Csa7G221860 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa7G221860
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr7 : 7939179 .. 7939744 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCGAAAAGAAATATAGGGTTTAACTAAGATTTTGGGTCACGTAGTTGGGGACGGCAGCTTCAGCCTTCGACCATTCCGATTAGACTCCCCAAATTTCTCATTCAACATGGCTTTCAAGACCAACACCGTTGCTTCCGCTTCTTCTGCTGTTGCAATTTCTTCCGAAGTTAAGCTCCTTTCCTCTCTATTTACTCACTCTCCCGCCGTTCTATCATCAAATCCCCAAATTTCCTCTGCAAATAATCCCAAGTCCCTACATGCATCACCGGAACGGATTTCCTTTCAACACGGGATTCCGATGTTCCTACATAAGTGCAAGACAGGTAGTATCTCTGTAACTCAAGCACACCAATTCTTTGACCTAATGATGCGTTCAATCTTTTCTTTCAATCGTTTACTTGCTGGACTTGCTAAGATTGAGCATTACTCTCAAGTGTTTTCTCTCTATAAACAAATGCACCTTGCTGGACTTTGGCCCGATTTACTCACACTGAATATATTGATTAATTGCCTTTGTAATGTGAATCGGATTAACGAAGGTCTCGCGGCCATGGCGGGGATTATGA

mRNA sequence

ATGGCTTTCAAGACCAACACCGTTGCTTCCGCTTCTTCTGCTGTTGCAATTTCTTCCGAAGTTAAGCTCCTTTCCTCTCTATTTACTCACTCTCCCGCCGTTCTATCATCAAATCCCCAAATTTCCTCTGCAAATAATCCCAAGTCCCTACATGCATCACCGGAACGGATTTCCTTTCAACACGGGATTCCGATGTTCCTACATAAGTGCAAGACAGGTAGTATCTCTGTAACTCAAGCACACCAATTCTTTGACCTAATGATGCGTTCAATCTTTTCTTTCAATCGTTTACTTGCTGGACTTGCTAAGATTGAGCATTACTCTCAAGTCTCGCGGCCATGGCGGGGATTATGA

Coding sequence (CDS)

ATGGCTTTCAAGACCAACACCGTTGCTTCCGCTTCTTCTGCTGTTGCAATTTCTTCCGAAGTTAAGCTCCTTTCCTCTCTATTTACTCACTCTCCCGCCGTTCTATCATCAAATCCCCAAATTTCCTCTGCAAATAATCCCAAGTCCCTACATGCATCACCGGAACGGATTTCCTTTCAACACGGGATTCCGATGTTCCTACATAAGTGCAAGACAGGTAGTATCTCTGTAACTCAAGCACACCAATTCTTTGACCTAATGATGCGTTCAATCTTTTCTTTCAATCGTTTACTTGCTGGACTTGCTAAGATTGAGCATTACTCTCAAGTCTCGCGGCCATGGCGGGGATTATGA

Protein sequence

MAFKTNTVASASSAVAISSEVKLLSSLFTHSPAVLSSNPQISSANNPKSLHASPERISFQHGIPMFLHKCKTGSISVTQAHQFFDLMMRSIFSFNRLLAGLAKIEHYSQVSRPWRGL*

Homology

[Close]

BLAST of Csa7G221860 vs. TrEMBL
Match: A0A0A0K3D6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G221860 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 5.3e-58
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 1


Query: 1   MAFKTNTVASASSAVAISSEVKLLSSLFTHSPAVLSSNPQISSANNPKSLHASPERISFQ 60
           MAFKTNTVASASSAVAISSEVKLLSSLFTHSPAVLSSNPQISSANNPKSLHASPERISFQ
Sbjct: 1   MAFKTNTVASASSAVAISSEVKLLSSLFTHSPAVLSSNPQISSANNPKSLHASPERISFQ 60

Query: 61  HGIPMFLHKCKTGSISVTQAHQFFDLMMRSIFSFNRLLAGLAKIEHYSQVSRPWRGL 118
           HGIPMFLHKCKTGSISVTQAHQFFDLMMRSIFSFNRLLAGLAKIEHYSQVSRPWRGL
Sbjct: 61  HGIPMFLHKCKTGSISVTQAHQFFDLMMRSIFSFNRLLAGLAKIEHYSQVSRPWRGL 117

[Close]

BLAST of Csa7G221860 vs. TrEMBL
Match: A0A0A0K7C1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G230920 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 8.0e-38
Identity = 83/110 (75.45%), Postives = 92/110 (83.64%), Query Frame = 1


Query: 1   MAFKTNTVASASSAVAISSEVKLLSSLFTHSPAVLSSNPQISSANNPKSLHASPERISFQ 60
           M FK N+VASASS VAISS+ KL SSLFTHSP + SSNPQISSAN+PKSLHA  ERIS Q
Sbjct: 1   MTFKANSVASASSIVAISSKAKLFSSLFTHSPTIPSSNPQISSANHPKSLHALSERISLQ 60

Query: 61  HGIPMFLHKCKTGSISVTQAHQFFDLMMRSIFSFNRLLAGLAKIEHYSQV 111
           HG+PMF+H CK G+I+ TQA QFFDLMMRSI SFN LL  LAKI+HYSQV
Sbjct: 61  HGLPMFIHNCKKGNITSTQALQFFDLMMRSIISFNLLLGALAKIKHYSQV 110

[Close]

BLAST of Csa7G221860 vs. TrEMBL
Match: A0A0A0K5F6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G374710 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.4e-21
Identity = 67/119 (56.30%), Postives = 79/119 (66.39%), Query Frame = 1


Query: 1   MAFKTNTVASASSAVAISSEVKLLSSLFTHSPAVLSSNPQISSANNPKSLHASPER---- 60
           MA  + TV SASS V    +  L SSLFTHSP + SSNP  SSA + KSL+ SP+     
Sbjct: 1   MASTSKTVPSASSIV----KPNLSSSLFTHSPTIPSSNPHFSSAVHHKSLNVSPQNFNTP 60

Query: 61  ISFQHGIPMFLHKCKTGSISVTQAHQFFDLMMRS-----IFSFNRLLAGLAKIEHYSQV 111
           ISFQ  + MFLH CKTG+I+ TQA QFF LMM S     + SF  LL+GLAKI+HYSQV
Sbjct: 61  ISFQQQLSMFLHNCKTGNITATQAFQFFHLMMYSNPTPPLSSFTHLLSGLAKIKHYSQV 115

[Close]

BLAST of Csa7G221860 vs. TrEMBL
Match: A0A0A0K784_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G380110 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.5e-15
Identity = 51/95 (53.68%), Postives = 61/95 (64.21%), Query Frame = 1


Query: 24  LSSLFTHSPAVLSSNPQISSANNPKSLHASP---ERISFQHGIPMFLHKCKTGSISVTQA 83
           LS L THS  + SS PQ SS ++P  +  +    E ISF H + +FL  CKTG+I+  QA
Sbjct: 16  LSPLSTHSSTIPSSIPQTSSTHHPNPILPAAFNREEISFHHPLSLFLRNCKTGNITAIQA 75

Query: 84  HQFFDLMMRS-----IFSFNRLLAGLAKIEHYSQV 111
             FFDLMMRS     I SFNRLL GLAKI HYSQ+
Sbjct: 76  FHFFDLMMRSHPIPPISSFNRLLGGLAKINHYSQL 110

[Close]

BLAST of Csa7G221860 vs. TrEMBL
Match: A0A0A0K5M0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G387770 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.4e-13
Identity = 52/95 (54.74%), Postives = 62/95 (65.26%), Query Frame = 1


Query: 24  LSSLFTHSPAVLSSNPQISSANNPKS-LHASPER--ISFQHGIPMFLHKCKTGSISVTQA 83
           LS L T S  + SS PQ SS N+P + L A+  R  ISF H + +FL  CKTG+I+ TQA
Sbjct: 16  LSPLCTLSSTIPSSIPQTSSTNHPNTVLPAAFNRKGISFHHPLSLFLRNCKTGNITATQA 75

Query: 84  HQFFDLMMRS-----IFSFNRLLAGLAKIEHYSQV 111
             FFDLM+RS     I SFN LL GLAKI HYSQ+
Sbjct: 76  FHFFDLMLRSYPIPPISSFNCLLGGLAKINHYSQL 110

[Close]

BLAST of Csa7G221860 vs. NCBI nr
Match: gi|700188972|gb|KGN44205.1| (hypothetical protein Csa_7G221860 [Cucumis sativus])

HSP 1 Score: 231.5 bits (589), Expect = 7.7e-58
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 1


Query: 1   MAFKTNTVASASSAVAISSEVKLLSSLFTHSPAVLSSNPQISSANNPKSLHASPERISFQ 60
           MAFKTNTVASASSAVAISSEVKLLSSLFTHSPAVLSSNPQISSANNPKSLHASPERISFQ
Sbjct: 1   MAFKTNTVASASSAVAISSEVKLLSSLFTHSPAVLSSNPQISSANNPKSLHASPERISFQ 60

Query: 61  HGIPMFLHKCKTGSISVTQAHQFFDLMMRSIFSFNRLLAGLAKIEHYSQVSRPWRGL 118
           HGIPMFLHKCKTGSISVTQAHQFFDLMMRSIFSFNRLLAGLAKIEHYSQVSRPWRGL
Sbjct: 61  HGIPMFLHKCKTGSISVTQAHQFFDLMMRSIFSFNRLLAGLAKIEHYSQVSRPWRGL 117

[Close]

BLAST of Csa7G221860 vs. NCBI nr
Match: gi|449444222|ref|XP_004139874.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g62720-like isoform X1 [Cucumis sativus])

HSP 1 Score: 215.3 bits (547), Expect = 5.7e-53
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1


Query: 1   MAFKTNTVASASSAVAISSEVKLLSSLFTHSPAVLSSNPQISSANNPKSLHASPERISFQ 60
           MAFKTNTVASASSAVAISSEVKLLSSLFTHSPAVLSSNPQISSANNPKSLHASPERISFQ
Sbjct: 1   MAFKTNTVASASSAVAISSEVKLLSSLFTHSPAVLSSNPQISSANNPKSLHASPERISFQ 60

Query: 61  HGIPMFLHKCKTGSISVTQAHQFFDLMMRSIFSFNRLLAGLAKIEHYSQV 111
           HGIPMFLHKCKTGSISVTQAHQFFDLMMRSIFSFNRLLAGLAKIEHYSQV
Sbjct: 61  HGIPMFLHKCKTGSISVTQAHQFFDLMMRSIFSFNRLLAGLAKIEHYSQV 110

[Close]

BLAST of Csa7G221860 vs. NCBI nr
Match: gi|778725767|ref|XP_011659000.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g62720-like isoform X2 [Cucumis sativus])

HSP 1 Score: 215.3 bits (547), Expect = 5.7e-53
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1


Query: 1   MAFKTNTVASASSAVAISSEVKLLSSLFTHSPAVLSSNPQISSANNPKSLHASPERISFQ 60
           MAFKTNTVASASSAVAISSEVKLLSSLFTHSPAVLSSNPQISSANNPKSLHASPERISFQ
Sbjct: 1   MAFKTNTVASASSAVAISSEVKLLSSLFTHSPAVLSSNPQISSANNPKSLHASPERISFQ 60

Query: 61  HGIPMFLHKCKTGSISVTQAHQFFDLMMRSIFSFNRLLAGLAKIEHYSQV 111
           HGIPMFLHKCKTGSISVTQAHQFFDLMMRSIFSFNRLLAGLAKIEHYSQV
Sbjct: 61  HGIPMFLHKCKTGSISVTQAHQFFDLMMRSIFSFNRLLAGLAKIEHYSQV 110

[Close]

BLAST of Csa7G221860 vs. NCBI nr
Match: gi|659092741|ref|XP_008447194.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g62720-like [Cucumis melo])

HSP 1 Score: 199.5 bits (506), Expect = 3.2e-48
Identity = 102/110 (92.73%), Postives = 104/110 (94.55%), Query Frame = 1


Query: 1   MAFKTNTVASASSAVAISSEVKLLSSLFTHSPAVLSSNPQISSANNPKSLHASPERISFQ 60
           MAFKTNTV+SA+SAVAISSE KL SSLFTHSP V SSNPQISSANN KSLHASPER SFQ
Sbjct: 1   MAFKTNTVSSATSAVAISSEAKLFSSLFTHSPPVPSSNPQISSANNSKSLHASPERNSFQ 60

Query: 61  HGIPMFLHKCKTGSISVTQAHQFFDLMMRSIFSFNRLLAGLAKIEHYSQV 111
           HGIPMFLHKCKTGSISVTQAHQFFDLMMRSIFSFNRLLAGLAKIEHYSQV
Sbjct: 61  HGIPMFLHKCKTGSISVTQAHQFFDLMMRSIFSFNRLLAGLAKIEHYSQV 110

[Close]

BLAST of Csa7G221860 vs. NCBI nr
Match: gi|700188984|gb|KGN44217.1| (hypothetical protein Csa_7G230920 [Cucumis sativus])

HSP 1 Score: 164.5 bits (415), Expect = 1.2e-37
Identity = 83/110 (75.45%), Postives = 92/110 (83.64%), Query Frame = 1


Query: 1   MAFKTNTVASASSAVAISSEVKLLSSLFTHSPAVLSSNPQISSANNPKSLHASPERISFQ 60
           M FK N+VASASS VAISS+ KL SSLFTHSP + SSNPQISSAN+PKSLHA  ERIS Q
Sbjct: 1   MTFKANSVASASSIVAISSKAKLFSSLFTHSPTIPSSNPQISSANHPKSLHALSERISLQ 60

Query: 61  HGIPMFLHKCKTGSISVTQAHQFFDLMMRSIFSFNRLLAGLAKIEHYSQV 111
           HG+PMF+H CK G+I+ TQA QFFDLMMRSI SFN LL  LAKI+HYSQV
Sbjct: 61  HGLPMFIHNCKKGNITSTQALQFFDLMMRSIISFNLLLGALAKIKHYSQV 110

The following BLAST results are available for this feature:

BLAST of Csa7G221860 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K3D6_CUCSA	5.3e-58	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G221860 PE=4 SV=1	[more]
A0A0A0K7C1_CUCSA	8.0e-38	75.45	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G230920 PE=4 SV=1	[more]
A0A0A0K5F6_CUCSA	1.4e-21	56.30	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G374710 PE=4 SV=1	[more]
A0A0A0K784_CUCSA	2.5e-15	53.68	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G380110 PE=4 SV=1	[more]
A0A0A0K5M0_CUCSA	1.4e-13	54.74	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G387770 PE=4 SV=1	[more]

BLAST of Csa7G221860 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700188972\|gb\|KGN44205.1\|	7.7e-58	100.00	hypothetical protein Csa_7G221860 [Cucumis sativus]	[more]
gi\|449444222\|ref\|XP_004139874.1\|	5.7e-53	100.00	PREDICTED: pentatricopeptide repeat-containing protein At1g62720-like isoform X1...	[more]
gi\|778725767\|ref\|XP_011659000.1\|	5.7e-53	100.00	PREDICTED: pentatricopeptide repeat-containing protein At1g62720-like isoform X2...	[more]
gi\|659092741\|ref\|XP_008447194.1\|	3.2e-48	92.73	PREDICTED: pentatricopeptide repeat-containing protein At1g62720-like [Cucumis m...	[more]
gi\|700188984\|gb\|KGN44217.1\|	1.2e-37	75.45	hypothetical protein Csa_7G230920 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa7G221860.1	Csa7G221860.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa7G221860	MELO3C012708	Melon (DHL92) v3.5.1	cumeB533
Csa7G221860	MELO3C012708.2	Melon (DHL92) v3.6.1	cumedB512
Csa7G221860	CSPI07G10190	Wild cucumber (PI 183967)	cpicuB354
Csa7G221860	CSPI07G15960	Wild cucumber (PI 183967)	cpicuB357
Csa7G221860	CsGy7G009630	Cucumber (Gy14) v2	cgybcuB323

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Csa7G221860	Csa7G380110	Cucumber (Chinese Long) v2	cucuB175

The following block(s) are covering this gene:


Gene	Organism	Block
Csa7G221860	Cucumber (Gy14) v1	cgycuB218