Csa7G212120 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa7G212120
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr7 : 7593180 .. 7593428 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCATTCCTACAACAGTTTGAATTCAAGGCCATGTTTCTGGAAGAAGATTTCGTGGAACAAAACACGTTCCATGAAAGGAAAACTACAAAGGAAACAGAAAAAAGATTTGAAAAAGGAGAATGCTCGAGACAAGTTGAGCATACGAATATAGAAGACTTGTTGAGCATAATTATGGCCAGCAATGAAGCATTGAACTGGAAGATGGAGAAACTGCTTGTGGAGGCTGAAGGGATAAAAAACGGTTGA

mRNA sequence

ATGTCATTCCTACAACAGTTTGAATTCAAGGCCATGTTTCTGGAAGAAGATTTCGTGGAACAAAACACGTTCCATGAAAGGAAAACTACAAAGGAAACAGAAAAAAGATTTGAAAAAGGAGAATGCTCGAGACAAGTTGAGCATACGAATATAGAAGACTTGTTGAGCATAATTATGGCCAGCAATGAAGCATTGAACTGGAAGATGGAGAAACTGCTTGTGGAGGCTGAAGGGATAAAAAACGGTTGA

Coding sequence (CDS)

ATGTCATTCCTACAACAGTTTGAATTCAAGGCCATGTTTCTGGAAGAAGATTTCGTGGAACAAAACACGTTCCATGAAAGGAAAACTACAAAGGAAACAGAAAAAAGATTTGAAAAAGGAGAATGCTCGAGACAAGTTGAGCATACGAATATAGAAGACTTGTTGAGCATAATTATGGCCAGCAATGAAGCATTGAACTGGAAGATGGAGAAACTGCTTGTGGAGGCTGAAGGGATAAAAAACGGTTGA

Protein sequence

MSFLQQFEFKAMFLEEDFVEQNTFHERKTTKETEKRFEKGECSRQVEHTNIEDLLSIIMASNEALNWKMEKLLVEAEGIKNG*

Homology

[Close]

BLAST of Csa7G212120 vs. TrEMBL
Match: A0A0A0K3B0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G212120 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 1.1e-38
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1


Query: 1  MSFLQQFEFKAMFLEEDFVEQNTFHERKTTKETEKRFEKGECSRQVEHTNIEDLLSIIMA 60
          MSFLQQFEFKAMFLEEDFVEQNTFHERKTTKETEKRFEKGECSRQVEHTNIEDLLSIIMA
Sbjct: 1  MSFLQQFEFKAMFLEEDFVEQNTFHERKTTKETEKRFEKGECSRQVEHTNIEDLLSIIMA 60

Query: 61 SNEALNWKMEKLLVEAEGIKNG 83
          SNEALNWKMEKLLVEAEGIKNG
Sbjct: 61 SNEALNWKMEKLLVEAEGIKNG 82

[Close]

BLAST of Csa7G212120 vs. NCBI nr
Match: gi|700188937|gb|KGN44170.1| (hypothetical protein Csa_7G212120 [Cucumis sativus])

HSP 1 Score: 166.8 bits (421), Expect = 1.6e-38
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1


Query: 1  MSFLQQFEFKAMFLEEDFVEQNTFHERKTTKETEKRFEKGECSRQVEHTNIEDLLSIIMA 60
          MSFLQQFEFKAMFLEEDFVEQNTFHERKTTKETEKRFEKGECSRQVEHTNIEDLLSIIMA
Sbjct: 1  MSFLQQFEFKAMFLEEDFVEQNTFHERKTTKETEKRFEKGECSRQVEHTNIEDLLSIIMA 60

Query: 61 SNEALNWKMEKLLVEAEGIKNG 83
          SNEALNWKMEKLLVEAEGIKNG
Sbjct: 61 SNEALNWKMEKLLVEAEGIKNG 82

[Close]

BLAST of Csa7G212120 vs. NCBI nr
Match: gi|659129587|ref|XP_008464748.1| (PREDICTED: uncharacterized protein LOC103502558 isoform X1 [Cucumis melo])

HSP 1 Score: 65.9 bits (159), Expect = 3.9e-08
Identity = 39/82 (47.56%), Postives = 53/82 (64.63%), Query Frame = 1


Query: 6   QFEFKAMFLEEDFVEQNTFHERKTTKETEKRFEKGECSRQVEHTN--IEDLL----SIIM 65
           QF+F+AMF EEDFVE+ TFHE    +ET   FE+GE SRQ E +N  I D       +I+
Sbjct: 88  QFKFEAMF-EEDFVERRTFHEYVMREETNVTFERGESSRQGEASNKKIPDYFLKFQELIL 147

Query: 66  ASNEALNWKMEKLLVEAEGIKN 82
            +NE LN K++ L+ E E +K+
Sbjct: 148 TNNECLNNKLDLLIKEVESLKD 168

The following BLAST results are available for this feature:

BLAST of Csa7G212120 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K3B0_CUCSA	1.1e-38	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G212120 PE=4 SV=1	[more]

BLAST of Csa7G212120 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700188937\|gb\|KGN44170.1\|	1.6e-38	100.00	hypothetical protein Csa_7G212120 [Cucumis sativus]	[more]
gi\|659129587\|ref\|XP_008464748.1\|	3.9e-08	47.56	PREDICTED: uncharacterized protein LOC103502558 isoform X1 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa7G212120.1	Csa7G212120.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa7G212120	Cucumber (Gy14) v1	cgycuB127
Csa7G212120	Cucurbita maxima (Rimu)	cmacuB040
Csa7G212120	Cucurbita maxima (Rimu)	cmacuB499
Csa7G212120	Cucurbita moschata (Rifu)	cmocuB028
Csa7G212120	Cucurbita moschata (Rifu)	cmocuB487
Csa7G212120	Melon (DHL92) v3.5.1	cumeB534
Csa7G212120	Watermelon (Charleston Gray)	cuwcgB518
Csa7G212120	Watermelon (97103) v1	cuwmB555
Csa7G212120	Cucurbita pepo (Zucchini)	cpecuB587
Csa7G212120	Cucurbita pepo (Zucchini)	cpecuB799
Csa7G212120	Bottle gourd (USVL1VR-Ls)	culsiB510
Csa7G212120	Cucumber (Gy14) v2	cgybcuB323
Csa7G212120	Melon (DHL92) v3.6.1	cumedB513
Csa7G212120	Silver-seed gourd	carcuB0899
Csa7G212120	Silver-seed gourd	carcuB0922
Csa7G212120	Watermelon (97103) v2	cuwmbB562
Csa7G212120	Wax gourd	cuwgoB692