Csa7G197300 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa7G197300
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr7 : 7096904 .. 7097317 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTCTCGTTTTCGCATTCCGTATGATGTCCTTGCGTTTATTTTTATGGTGGAGCTAATTGTCTCCAGGGTGAAGAAAAGCGGCGTTTTTGCTTGTTTGAAAGCCAGAGTGTATAGCTCGTCGGGTCCTATTCGGTACATTCCAAAAGGGTCTTCAAATGATGAGAAATCAAGAACACATTTGACACCGGAAATTGTGAATGGAAACGATTTCAGTAGTGGGCTGGATGTTAATGCATGGAGGATTGAGGTTAAACCTAGTGCAGTACCGAGAAGTAATTTTAATGATACATTGCGTGATCAAAATCAGTATGAGAAGAAGAACTACTCTGCTGGTGGAAGCATGCTAGGTATCTGTATGGAGCTTTTTAATTCGTTGAAACCGTTATGTGTGTTTACCATGTTGAATTGA

mRNA sequence

ATGGATTCTCGTTTTCGCATTCCGTATGATGTCCTTGCGTTTATTTTTATGGTGGAGCTAATTGTCTCCAGGGTGAAGAAAAGCGGCGTTTTTGCTTGTTTGAAAGCCAGAGTGTATAGCTCGTCGGGTCCTATTCGGTACATTCCAAAAGGGTCTTCAAATGATGAGAAATCAAGAACACATTTGACACCGGAAATTGTGAATGGAAACGATTTCAGTAGTGGGCTGGATGTTAATGCATGGAGGATTGAGGTTAAACCTAGTGCAGTACCGAGAAGTAATTTTAATGATACATTGCGTGATCAAAATCAGTATGAGAAGAAGAACTACTCTGCTGGTGGAAGCATGCTAGGTATCTGTATGGAGCTTTTTAATTCGTTGAAACCGTTATGTGTGTTTACCATGTTGAATTGA

Coding sequence (CDS)

ATGGATTCTCGTTTTCGCATTCCGTATGATGTCCTTGCGTTTATTTTTATGGTGGAGCTAATTGTCTCCAGGGTGAAGAAAAGCGGCGTTTTTGCTTGTTTGAAAGCCAGAGTGTATAGCTCGTCGGGTCCTATTCGGTACATTCCAAAAGGGTCTTCAAATGATGAGAAATCAAGAACACATTTGACACCGGAAATTGTGAATGGAAACGATTTCAGTAGTGGGCTGGATGTTAATGCATGGAGGATTGAGGTTAAACCTAGTGCAGTACCGAGAAGTAATTTTAATGATACATTGCGTGATCAAAATCAGTATGAGAAGAAGAACTACTCTGCTGGTGGAAGCATGCTAGGTATCTGTATGGAGCTTTTTAATTCGTTGAAACCGTTATGTGTGTTTACCATGTTGAATTGA

Protein sequence

MDSRFRIPYDVLAFIFMVELIVSRVKKSGVFACLKARVYSSSGPIRYIPKGSSNDEKSRTHLTPEIVNGNDFSSGLDVNAWRIEVKPSAVPRSNFNDTLRDQNQYEKKNYSAGGSMLGICMELFNSLKPLCVFTMLN*
Homology
[Close]
BLAST of Csa7G197300 vs. TrEMBL
Match: A0A0A0K741_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G197300 PE=4 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 4.5e-72
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 1 

Query: 1   MDSRFRIPYDVLAFIFMVELIVSRVKKSGVFACLKARVYSSSGPIRYIPKGSSNDEKSRT 60
           MDSRFRIPYDVLAFIFMVELIVSRVKKSGVFACLKARVYSSSGPIRYIPKGSSNDEKSRT
Sbjct: 1   MDSRFRIPYDVLAFIFMVELIVSRVKKSGVFACLKARVYSSSGPIRYIPKGSSNDEKSRT 60

Query: 61  HLTPEIVNGNDFSSGLDVNAWRIEVKPSAVPRSNFNDTLRDQNQYEKKNYSAGGSMLGIC 120
           HLTPEIVNGNDFSSGLDVNAWRIEVKPSAVPRSNFNDTLRDQNQYEKKNYSAGGSMLGIC
Sbjct: 61  HLTPEIVNGNDFSSGLDVNAWRIEVKPSAVPRSNFNDTLRDQNQYEKKNYSAGGSMLGIC 120

Query: 121 MELFNSLKPLCVFTMLN 138
           MELFNSLKPLCVFTMLN
Sbjct: 121 MELFNSLKPLCVFTMLN 137

[Close]
BLAST of Csa7G197300 vs. NCBI nr
Match: gi|700188889|gb|KGN44122.1| (hypothetical protein Csa_7G197300 [Cucumis sativus])

HSP 1 Score: 278.5 bits (711), Expect = 6.4e-72
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 1 

Query: 1   MDSRFRIPYDVLAFIFMVELIVSRVKKSGVFACLKARVYSSSGPIRYIPKGSSNDEKSRT 60
           MDSRFRIPYDVLAFIFMVELIVSRVKKSGVFACLKARVYSSSGPIRYIPKGSSNDEKSRT
Sbjct: 1   MDSRFRIPYDVLAFIFMVELIVSRVKKSGVFACLKARVYSSSGPIRYIPKGSSNDEKSRT 60

Query: 61  HLTPEIVNGNDFSSGLDVNAWRIEVKPSAVPRSNFNDTLRDQNQYEKKNYSAGGSMLGIC 120
           HLTPEIVNGNDFSSGLDVNAWRIEVKPSAVPRSNFNDTLRDQNQYEKKNYSAGGSMLGIC
Sbjct: 61  HLTPEIVNGNDFSSGLDVNAWRIEVKPSAVPRSNFNDTLRDQNQYEKKNYSAGGSMLGIC 120

Query: 121 MELFNSLKPLCVFTMLN 138
           MELFNSLKPLCVFTMLN
Sbjct: 121 MELFNSLKPLCVFTMLN 137

[Close]
BLAST of Csa7G197300 vs. NCBI nr
Match: gi|449444022|ref|XP_004139774.1| (PREDICTED: uncharacterized protein LOC101220193 [Cucumis sativus])

HSP 1 Score: 196.8 bits (499), Expect = 2.4e-47
Identity = 96/100 (96.00%), Postives = 98/100 (98.00%), Query Frame = 1 

Query: 20  LIVSRVKKSGVFACLKARVYSSSGPIRYIPKGSSNDEKSRTHLTPEIVNGNDFSSGLDVN 79
           L +S VKKSGVFACLKARVYSSSGPIRYIPKGSSNDEKSRTHLTPEIVNGNDFSSGLDVN
Sbjct: 20  LSISWVKKSGVFACLKARVYSSSGPIRYIPKGSSNDEKSRTHLTPEIVNGNDFSSGLDVN 79

Query: 80  AWRIEVKPSAVPRSNFNDTLRDQNQYEKKNYSAGGSMLGI 120
           AWRIEVKPSAVPRSNFNDTLRDQNQYEKKNYSAGGSMLG+
Sbjct: 80  AWRIEVKPSAVPRSNFNDTLRDQNQYEKKNYSAGGSMLGL 119

[Close]
BLAST of Csa7G197300 vs. NCBI nr
Match: gi|659093896|ref|XP_008447776.1| (PREDICTED: uncharacterized protein LOC103490166 isoform X2 [Cucumis melo])

HSP 1 Score: 171.8 bits (434), Expect = 8.4e-40
Identity = 90/101 (89.11%), Postives = 92/101 (91.09%), Query Frame = 1 

Query: 20  LIVSRVKKSGVFACLKARVYSSSGPIRYIPKGSSNDEKSRTHLTPEIVNGNDFSSGLDVN 79
           L  S VKKSGVFACLK RVYSSSGP+RYIPKGSSNDEKSRTHLTPEIVNGNDFSSGLDVN
Sbjct: 20  LSTSWVKKSGVFACLKGRVYSSSGPVRYIPKGSSNDEKSRTHLTPEIVNGNDFSSGLDVN 79

Query: 80  AWRIEVK-PSAVPRSNFNDTLRDQNQYEKKNYSAGGSMLGI 120
           A RIEVK  S VPRSNFNDTLRDQNQYE KNYSAGGSMLG+
Sbjct: 80  ARRIEVKHRSEVPRSNFNDTLRDQNQYE-KNYSAGGSMLGL 119

[Close]
BLAST of Csa7G197300 vs. NCBI nr
Match: gi|659093894|ref|XP_008447775.1| (PREDICTED: uncharacterized protein LOC103490166 isoform X1 [Cucumis melo])

HSP 1 Score: 171.0 bits (432), Expect = 1.4e-39
Identity = 90/100 (90.00%), Postives = 91/100 (91.00%), Query Frame = 1 

Query: 20  LIVSRVKKSGVFACLKARVYSSSGPIRYIPKGSSNDEKSRTHLTPEIVNGNDFSSGLDVN 79
           L  S VKKSGVFACLK RVYSSSGP+RYIPKGSSNDEKSRTHLTPEIVNGNDFSSGLDVN
Sbjct: 20  LSTSWVKKSGVFACLKGRVYSSSGPVRYIPKGSSNDEKSRTHLTPEIVNGNDFSSGLDVN 79

Query: 80  AWRIEVK-PSAVPRSNFNDTLRDQNQYEKKNYSAGGSMLG 119
           A RIEVK  S VPRSNFNDTLRDQNQYE KNYSAGGSMLG
Sbjct: 80  ARRIEVKHRSEVPRSNFNDTLRDQNQYE-KNYSAGGSMLG 118

The following BLAST results are available for this feature:
BLAST of Csa7G197300 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K741_CUCSA4.5e-72100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G197300 PE=4 SV=1[more]
BLAST of Csa7G197300 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700188889|gb|KGN44122.1|6.4e-72100.00hypothetical protein Csa_7G197300 [Cucumis sativus][more]
gi|449444022|ref|XP_004139774.1|2.4e-4796.00PREDICTED: uncharacterized protein LOC101220193 [Cucumis sativus][more]
gi|659093896|ref|XP_008447776.1|8.4e-4089.11PREDICTED: uncharacterized protein LOC103490166 isoform X2 [Cucumis melo][more]
gi|659093894|ref|XP_008447775.1|1.4e-3990.00PREDICTED: uncharacterized protein LOC103490166 isoform X1 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006282 regulation of DNA repair
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU088156cucumber EST collection version 3.0transcribed_cluster
CU088955cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa7G197300.1Csa7G197300.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU088156CU088156transcribed_cluster
CU088955CU088955transcribed_cluster