGR
Sbjct: 1  MSGGVLRITLESATAMDSWGRSVLSSSEWSMYYFNERKVRYRLRQGTSAAEVEMLWGLGR 60

Query: 61 VAEEAGVIESEDDC 75
          VAEEAGVIESEDDC
Sbjct: 61 VAEEAGVIESEDDC 74

[Close]

BLAST of Csa7G270570 vs. TrEMBL
Match: A0A0A0KG77_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G499200 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 5.0e-17
Identity = 54/73 (73.97%), Postives = 56/73 (76.71%), Query Frame = 1


Query: 1   MSGGVLRITLESATAMDSWGRSVLSSSEWSMYYFNERKVRYRLRQGTSAAEVEMLWGLGR 60
           M GGVLRI LESAT  +S GRSVLSS  WSMY FN RKV Y LR+G SAAEVE L  LGR
Sbjct: 108 MRGGVLRIALESATTANSGGRSVLSSPAWSMY-FNGRKVGYGLRRGASAAEVETLRRLGR 167

Query: 61  VAEEAGVIESEDD 74
           VAE AGVIE EDD
Sbjct: 168 VAEGAGVIEGEDD 179

[Close]

BLAST of Csa7G270570 vs. NCBI nr
Match: gi|700189130|gb|KGN44363.1| (hypothetical protein Csa_7G270570 [Cucumis sativus])

HSP 1 Score: 151.0 bits (380), Expect = 8.4e-34
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1


Query: 1  MSGGVLRITLESATAMDSWGRSVLSSSEWSMYYFNERKVRYRLRQGTSAAEVEMLWGLGR 60
          MSGGVLRITLESATAMDSWGRSVLSSSEWSMYYFNERKVRYRLRQGTSAAEVEMLWGLGR
Sbjct: 1  MSGGVLRITLESATAMDSWGRSVLSSSEWSMYYFNERKVRYRLRQGTSAAEVEMLWGLGR 60

Query: 61 VAEEAGVIESEDDC 75
          VAEEAGVIESEDDC
Sbjct: 61 VAEEAGVIESEDDC 74

[Close]

BLAST of Csa7G270570 vs. NCBI nr
Match: gi|778730283|ref|XP_011659749.1| (PREDICTED: uncharacterized protein LOC105436257, partial [Cucumis sativus])

HSP 1 Score: 136.0 bits (341), Expect = 2.8e-29
Identity = 67/73 (91.78%), Postives = 68/73 (93.15%), Query Frame = 1


Query: 1   MSGGVLRITLESATAMDSWGRSVLSSSEWSMYYFNERKVRYRLRQGTSAAEVEMLWGLGR 60
           MSGGVLRITLESATAMDSWGRSVLSSSEWSMYYFNERKVRYRLRQGTSAAEVEMLWGLGR
Sbjct: 38  MSGGVLRITLESATAMDSWGRSVLSSSEWSMYYFNERKVRYRLRQGTSAAEVEMLWGLGR 97

Query: 61  VAEEAGVIESEDD 74
           VAEEAG +    D
Sbjct: 98  VAEEAGYLRGNFD 110

[Close]

BLAST of Csa7G270570 vs. NCBI nr
Match: gi|659080021|ref|XP_008440568.1| (PREDICTED: protein MIZU-KUSSEI 1 [Cucumis melo])

HSP 1 Score: 96.3 bits (238), Expect = 2.4e-17
Identity = 55/73 (75.34%), Postives = 57/73 (78.08%), Query Frame = 1


Query: 1   MSGGVLRITLESATAMDSWGRSVLSSSEWSMYYFNERKVRYRLRQGTSAAEVEMLWGLGR 60
           M GGVLRI LESATA +S GRSVLSS  WSMY FN RKV Y LR+G SAAEVE L  LGR
Sbjct: 108 MRGGVLRIALESATAANSGGRSVLSSPAWSMY-FNGRKVGYGLRRGASAAEVETLRRLGR 167

Query: 61  VAEEAGVIESEDD 74
           VAE AGVIE EDD
Sbjct: 168 VAEGAGVIEGEDD 179

[Close]

BLAST of Csa7G270570 vs. NCBI nr
Match: gi|778719086|ref|XP_011657961.1| (PREDICTED: protein MIZU-KUSSEI 1 [Cucumis sativus])

HSP 1 Score: 94.7 bits (234), Expect = 7.1e-17
Identity = 54/73 (73.97%), Postives = 56/73 (76.71%), Query Frame = 1


Query: 1   MSGGVLRITLESATAMDSWGRSVLSSSEWSMYYFNERKVRYRLRQGTSAAEVEMLWGLGR 60
           M GGVLRI LESAT  +S GRSVLSS  WSMY FN RKV Y LR+G SAAEVE L  LGR
Sbjct: 108 MRGGVLRIALESATTANSGGRSVLSSPAWSMY-FNGRKVGYGLRRGASAAEVETLRRLGR 167

Query: 61  VAEEAGVIESEDD 74
           VAE AGVIE EDD
Sbjct: 168 VAEGAGVIEGEDD 179

The following BLAST results are available for this feature:

BLAST of Csa7G270570 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K4D6_CUCSA	5.8e-34	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G270570 PE=4 SV=1	[more]
A0A0A0KG77_CUCSA	5.0e-17	73.97	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G499200 PE=4 SV=1	[more]

BLAST of Csa7G270570 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700189130\|gb\|KGN44363.1\|	8.4e-34	100.00	hypothetical protein Csa_7G270570 [Cucumis sativus]	[more]
gi\|778730283\|ref\|XP_011659749.1\|	2.8e-29	91.78	PREDICTED: uncharacterized protein LOC105436257, partial [Cucumis sativus]	[more]
gi\|659080021\|ref\|XP_008440568.1\|	2.4e-17	75.34	PREDICTED: protein MIZU-KUSSEI 1 [Cucumis melo]	[more]
gi\|778719086\|ref\|XP_011657961.1\|	7.1e-17	73.97	PREDICTED: protein MIZU-KUSSEI 1 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006460	MIZ1-like_pln

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU115059	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa7G270570.1	Csa7G270570.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU115059	CU115059	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006460	Protein of unknown function DUF617, plant	PFAM	PF04759	DUF617	coord: 1..72 score: 3.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa7G270570	CSPI07G11730	Wild cucumber (PI 183967)	cpicuB354
Csa7G270570	Cucsa.240580	Cucumber (Gy14) v1	cgycuB348

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa7G270570	Cucurbita maxima (Rimu)	cmacuB495
Csa7G270570	Cucurbita moschata (Rifu)	cmocuB484
Csa7G270570	Cucumber (Gy14) v2	cgybcuB323