Csa7G169600 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa7G169600
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr7 : 6457581 .. 6457936 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGATGCATCAAGTGTCAAATGTAGATTCCAAATTCTAGTTCCAATATTGTGCTTGAGACGTTGCTCCTCTAAACTTAAAACAAGGTTCAAATTACGCCTAACAGAACACAGGAAAGTCAAAGATGATCATTCTTTTCTCCAAGTTGAAGAAAATGTTGGAGGAACCGCACTAGCAAGGAATAGTCTCAAAAGAAAGTGAAGGATTCTGAATATATATCACCTTCAAATGGAGGGTGGAATAGGGAAATGATAGAGATTCTTTGAAAAAGTATGCTTCCTGTCATTTTCAGCTCATCATCACCAGAGAATCCCATGGAAATGACTCATGGTCAGCTTCCAATGACTTCCTAG

mRNA sequence

ATGTCGGATGCATCAAGTGTCAAATGTAGATTCCAAATTCTAGTTCCAATATTGTGCTTGAGACGTTGCTCCTCTAAACTTAAAACAAGGTTCAAATTACGCCTAACAGAACACAGGAAAGTCAAAGATGATCATTCTTTTCTCCAAGTTGAAGAAAATGTTGGAGGAACCGCACTAGCAAGGAATAGTCTCAAAAGAAACTCATCATCACCAGAGAATCCCATGGAAATGACTCATGGTCAGCTTCCAATGACTTCCTAG

Coding sequence (CDS)

ATGTCGGATGCATCAAGTGTCAAATGTAGATTCCAAATTCTAGTTCCAATATTGTGCTTGAGACGTTGCTCCTCTAAACTTAAAACAAGGTTCAAATTACGCCTAACAGAACACAGGAAAGTCAAAGATGATCATTCTTTTCTCCAAGTTGAAGAAAATGTTGGAGGAACCGCACTAGCAAGGAATAGTCTCAAAAGAAACTCATCATCACCAGAGAATCCCATGGAAATGACTCATGGTCAGCTTCCAATGACTTCCTAG

Protein sequence

MSDASSVKCRFQILVPILCLRRCSSKLKTRFKLRLTEHRKVKDDHSFLQVEENVGGTALARNSLKRNSSSPENPMEMTHGQLPMTS*
Homology
[Close]
BLAST of Csa7G169600 vs. TrEMBL
Match: A0A0A0K574_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G169600 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 5.7e-41
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1 

Query: 1  MSDASSVKCRFQILVPILCLRRCSSKLKTRFKLRLTEHRKVKDDHSFLQVEENVGGTALA 60
          MSDASSVKCRFQILVPILCLRRCSSKLKTRFKLRLTEHRKVKDDHSFLQVEENVGGTALA
Sbjct: 1  MSDASSVKCRFQILVPILCLRRCSSKLKTRFKLRLTEHRKVKDDHSFLQVEENVGGTALA 60

Query: 61 RNSLKRNSSSPENPMEMTHGQLPMTS 87
          RNSLKRNSSSPENPMEMTHGQLPMTS
Sbjct: 61 RNSLKRNSSSPENPMEMTHGQLPMTS 86

[Close]
BLAST of Csa7G169600 vs. NCBI nr
Match: gi|700188846|gb|KGN44079.1| (hypothetical protein Csa_7G169600 [Cucumis sativus])

HSP 1 Score: 174.5 bits (441), Expect = 8.2e-41
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1 

Query: 1  MSDASSVKCRFQILVPILCLRRCSSKLKTRFKLRLTEHRKVKDDHSFLQVEENVGGTALA 60
          MSDASSVKCRFQILVPILCLRRCSSKLKTRFKLRLTEHRKVKDDHSFLQVEENVGGTALA
Sbjct: 1  MSDASSVKCRFQILVPILCLRRCSSKLKTRFKLRLTEHRKVKDDHSFLQVEENVGGTALA 60

Query: 61 RNSLKRNSSSPENPMEMTHGQLPMTS 87
          RNSLKRNSSSPENPMEMTHGQLPMTS
Sbjct: 61 RNSLKRNSSSPENPMEMTHGQLPMTS 86

The following BLAST results are available for this feature:
BLAST of Csa7G169600 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K574_CUCSA5.7e-41100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_7G169600 PE=4 SV=1[more]
BLAST of Csa7G169600 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700188846|gb|KGN44079.1|8.2e-41100.00hypothetical protein Csa_7G169600 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa7G169600.1Csa7G169600.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa7G169600CSPI07G08930Wild cucumber (PI 183967)cpicuB354
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa7G169600Cucumber (Gy14) v2cgybcuB323