Csa7G207520 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa7G207520
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr7 : 7390699 .. 7390956 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGTCAAAAATATCAAGACAGATGGAACTTGTCTTGATGAACCTTCCTCAACGAGAAGAGGAAAAGAGAGGAGATGATCGAAGAAGACCTAGCCAAATAGCGGTGGGAAGAAGTTTTAGAAAAAAAATCAGAGGCAATTGGAACTCACAGGGGAGGGGGATGGATCACCTAGTTTTTCAAACTCCAAGATTCCAAAAACCCATCCAAGAGGTTCACGACTCTGAATTTTTTTTCATTCAAAAGAGAAGGCGATAG

mRNA sequence

ATGGTGTCAAAAATATCAAGACAGATGGAACTTGTCTTGATGAACCTTCCTCAACGAGAAGAGGAAAAGAGAGGAGATGATCGAAGAAGACCTAGCCAAATAGCGGTGGGAAGAAGTTTTAGAAAAAAAATCAGAGGCAATTGGAACTCACAGGGGAGGGGGATGGATCACCTAGTTTTTCAAACTCCAAGATTCCAAAAACCCATCCAAGAGGTTCACGACTCTGAATTTTTTTTCATTCAAAAGAGAAGGCGATAG

Coding sequence (CDS)

ATGGTGTCAAAAATATCAAGACAGATGGAACTTGTCTTGATGAACCTTCCTCAACGAGAAGAGGAAAAGAGAGGAGATGATCGAAGAAGACCTAGCCAAATAGCGGTGGGAAGAAGTTTTAGAAAAAAAATCAGAGGCAATTGGAACTCACAGGGGAGGGGGATGGATCACCTAGTTTTTCAAACTCCAAGATTCCAAAAACCCATCCAAGAGGTTCACGACTCTGAATTTTTTTTCATTCAAAAGAGAAGGCGATAG

Protein sequence

MVSKISRQMELVLMNLPQREEEKRGDDRRRPSQIAVGRSFRKKIRGNWNSQGRGMDHLVFQTPRFQKPIQEVHDSEFFFIQKRRR*

Homology

[Close]

BLAST of Csa7G207520 vs. TrEMBL
Match: A0A0A0K5C7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G207520 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 4.3e-41
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 1


Query: 1  MVSKISRQMELVLMNLPQREEEKRGDDRRRPSQIAVGRSFRKKIRGNWNSQGRGMDHLVF 60
          MVSKISRQMELVLMNLPQREEEKRGDDRRRPSQIAVGRSFRKKIRGNWNSQGRGMDHLVF
Sbjct: 1  MVSKISRQMELVLMNLPQREEEKRGDDRRRPSQIAVGRSFRKKIRGNWNSQGRGMDHLVF 60

Query: 61 QTPRFQKPIQEVHDSEFFFIQKRRR 86
          QTPRFQKPIQEVHDSEFFFIQKRRR
Sbjct: 61 QTPRFQKPIQEVHDSEFFFIQKRRR 85

[Close]

BLAST of Csa7G207520 vs. NCBI nr
Match: gi|700188921|gb|KGN44154.1| (hypothetical protein Csa_7G207520 [Cucumis sativus])

HSP 1 Score: 174.9 bits (442), Expect = 6.2e-41
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 1


Query: 1  MVSKISRQMELVLMNLPQREEEKRGDDRRRPSQIAVGRSFRKKIRGNWNSQGRGMDHLVF 60
          MVSKISRQMELVLMNLPQREEEKRGDDRRRPSQIAVGRSFRKKIRGNWNSQGRGMDHLVF
Sbjct: 1  MVSKISRQMELVLMNLPQREEEKRGDDRRRPSQIAVGRSFRKKIRGNWNSQGRGMDHLVF 60

Query: 61 QTPRFQKPIQEVHDSEFFFIQKRRR 86
          QTPRFQKPIQEVHDSEFFFIQKRRR
Sbjct: 61 QTPRFQKPIQEVHDSEFFFIQKRRR 85

The following BLAST results are available for this feature:

BLAST of Csa7G207520 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K5C7_CUCSA	4.3e-41	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G207520 PE=4 SV=1	[more]

BLAST of Csa7G207520 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700188921\|gb\|KGN44154.1\|	6.2e-41	100.00	hypothetical protein Csa_7G207520 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa7G207520.1	Csa7G207520.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa7G207520	Watermelon (97103) v2	cuwmbB562
Csa7G207520	Wax gourd	cuwgoB692
Csa7G207520	Cucurbita maxima (Rimu)	cmacuB493
Csa7G207520	Cucurbita moschata (Rifu)	cmocuB483
Csa7G207520	Melon (DHL92) v3.5.1	cumeB534
Csa7G207520	Watermelon (Charleston Gray)	cuwcgB518
Csa7G207520	Watermelon (97103) v1	cuwmB555
Csa7G207520	Bottle gourd (USVL1VR-Ls)	culsiB510
Csa7G207520	Cucumber (Gy14) v2	cgybcuB323
Csa7G207520	Melon (DHL92) v3.6.1	cumedB513